Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3656c_(-)_4095502_4095708
DateFri Aug 9 18:20:34 BST 2019
Unique Job ID706370e7483e3927
SequenceMLVITMFRVL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.305 Y:11.637 Z:13.533
Model (left) based on template c2ovmB_
Top template information
PDB header:transcription
Chain: B: PDB Molecule:ncor;
PDBTitle: progesterone receptor with bound asoprisnil and a peptide from the co-2 repressor ncor
Confidence and coverage
Confidence: 12.8% Coverage: 13%
9 residues ( 13% of your sequence) have been modelled with 12.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ovmB_



12.8 56
PDB header:transcription
Chain: B: PDB Molecule:ncor;
PDBTitle: progesterone receptor with bound asoprisnil and a peptide from the co-2 repressor ncor
2c4c3bB_



10.9 43
PDB header:viral protein
Chain: B: PDB Molecule:matrix protein 2-1;
PDBTitle: hrsv m2-1, p21 crystal form
3c2jobA_



10.2 5
PDB header:lipid binding protein
Chain: A: PDB Molecule:antilipopolysaccharide factor;
PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site
4c3vr8H_



7.7 15
PDB header:oxidoreductase
Chain: H: PDB Molecule:succinate dehydrogenase [ubiquinone] cytochrome b small
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum
5c2gpvI_



7.2 56
PDB header:transcription
Chain: I: PDB Molecule:nuclear receptor corepressor 2;
PDBTitle: estrogen related receptor-gamma ligand binding domain complexed with2 4-hydroxy-tamoxifen and a smrt peptide
6c2gpvH_



7.2 56
PDB header:transcription
Chain: H: PDB Molecule:nuclear receptor corepressor 2;
PDBTitle: estrogen related receptor-gamma ligand binding domain complexed with2 4-hydroxy-tamoxifen and a smrt peptide
7c2gpvG_



7.2 56
PDB header:transcription
Chain: G: PDB Molecule:nuclear receptor corepressor 2;
PDBTitle: estrogen related receptor-gamma ligand binding domain complexed with2 4-hydroxy-tamoxifen and a smrt peptide
8d1r11a3



6.1 21
Fold:MutS N-terminal domain-like
Superfamily:tRNA-intron endonuclease N-terminal domain-like
Family:tRNA-intron endonuclease N-terminal domain-like
9c4cs7A_



6.1 23
PDB header:viral protein
Chain: A: PDB Molecule:m2-1;
PDBTitle: crystal structure of the asymmetric human metapneumovirus2 m2-1 tetramer, form 1
10c4xtnJ_



6.0 17
PDB header:membrane protein
Chain: J: PDB Molecule:sodium pumping rhodopsin;
PDBTitle: crystal structure of the light-driven sodium pump kr2 in the2 pentameric red form, ph 4.9
11c2nysA_



5.7 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:agr_c_3712p;
PDBTitle: x-ray crystal structure of protein agr_c_3712 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr88.
12d2nysa1



5.7 29
Fold:SspB-like
Superfamily:SspB-like
Family:AGR C 3712p-like
13c2qazC_



5.4 29
PDB header:hydrolase activator
Chain: C: PDB Molecule:sspb protein;
PDBTitle: structure of c. crescentus sspb ortholog
14c2qasA_



5.4 29
PDB header:hydrolase activator
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of caulobacter crescentus sspb ortholog
15c4xjnM_



5.4 48
PDB header:viral protein/rna
Chain: M: PDB Molecule:nucleocapsid;
PDBTitle: structure of the parainfluenza virus 5 nucleocapsid-rna complex: an2 insight into paramyxovirus polymerase activity

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below