Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3657c_(-)_4095718_4096293
DateFri Aug 9 18:20:34 BST 2019
Unique Job ID1475d2f1c1fa2dbb
SequenceMALWLGAGPS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.710 Y:40.712 Z:33.237
Model (left) based on template c5nbgA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:general secretion pathway protein f;
PDBTitle: structure of the cytoplasmic domain i of outf in the d. dadantii type2 ii secretion system
Confidence and coverage
Confidence: 98.9% Coverage: 53%
101 residues ( 53% of your sequence) have been modelled with 98.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5nbgA_
98.9 15
PDB header:membrane protein
Chain: A: PDB Molecule:general secretion pathway protein f;
PDBTitle: structure of the cytoplasmic domain i of outf in the d. dadantii type2 ii secretion system
2c3c1qA_
98.9 14
PDB header:transport protein
Chain: A: PDB Molecule:general secretion pathway protein f;
PDBTitle: the three-dimensional structure of the cytoplasmic domains of epsf2 from the type 2 secretion system of vibrio cholerae
3c2whnA_
98.4 16
PDB header:protein transport
Chain: A: PDB Molecule:pilus assembly protein pilc;
PDBTitle: n-terminal domain from the pilc type iv pilus biogenesis protein
4c4hhxA_
97.6 11
PDB header:membrane protein
Chain: A: PDB Molecule:toxin coregulated pilus biosynthesis protein e;
PDBTitle: structure of cytoplasmic domain of tcpe from vibrio cholerae
5c6bs9A_
79.4 13
PDB header:transport protein
Chain: A: PDB Molecule:stage iii sporulation protein ab;
PDBTitle: stage iii sporulation protein ab (spoiiiab)
6c5n9yB_
46.1 11
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
7c4i0xA_
36.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
8c4ev6E_
36.3 4
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
9c5ezeG_
31.0 29
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
10c6j7jA_
28.8 16
PDB header:transferase
Chain: A: PDB Molecule:pseudomonas aeruginosa earp;
PDBTitle: crystal structure of pseudomonas aeruginosa earp
11c5f42B_
27.9 10
PDB header:transferase
Chain: B: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: activity and crystal structure of francisella novicida udp-n-2 acetylglucosamine acyltransferase
12c5nv8A_
22.4 16
PDB header:transferase
Chain: A: PDB Molecule:ef-p arginine 32 rhamnosyl-transferase;
PDBTitle: structural basis for earp-mediated arginine glycosylation of2 translation elongation factor ef-p
13c5ezeE_
21.8 27
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
14c5ezeC_
21.8 27
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
15c5f2yE_
21.8 27
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
16c5ezeA_
21.3 27
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
17c5ezeF_
21.3 27
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
18c5f2yA_
21.3 27
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
19c5f2yG_
21.3 27
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
20c2bbjB_
20.1 12
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
21d2ezla_
not modelled 19.1 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
22c6a6xC_
not modelled 15.0 29
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
23d2gtad1
not modelled 10.6 11
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
24c5wxkA_
not modelled 9.6 12
PDB header:transferase
Chain: A: PDB Molecule:earp;
PDBTitle: earp bound with domain i of ef-p
25c4l6v7_
not modelled 9.6 35
PDB header:electron transport
Chain: 7: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
26c6hqbM_
not modelled 9.6 35
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: monomeric cyanobacterial photosystem i
27c4l6vM_
not modelled 9.6 35
PDB header:electron transport
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
28c5oy09_
not modelled 9.6 35
PDB header:photosynthesis
Chain: 9: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
29c5oy0m_
not modelled 9.6 35
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
30c5oy0M_
not modelled 9.6 35
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
31c5avoA_
not modelled 8.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of the reduced form of homoserine dehydrogenase from2 sulfolobus tokodaii.
32c2jx4A_
not modelled 8.5 50
PDB header:membrane protein
Chain: A: PDB Molecule:vasopressin v2 receptor;
PDBTitle: nmr structure of the intracellular loop (i3) of the2 vasopressin v2 receptor (gpcr)
33c2kv5A_
not modelled 6.5 27
PDB header:toxin
Chain: A: PDB Molecule:putative uncharacterized protein rnai;
PDBTitle: solution structure of the par toxin fst in dpc micelles
34c5dg3D_
not modelled 6.2 12
PDB header:transferase
Chain: D: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: structure of pseudomonas aeruginosa lpxa in complex with udp-3-o-(r-3-2 hydroxydecanoyl)-glcnac
35c2ldjA_
not modelled 6.0 64
PDB header:de novo protein
Chain: A: PDB Molecule:trp-cage mini-protein;
PDBTitle: 1h chemical shift assignments and structure of trp-cage mini-protein2 with d-amino acid
36c3c8mA_
not modelled 5.5 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium
37d1ef4a_
not modelled 5.4 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
38c1f93F_
not modelled 5.3 24
PDB header:transcription
Chain: F: PDB Molecule:hepatocyte nuclear factor 1-alpha;
PDBTitle: crystal structure of a complex between the dimerization2 domain of hnf-1 alpha and the coactivator dcoh
39d1f93f_
not modelled 5.3 24
Fold:Dimerisation interlock
Superfamily:Dimerization cofactor of HNF-1 alpha
Family:Dimerization cofactor of HNF-1 alpha
40c3io8D_
not modelled 5.3 27
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: biml12f in complex with bcl-xl
41c2pmzN_
not modelled 5.2 10
PDB header:translation, transferase
Chain: N: PDB Molecule:dna-directed rna polymerase subunit n;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
42c3io8B_
not modelled 5.1 29
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: biml12f in complex with bcl-xl

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Transmembrane helix prediction 

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