Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3648c_(cspA)_4088507_4088710
DateFri Aug 9 18:20:33 BST 2019
Unique Job ID1f2412cb54a6794f
SequenceMPQGTVKWFN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.625 Y:31.569 Z:30.673
Model (left) based on template c5xv9A_
Top template information
PDB header:rna binding protein
Chain: A: PDB Molecule:cold-shock dna-binding domain family protein;
PDBTitle: solution structure of cold shock protein from colwellia2 psychrerythraea
Confidence and coverage
Confidence: 99.9% Coverage:100%
67 residues (100% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xv9A_



99.9 57
PDB header:rna binding protein
Chain: A: PDB Molecule:cold-shock dna-binding domain family protein;
PDBTitle: solution structure of cold shock protein from colwellia2 psychrerythraea
2c5o6fA_



99.9 84
PDB header:dna binding protein
Chain: A: PDB Molecule:cold-shock protein;
PDBTitle: nmr structure of cold shock protein a from corynebacterium2 pseudotuberculosis
3d1c9oa_



99.9 62
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
4c3a0jB_



99.9 56
PDB header:transcription
Chain: B: PDB Molecule:cold shock protein;
PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8
5d2es2a1



99.9 60
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
6d1mjca_



99.9 60
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
7c3camB_



99.9 47
PDB header:gene regulation
Chain: B: PDB Molecule:cold-shock domain family protein;
PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis
8c2lssA_



99.9 39
PDB header:rna binding protein, dna binding protein
Chain: A: PDB Molecule:cold shock-like protein;
PDBTitle: solution structure of the r. rickettsii cold shock-like protein
9d1h95a_



99.9 43
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
10c4a4iA_



99.9 45
PDB header:rna binding protein
Chain: A: PDB Molecule:protein lin-28 homolog b;
PDBTitle: crystal structure of the human lin28b cold shock domain
11c2k5nA_



99.9 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cold-shock protein;
PDBTitle: solution nmr structure of the n-terminal domain of protein eca15802 from erwinia carotovora, northeast structural genomics consortium3 target ewr156a
12c2mqhA_



99.9 55
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleic acid binding protein;
PDBTitle: solution structure of the chlamydomonas reinhardtii nab1 cold shock2 domain, csd1
13d1g6pa_



99.9 53
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
14c2kcmA_



99.8 30
PDB header:nucleic acid binding protein
Chain: A: PDB Molecule:cold shock domain family protein;
PDBTitle: solution nmr structure of the n-terminal ob-domain of so_1732 from2 shewanella oneidensis. northeast structural genomics consortium3 target sor210a.
15c3aqqD_



99.8 31
PDB header:dna binding protein
Chain: D: PDB Molecule:calcium-regulated heat stable protein 1;
PDBTitle: crystal structure of human crhsp-24
16c3trzE_



99.8 42
PDB header:rna binding protein/rna
Chain: E: PDB Molecule:protein lin-28 homolog a;
PDBTitle: mouse lin28a in complex with let-7d microrna pre-element
17c2ytyA_



99.7 27
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein)
18c2ytxA_



99.7 38
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein)
19d1wfqa_



99.7 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
20c1x65A_



99.6 27
PDB header:rna binding protein
Chain: A: PDB Molecule:unr protein;
PDBTitle: solution structure of the third cold-shock domain of the human2 kiaa0885 protein (unr protein)
21c2ytvA_



not modelled 99.5 29
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein)
22c2bh8B_



not modelled 99.5 48
PDB header:transcription
Chain: B: PDB Molecule:1b11;
PDBTitle: combinatorial protein 1b11
23d2ix0a2



not modelled 96.7 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
24d1a62a2



not modelled 96.3 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
25c2a8vA_



not modelled 96.3 23
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
26c2ix1A_



not modelled 96.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:exoribonuclease 2;
PDBTitle: rnase ii d209n mutant
27d1smxa_



not modelled 93.6 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
28c3l0oA_



not modelled 89.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
29c3go5A_



not modelled 89.7 10
PDB header:gene regulation
Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains;
PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
30c4pmwB_



not modelled 89.7 15
PDB header:hydrolase/rna
Chain: B: PDB Molecule:dis3-like exonuclease 2;
PDBTitle: structure of mouse dis3l2 in complex with oligou rna substrate
31c2k52A_



not modelled 87.9 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1198;
PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b
32c6qh2A_



not modelled 87.1 24
PDB header:signaling protein
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: solution nmr ensemble for a chimeric kh-s1 domain construct of2 exosomal polynucleotide phosphrylase at 298k compiled using the3 comand method
33c1xpuB_



not modelled 87.0 27
PDB header:transcription/rna
Chain: B: PDB Molecule:rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
34d2ix0a1



not modelled 86.6 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
35c4aimA_



not modelled 86.4 23
PDB header:transferase/peptide
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
36c1zeqX_



not modelled 85.1 16
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
37c2vnuD_



not modelled 84.8 22
PDB header:hydrolase/rna
Chain: D: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: crystal structure of sc rrp44
38d1t9ha1



not modelled 83.4 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
39c5xguB_



not modelled 82.7 31
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease r;
PDBTitle: escherichia coli. rnase r
40c4oxpA_



not modelled 82.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease e;
PDBTitle: x-ray crystal structure of the s1 and 5'-sensor domains of rnase e2 from caulobacter crescentus
41d1u0la1



not modelled 81.8 11
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
42c2l55A_



not modelled 80.0 17
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
43d1y14b1



not modelled 76.5 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
44c2cqoA_



not modelled 75.1 18
PDB header:ribosome
Chain: A: PDB Molecule:nucleolar protein of 40 kda;
PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067
45c1u0lB_



not modelled 73.4 11
PDB header:hydrolase
Chain: B: PDB Molecule:probable gtpase engc;
PDBTitle: crystal structure of yjeq from thermotoga maritima
46d2c35b1



not modelled 72.8 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
47c3l0oB_



not modelled 70.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
48d1hh2p1



not modelled 68.8 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
49d1kl9a2



not modelled 67.0 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
50c1hh2P_



not modelled 63.3 14
PDB header:transcription regulation
Chain: P: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima
51c5lm7A_



not modelled 62.6 10
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: crystal structure of the lambda n-nus factor complex
52c3sluB_



not modelled 61.6 9
PDB header:hydrolase
Chain: B: PDB Molecule:m23 peptidase domain protein;
PDBTitle: crystal structure of nmb0315
53c5x50G_



not modelled 59.8 24
PDB header:transferase
Chain: G: PDB Molecule:rna polymerase ii subunit;
PDBTitle: rna polymerase ii from komagataella pastoris (type-2 crystal)
54c2c4rL_



not modelled 56.3 19
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
55c2yv5A_



not modelled 55.9 9
PDB header:hydrolase
Chain: A: PDB Molecule:yjeq protein;
PDBTitle: crystal structure of yjeq from aquifex aeolicus
56d2z0sa1



not modelled 53.9 7
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
57c2oceA_



not modelled 53.9 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
58c1t9hA_



not modelled 53.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:probable gtpase engc;
PDBTitle: the crystal structure of yloq, a circularly permuted gtpase.
59d2nn6h1



not modelled 49.6 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
60c2mflA_



not modelled 48.7 20
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: domain 2 of e. coli ribosomal protein s1
61d2ba0a1



not modelled 48.6 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
62c1l2fA_



not modelled 47.9 14
PDB header:transcription
Chain: A: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain
63d1wi5a_



not modelled 46.3 13
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
64c1j6qA_



not modelled 42.3 17
PDB header:chaperone
Chain: A: PDB Molecule:cytochrome c maturation protein e;
PDBTitle: solution structure and characterization of the heme2 chaperone ccme
65d1j6qa_



not modelled 42.3 17
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
66c2wp8J_



not modelled 42.0 17
PDB header:hydrolase
Chain: J: PDB Molecule:exosome complex exonuclease dis3;
PDBTitle: yeast rrp44 nuclease
67c3uz0D_



not modelled 41.9 21
PDB header:transport protein
Chain: D: PDB Molecule:stage ii sporulation protein q;
PDBTitle: crystal structure of spoiiiah and spoiiq complex
68d1tp5a1



not modelled 38.9 19
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
69c5c0wJ_



not modelled 36.4 17
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease dis3;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
70c2khiA_



not modelled 35.5 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1
71c2xnqA_



not modelled 34.5 32
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear polyadenylated rna-binding protein 3;
PDBTitle: structural insights into cis element recognition of non-2 polyadenylated rnas by the nab3-rrm
72d2je6i1



not modelled 32.9 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
73d3bzka4



not modelled 32.1 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
74c2dhxA_



not modelled 31.3 16
PDB header:rna binding protein
Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 10
PDBTitle: solution structure of the rrm domain in the human poly (adp-2 ribose) polymerase family, member 10 variant
75c4nnkA_



not modelled 31.3 14
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: structural basis for targeting the ribosomal protein s1 of2 mycobacterium tuberculosis by pyrazinamide
76c2k4kA_



not modelled 29.2 20
PDB header:rna binding protein
Chain: A: PDB Molecule:general stress protein 13;
PDBTitle: solution structure of gsp13 from bacillus subtilis
77c2m0tA_



not modelled 28.3 16
PDB header:protein binding
Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf1;
PDBTitle: structural characterization of the extended pdz1 domain from nherf1
78c4rnzA_



not modelled 26.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: structure of helicobacter pylori csd3 from the hexagonal crystal
79c2gu1A_



not modelled 26.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
80c3h0gS_



not modelled 26.0 28
PDB header:transcription
Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
81c2dc2A_



not modelled 24.8 14
PDB header:structural protein
Chain: A: PDB Molecule:golgi associated pdz and coiled-coil motif
PDBTitle: solution structure of pdz domain
82c3bpuA_



not modelled 24.4 22
PDB header:transferase
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain-
PDBTitle: crystal structure of the 3rd pdz domain of human membrane associated2 guanylate kinase, c677s and c709s double mutant
83c2i38A_



not modelled 24.2 27
PDB header:rna binding protein/chimera
Chain: A: PDB Molecule:fusion protein consists of immunoglobulin g-binding protein
PDBTitle: solution structure of the rrm of srp20
84c4wijA_



not modelled 24.0 50
PDB header:transcription
Chain: A: PDB Molecule:splicing factor, proline- and glutamine-rich;
PDBTitle: human splicing factor, construct 1
85c2kjdA_



not modelled 23.5 12
PDB header:signaling protein
Chain: A: PDB Molecule:sodium/hydrogen exchange regulatory cofactor nhe-
PDBTitle: solution structure of extended pdz2 domain from nherf1 (150-2 270)
86c2qt7B_



not modelled 23.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like n;
PDBTitle: crystallographic structure of the mature ectodomain of the human2 receptor-type protein-tyrosine phosphatase ia-2 at 1.30 angstroms
87c5n7gA_



not modelled 23.2 20
PDB header:signaling protein
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain-
PDBTitle: magi-1 complexed with a synthetic prsk1 peptide
88c2pmzE_



not modelled 23.1 24
PDB header:translation, transferase
Chain: E: PDB Molecule:dna-directed rna polymerase subunit e;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
89c3ggeA_



not modelled 22.4 19
PDB header:protein binding
Chain: A: PDB Molecule:pdz domain-containing protein gipc2;
PDBTitle: crystal structure of the pdz domain of pdz domain-containing protein2 gipc2
90c2c35F_



not modelled 21.5 15
PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda polypeptide;
PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii
91d1be9a_



not modelled 21.4 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
92d1qaua_



not modelled 20.2 14
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
93c2b8kG_



not modelled 20.2 23
PDB header:transferase
Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda polypeptide;
PDBTitle: 12-subunit rna polymerase ii
94c2khjA_



not modelled 19.7 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1
95d1ueqa_



not modelled 19.3 18
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
96d1rgwa_



not modelled 19.0 11
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
97c3zh6B_



not modelled 19.0 20
PDB header:cell adhesion
Chain: B: PDB Molecule:protein e;
PDBTitle: the structure of haemophilus influenzae se_met form of protein e
98c3fm3B_



not modelled 17.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:methionine aminopeptidase 2;
PDBTitle: crystal structure of an encephalitozoon cuniculi methionine2 aminopeptidase type 2
99c2i04B_



not modelled 17.8 20
PDB header:peptide binding protein
Chain: B: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: x-ray crystal structure of magi-1 pdz1 bound to the c-2 terminal peptide of hpv18 e6

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