Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3637_(-)_4076663_4077163
DateFri Aug 9 18:20:32 BST 2019
Unique Job ID03259a8569d60b0a
SequenceLPGRVFASPA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.938 Y:64.264 Z:91.352
Model (left) based on template c4fcyA_
Top template information
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposase;
PDBTitle: crystal structure of the bacteriophage mu transpososome
Confidence and coverage
Confidence: 98.8% Coverage: 61%
101 residues ( 61% of your sequence) have been modelled with 98.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4fcyA_



98.8 18
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposase;
PDBTitle: crystal structure of the bacteriophage mu transpososome
2c1bcoA_



98.1 11
PDB header:transposase
Chain: A: PDB Molecule:bacteriophage mu transposase;
PDBTitle: bacteriophage mu transposase core domain
3d1bcoa1



96.4 17
Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
4d1c6va_



74.4 25
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
5d1bcoa2



68.9 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:mu transposase, core domain
6c4uhpA_



56.9 39
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
7c4qkoH_



56.7 27
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
8d2jb0b1



56.3 23
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
9c7ceiB_



55.0 28
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
10c3i3lA_



47.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
11c3u1qB_



45.8 21
PDB header:peptidoglycan binding protein
Chain: B: PDB Molecule:mycobacteria tuberculosis ld-transpeptidase type 2;
PDBTitle: crystal structure of m. tuberculosis ld-transpeptidase type 2 with 2-2 mercaptoethanol
12d2gykb1



40.4 23
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
13c4jmxA_



30.4 16
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:probable l,d-transpeptidase ldta;
PDBTitle: structure of ld transpeptidase ldtmt1 in complex with imipenem
14c3dlrA_



27.6 18
PDB header:transferase
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain from pfv integrase
15c6ed2A_



27.3 24
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: faecalibacterium prausnitzii beta-glucuronidase
16c5ew5C_



25.6 28
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
17c3fn9B_



25.1 16
PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
18c6ecaA_



24.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: lactobacillus rhamnosus beta-glucuronidase
19c6d1pB_



24.1 14
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolases family 2, sugar binding domain protein;
PDBTitle: apo structure of bacteroides uniformis beta-glucuronidase 3
20c6mvgB_



23.7 14
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of fmn-binding beta-glucuronidase from ruminococcus2 gnavus
21c6dxuA_



not modelled 21.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: crystal structure of parabacteroides merdae beta-glucuronidase (gus)
22c3cmgA_



not modelled 21.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
23c5ldrA_



not modelled 21.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:beta-d-galactosidase;
PDBTitle: crystal structure of a cold-adapted dimeric beta-d-galactosidase from2 paracoccus sp. 32d strain in complex with galactose
24c3bnwA_



not modelled 20.7 9
PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase, putative;
PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei
25c4jkmB_



not modelled 19.5 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of clostridium perfringens beta-glucuronidase
26c4ypjB_



not modelled 18.6 14
PDB header:hydrolase
Chain: B: PDB Molecule:beta galactosidase;
PDBTitle: x-ray structure of the mutant of glycoside hydrolase
27c6dxuB_



not modelled 18.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: crystal structure of parabacteroides merdae beta-glucuronidase (gus)
28c5c70B_



not modelled 17.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:glucuronidase;
PDBTitle: the structure of aspergillus oryzae beta-glucuronidase
29c5ag8A_



not modelled 17.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:gingipain r2;
PDBTitle: crystal structure of a mutant (665i6h) of the c-terminal2 domain of rgpb
30c3djmA_



not modelled 17.2 4
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein duf427;
PDBTitle: crystal structure of a protein of unknown function from duf427 family2 (rsph17029_0682) from rhodobacter sphaeroides 2.4.1 at 2.51 a3 resolution
31c4xvoB_



not modelled 16.5 18
PDB header:transferase
Chain: B: PDB Molecule:l,d-transpeptidase;
PDBTitle: l,d-transpeptidase from mycobacterium smegmatis
32c5t9gD_



not modelled 16.3 14
PDB header:hydrolase
Chain: D: PDB Molecule:glycoside hydrolase;
PDBTitle: crystal structure of bugh2cwt in complex with galactoisofagomine
33c4cucA_



not modelled 16.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: unravelling the multiple functions of the architecturally intricate2 streptococcus pneumoniae beta-galactosidase, bgaa.
34c6d4oA_



not modelled 15.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: eubacterium eligens beta-glucuronidase bound to an amoxapine-2 glucuronide conjugate
35c5dmyA_



not modelled 15.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase - construct 33-930
36c2k0mA_



not modelled 15.3 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43
37c4k73A_



not modelled 15.1 16
PDB header:transferase
Chain: A: PDB Molecule:l,d-transpeptidase;
PDBTitle: x-ray crystal structure of an l,d-transpeptidase from mycobacterium2 tuberculosis h37rv
38c4jklA_



not modelled 15.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of streptococcus agalactiae beta-glucuronidase in2 space group p21212
39c5t98B_



not modelled 14.9 22
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside hydrolase;
PDBTitle: crystal structure of bugh2awt
40c3bgaB_



not modelled 14.7 20
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482
41c1psvA_



not modelled 14.3 24
PDB header:designed peptide
Chain: A: PDB Molecule:pda8d;
PDBTitle: computationally designed peptide with a beta-beta-alpha2 fold selection, nmr, 32 structures
42c3gm8A_



not modelled 14.2 11
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
43c5z19F_



not modelled 13.4 16
PDB header:hydrolase
Chain: F: PDB Molecule:beta-glucuronidase;
PDBTitle: the crystal structure of ruminococcus gnavus beta-glucuronidase in2 complex with uronic isofagomine
44d1jz8a3



not modelled 13.4 18
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
45c5i4rA_



not modelled 12.4 40
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (trypsin-modified)
46d1fexa_



not modelled 12.0 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
47d1uwva1



not modelled 11.8 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TRAM domain
48c6ed1B_



not modelled 11.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: bacteroides dorei beta-glucuronidase
49c6hpdA_



not modelled 11.2 11
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase (gh2);
PDBTitle: the structure of a beta-glucuronidase from glycoside hydrolase family2 2
50d1yq2a3



not modelled 11.2 19
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
51c5z1bC_



not modelled 11.1 18
PDB header:hydrolase
Chain: C: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: structure of bifidobacterium dentium beta-glucuronidase complexed with2 coumarin-3-o-glucuronide
52d1zata1



not modelled 11.0 15
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
53c5mzyA_



not modelled 11.0 9
PDB header:lyase
Chain: A: PDB Molecule:glutaconate coa-transferase family, subunit a;
PDBTitle: crystal structure of the decarboxylase aiba/aibb in complex with a2 possible transition state analog
54c5n6uC_



not modelled 11.0 9
PDB header:hydrolase
Chain: C: PDB Molecule:beta-mannosidase;
PDBTitle: crystal structure of beta-d-mannosidase from dictyoglomus2 thermophilum.
55d1yeza1



not modelled 10.8 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TRAM domain
56c4azzB_



not modelled 10.2 21
PDB header:hydrolase
Chain: B: PDB Molecule:levanase;
PDBTitle: carbohydrate binding module cbm66 from bacillus subtilis
57d1g2913



not modelled 10.1 16
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
58c5uj6A_



not modelled 9.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolases family 2, sugar binding domain protein;
PDBTitle: crystal structure of bacteroides uniformis beta-glucuronidase
59d1vhea1



not modelled 9.4 13
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Aminopeptidase/glucanase lid domain
Family:Aminopeptidase/glucanase lid domain
60c3lpgA_



not modelled 9.3 18
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea
61c1y8aA_



not modelled 8.6 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1437;
PDBTitle: structure of gene product af1437 from archaeoglobus fulgidus
62c5nocA_



not modelled 8.6 25
PDB header:dna binding protein
Chain: A: PDB Molecule:stage 0 sporulation protein j;
PDBTitle: solution nmr structure of the c-terminal domain of parb (spo0j)
63c2k6rA_



not modelled 8.3 16
PDB header:de novo protein
Chain: A: PDB Molecule:full sequence design 1 synthetic superstable;
PDBTitle: protein folding on a highly rugged landscape: experimental observation2 of glassy dynamics and structural frustration
64c4lh9A_



not modelled 8.2 6
PDB header:transcription
Chain: A: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the refolded hood domain (asp256-gly295) of hetr
65d1a1ua_



not modelled 8.0 29
Fold:p53 tetramerization domain
Superfamily:p53 tetramerization domain
Family:p53 tetramerization domain
66c4z7aA_



not modelled 7.9 29
PDB header:transferase
Chain: A: PDB Molecule:mycobacterium tuberculosis (3,3)l,d-transpeptidase type 5;
PDBTitle: structural and biochemical characterization of a non-functionally2 redundant m. tuberculosis (3,3) l,d-transpeptidase, ldtmt5.
67c3d8dA_



not modelled 7.7 8
PDB header:protein binding
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family b member
PDBTitle: crystal structure of the human fe65-ptb1 domain
68d2gtad1



not modelled 7.3 6
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
69c5d55A_



not modelled 7.2 20
PDB header:cell adhesion
Chain: A: PDB Molecule:hdab,hdaa (adhesin), hus-associated diffuse adherence;
PDBTitle: crystal structure of the e. coli hda pilus minor tip subunit, hdab
70d2grea1



not modelled 7.1 13
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Aminopeptidase/glucanase lid domain
Family:Aminopeptidase/glucanase lid domain
71c3vxvA_



not modelled 6.7 24
PDB header:hydrolase/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 4;
PDBTitle: crystal structure of methyl cpg binding domain of mbd4 in complex with2 the 5mcg/tg sequence
72c3vynB_



not modelled 6.6 26
PDB header:transferase
Chain: B: PDB Molecule:probable conserved lipoprotein lpps;
PDBTitle: crystal structure of mycobacterium tuberculosis l,d-transpeptidase2 ldtmt2 n55 truncation mutant (resideus 55-408)
73c5m0rF_



not modelled 6.2 29
PDB header:hydrolase
Chain: F: PDB Molecule:integrase;
PDBTitle: cryo-em reconstruction of the maedi-visna virus (mvv) strand transfer2 complex
74c6mvfA_



not modelled 6.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase/beta-glucuronidase;
PDBTitle: crystal structure of fmn-binding beta-glucuronidase from2 facaelibacterium prausnitzii l2-6
75d2nmla1



not modelled 6.1 8
Fold:ERH-like
Superfamily:ERH-like
Family:ERH-like
76c1fsdA_



not modelled 5.9 18
PDB header:novel sequence
Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif;
PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, 41 structures
77c1fsvA_



not modelled 5.9 18
PDB header:beta beta alpha motif
Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif;
PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, minimized average structure
78c2ksnA_



not modelled 5.8 17
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin domain-containing protein 2;
PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
79d2gtaa1



not modelled 5.8 6
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
80d1yvca1



not modelled 5.8 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TRAM domain
81c5z1vB_



not modelled 5.7 22
PDB header:unknown function
Chain: B: PDB Molecule:avrpib protein;
PDBTitle: crystal structure of avrpib
82d1y0ya1



not modelled 5.7 13
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Aminopeptidase/glucanase lid domain
Family:Aminopeptidase/glucanase lid domain
83c4ndvB_



not modelled 5.7 23
PDB header:sugar binding protein
Chain: B: PDB Molecule:alpha-galactosyl-binding lectin;
PDBTitle: crystal structure of l. decastes alpha-galactosyl-binding lectin in2 complex with globotriose
84c2hklB_



not modelled 5.6 15
PDB header:transferase
Chain: B: PDB Molecule:l,d-transpeptidase;
PDBTitle: crystal structure of enterococcus faecium l,d-2 transpeptidase c442s mutant
85c2eqjA_



not modelled 5.4 13
PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
86c1fmeA_



not modelled 5.3 18
PDB header:de novo protein
Chain: A: PDB Molecule:fsd-ey peptide;
PDBTitle: solution structure of fsd-ey, a novel peptide assuming a2 beta-beta-alpha fold
87c3mxtA_



not modelled 5.2 17
PDB header:ligase
Chain: A: PDB Molecule:pantothenate synthetase;
PDBTitle: crystal structure of pantoate-beta-alanine ligase from campylobacter2 jejuni
88d1hs5a_



not modelled 5.2 29
Fold:p53 tetramerization domain
Superfamily:p53 tetramerization domain
Family:p53 tetramerization domain
89c2mqkA_



not modelled 5.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase

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