Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3647c_(-)_4087789_4088367
DateFri Aug 9 18:20:33 BST 2019
Unique Job ID309f901282018c07
SequenceVSQLSFFAAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.884 Y:34.885 Z:35.927
Model (left) based on template c1r7mA_
Top template information
PDB header:hydrolase/dna
Chain: A: PDB Molecule:intron-encoded endonuclease i-scei;
PDBTitle: the homing endonuclease i-scei bound to its dna recognition2 region
Confidence and coverage
Confidence: 38.6% Coverage: 53%
102 residues ( 53% of your sequence) have been modelled with 38.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1r7mA_
38.6 14
PDB header:hydrolase/dna
Chain: A: PDB Molecule:intron-encoded endonuclease i-scei;
PDBTitle: the homing endonuclease i-scei bound to its dna recognition2 region
2d1dq3a4
19.6 18
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
3d1em8a_
16.7 20
Fold:DNA polymerase III chi subunit
Superfamily:DNA polymerase III chi subunit
Family:DNA polymerase III chi subunit
4d1jala2
13.9 35
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
5c4za1A_
13.4 42
PDB header:transferase
Chain: A: PDB Molecule:nosa;
PDBTitle: crystal structure of nosa involved in nosiheptide biosynthesis
6d1ni3a2
11.8 30
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
7d1jvaa3
10.2 12
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
8c2dzaA_
8.8 34
PDB header:transferase
Chain: A: PDB Molecule:dihydropteroate synthase;
PDBTitle: crystal structure of dihydropteroate synthase from thermus2 thermophilus hb8 in complex with 4-aminobenzoate
9d1k7ja_
6.3 21
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
10c3dluA_
6.2 15
PDB header:rna binding protein
Chain: A: PDB Molecule:signal recognition particle 19 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling the2 ribonucleic core of the signal recognition particle from the archaeon3 pyrococcus furiosus.
11c2qsiB_
5.9 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
12d1r7ma2
5.5 15
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
13c2faoB_
5.5 25
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:probable atp-dependent dna ligase;
PDBTitle: crystal structure of pseudomonas aeruginosa ligd polymerase2 domain
14c3ccmG_
5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation g2611u
15c1vqkG_
5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of ccda-phe-cap-bio bound to the a site of the ribosomal2 subunit of haloarcula marismortui
16c1yitG_
5.3 36
PDB header:ribosome/antibiotic
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of virginiamycin m and s bound to the 50s ribosomal2 subunit of haloarcula marismortui
17c3i56G_
5.3 36
PDB header:ribosome/antibiotic
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: co-crystal structure of triacetyloleandomcyin bound to the large2 ribosomal subunit
18c1kc8I_
5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein l10;
PDBTitle: co-crystal structure of blasticidin s bound to the 50s2 ribosomal subunit
19c1k73I_
5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein l10;
PDBTitle: co-crystal structure of anisomycin bound to the 50s2 ribosomal subunit
20c1s72G_
5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: refined crystal structure of the haloarcula marismortui large2 ribosomal subunit at 2.4 angstrom resolution
21c1kqsG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein l10;
PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis
22c1m90I_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein l10;
PDBTitle: co-crystal structure of cca-phe-caproic acid-biotin and sparsomycin2 bound to the 50s ribosomal subunit
23c1m1kI_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein l10;
PDBTitle: co-crystal structure of azithromycin bound to the 50s2 ribosomal subunit of haloarcula marismortui
24c1yjwG_
not modelled 5.3 36
PDB header:ribosome/antibiotic
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of quinupristin bound to the g2099a mutant 50s2 ribosomal subunit of haloarcula marismortui
25c3cceG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation u2535a
26c1vq7G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of the transition state analogue "dca" bound to the2 large ribosomal subunit of haloarcula marismortui
27c3ccuG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation g2482c
28c1w2bG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: trigger factor ribosome binding domain in complex with 50s
29c1kd1I_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein l10;
PDBTitle: co-crystal structure of spiramycin bound to the 50s2 ribosomal subunit of haloarcula marismortui
30c1qvgG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of cca oligonucleotide bound to the trna binding sites of2 the large ribosomal subunit of haloarcula marismortui
31c1jj2G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein l10;
PDBTitle: fully refined crystal structure of the haloarcula2 marismortui large ribosomal subunit at 2.4 angstrom3 resolution
32c1k8aI_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein l10;
PDBTitle: co-crystal structure of carbomycin a bound to the 50s2 ribosomal subunit of haloarcula marismortui
33c2otlG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: girodazole bound to the large subunit of haloarcula marismortui
34c3cc2G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the refined crystal structure of the haloarcula marismortui large2 ribosomal subunit at 2.4 angstrom resolution with rrna sequence for3 the 23s rrna and genome-derived sequences for r-proteins
35c1k9mI_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein l10;
PDBTitle: co-crystal structure of tylosin bound to the 50s ribosomal2 subunit of haloarcula marismortui
36c3cmaG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the structure of cca and cca-phe-cap-bio bound to the large ribosomal2 subunit of haloarcula marismortui
37c3i55G_
not modelled 5.3 36
PDB header:ribosome/antibiotic
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: co-crystal structure of mycalamide a bound to the large ribosomal2 subunit
38c1vqmG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of the transition state analogue "dan" bound to the2 large ribosomal subunit of haloarcula marismortui
39c1q7yI_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of ccdap-puromycin bound at the peptidyl transferase2 center of the 50s ribosomal subunit
40c1vq5G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of the transition state analogue "raa" bound to the2 large ribosomal subunit of haloarcula marismortui
41c2otjG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: 13-deoxytedanolide bound to the large subunit of haloarcula2 marismortui
42c1qvfG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of a deacylated trna minihelix bound to the e site of the2 large ribosomal subunit of haloarcula marismortui
43c1vq9G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of cca-phe-cap-bio and the antibiotic sparsomycin bound2 to the large ribosomal subunit of haloarcula marismortui
44c1yjnG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of clindamycin bound to the g2099a mutant 50s2 ribosomal subunit of haloarcula marismortui
45c3ow2G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: crystal structure of enhanced macrolide bound to 50s ribosomal subunit
46c1yi2G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of erythromycin bound to the g2099a mutant 50s2 ribosomal subunit of haloarcula marismortui
47c1vq8G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound2 to the large ribosomal subunit of haloarcula marismortui
48c1q86I_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of cca-phe-cap-biotin bound simultaneously at half2 occupancy to both the a-site and p-site of the the 50s ribosomal3 subunit.
49c3g6eG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: co-crystal structure of homoharringtonine bound to the large ribosomal2 subunit
50c1vqoG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of ccpmn bound to the large ribosomal subunit haloarcula2 marismortui
51c1vq4G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of the transition state analogue "daa" bound to the2 large ribosomal subunit of haloarcula marismortui
52c1yijG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of telithromycin bound to the g2099a mutant 50s2 ribosomal subunit of haloarcula marismortui
53c3cxcG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein l10;
PDBTitle: the structure of an enhanced oxazolidinone inhibitor bound2 to the 50s ribosomal subunit of h. marismortui
54c1q81I_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of minihelix with 3' puromycin bound to a-site of2 the 50s ribosomal subunit.
55c1njiI_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: structure of chloramphenicol bound to the 50s ribosomal2 subunit
56c3ccvG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation g2616a
57c3cd6G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: co-cystal of large ribosomal subunit mutant g2616a with cc-puromycin
58c1yj9G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of the mutant 50s ribosomal subunit of haloarcula2 marismortui containing a three residue deletion in l22
59c3cc4G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
60c2qexG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: negamycin binds to the wall of the nascent chain exit tunnel of the2 50s ribosomal subunit
61c3cclG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation u2535c. density for anisomycin is visible but not included3 in model.
62c3cpwG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the structure of the antibiotic linezolid bound to the large ribosomal2 subunit of haloarcula marismortui
63c3cc7G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2487u
64c1vq6G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of c-hpmn and cca-phe-cap-bio bound to the large2 ribosomal subunit of haloarcula marismortui
65c1q82I_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of cc-puromycin bound to the a-site of the 50s2 ribosomal subunit
66c1n8rI_
not modelled 5.3 36
PDB header:ribosome
Chain: I: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: structure of large ribosomal subunit in complex with2 virginiamycin m
67c1vqpG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of the transition state analogue "rap" bound to the2 large ribosomal subunit of haloarcula marismortui
68c1yhqG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: crystal structure of azithromycin bound to the g2099a mutant 50s2 ribosomal subunit of haloarcula marismortui
69c3ccqG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation a2488u
70c3ccjG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u
71c1vqlG_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:acidic ribosomal protein p0 homolog;
PDBTitle: the structure of the transition state analogue "dcsn" bound to the2 large ribosomal subunit of haloarcula marismortui
72c3g71G_
not modelled 5.3 36
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: co-crystal structure of bruceantin bound to the large ribosomal2 subunit
73c3ccsG_
not modelled 5.1 33
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation g2482a

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