Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3658c_(-)_4096317_4097117
DateFri Aug 9 18:20:34 BST 2019
Unique Job ID15409bdd61531d0a
SequenceMSGIASAALI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.994 Y:45.812 Z:35.530
Model (left) based on template c3c1qA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:general secretion pathway protein f;
PDBTitle: the three-dimensional structure of the cytoplasmic domains of epsf2 from the type 2 secretion system of vibrio cholerae
Confidence and coverage
Confidence: 99.2% Coverage: 40%
106 residues ( 40% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c1qA_



99.2 14
PDB header:transport protein
Chain: A: PDB Molecule:general secretion pathway protein f;
PDBTitle: the three-dimensional structure of the cytoplasmic domains of epsf2 from the type 2 secretion system of vibrio cholerae
2c5nbgA_



99.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:general secretion pathway protein f;
PDBTitle: structure of the cytoplasmic domain i of outf in the d. dadantii type2 ii secretion system
3c2whnA_



98.3 11
PDB header:protein transport
Chain: A: PDB Molecule:pilus assembly protein pilc;
PDBTitle: n-terminal domain from the pilc type iv pilus biogenesis protein
4c4hhxA_



97.3 13
PDB header:membrane protein
Chain: A: PDB Molecule:toxin coregulated pilus biosynthesis protein e;
PDBTitle: structure of cytoplasmic domain of tcpe from vibrio cholerae
5c5n9yB_



89.1 12
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
6c6bs9A_



82.2 19
PDB header:transport protein
Chain: A: PDB Molecule:stage iii sporulation protein ab;
PDBTitle: stage iii sporulation protein ab (spoiiiab)
7c4i0xA_



35.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
8c4ev6E_



32.5 13
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
9c5ezeG_



27.9 18
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
10c5ezeF_



23.0 19
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
11c5f2yA_



23.0 19
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
12c5ezeA_



23.0 19
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
13c5ezeE_



22.9 19
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
14c5f2yE_



22.9 19
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
15c5ezeC_



22.9 19
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
16c6a6xC_



22.7 17
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
17c5f2yG_



22.5 19
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
18c5f2yF_



10.9 17
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
19c5f2yB_



10.0 17
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
20c3l8jA_



8.1 17
PDB header:protein binding
Chain: A: PDB Molecule:programmed cell death protein 10;
PDBTitle: crystal structure of ccm3, a cerebral cavernous malformation protein2 critical for vascular integrity
21c5f2yC_



not modelled 5.5 17
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below