Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3665c_(dppB)_4104709_4105635
DateFri Aug 9 18:20:35 BST 2019
Unique Job IDa748acc6d4b08ba0
SequenceMGWYVARRVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.651 Y:44.555 Z:79.256
Model (left) based on template c4ymuC_
Top template information
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
Confidence and coverage
Confidence: 99.9% Coverage: 67%
206 residues ( 67% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
301 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ymuC_



99.9 13
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
2d3dhwa1



99.9 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
3c3d31D_



99.9 14
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
4d3d31c1



99.9 14
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
5d2onkc1



99.9 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
6c2onkC_



99.9 17
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
7c4tqvI_



99.9 10
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
8d2r6gf2



99.8 12
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
9c2r6gF_



99.8 13
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
10c3fh6F_



99.8 12
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
11c4tqvJ_



99.6 9
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
12d2r6gg1



99.4 12
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



90.9 14
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14c5lj7B_



39.9 14
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
15c5xu1M_



38.7 11
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
16c5nikK_



35.5 11
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
17c2nd4A_



25.0 21
PDB header:hydrolase receptor
Chain: A: PDB Molecule:amylase-binding protein abpa;
PDBTitle: a distinct sortase srtb anchors and processes a streptococcal adhesin2 abpa with a novel structural property
18c6r6bI_



22.7 15
PDB header:protein transport
Chain: I: PDB Molecule:surface presentation of antigens protein spaq;
PDBTitle: structure of the core shigella flexneri type iii secretion system2 export gate complex sctrst (spa24/spa9/spa29).
19c6f2dJ_



22.3 24
PDB header:protein transport
Chain: J: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
20c6f2dI_



22.3 24
PDB header:protein transport
Chain: I: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
21c5x5yG_



not modelled 16.3 17
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
22c1wz4A_



not modelled 13.6 67
PDB header:gene regulation
Chain: A: PDB Molecule:major surface antigen;
PDBTitle: solution conformation of adr subtype hbv pre-s2 epitope
23c4aezC_



not modelled 13.3 12
PDB header:cell cycle
Chain: C: PDB Molecule:mitotic spindle checkpoint component mad3;
PDBTitle: crystal structure of mitotic checkpoint complex
24c2cw1A_



not modelled 11.5 26
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
25c2hw2A_



not modelled 11.5 30
PDB header:transferase
Chain: A: PDB Molecule:rifampin adp-ribosyl transferase;
PDBTitle: crystal structure of rifampin adp-ribosyl transferase in complex with2 rifampin
26c6mjpG_



not modelled 9.4 16
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
27c4p16A_



not modelled 9.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:orf1a;
PDBTitle: crystal structure of the papain-like protease of middle-east2 respiratory syndrome coronavirus
28c2jwaA_



not modelled 9.1 30
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
29c2ks1A_



not modelled 9.1 30
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
30c5ws4A_



not modelled 8.9 17
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
31c2yevC_



not modelled 8.5 30
PDB header:electron transport
Chain: C: PDB Molecule:caa3-type cytochrome oxidase subunit iv;
PDBTitle: structure of caa3-type cytochrome oxidase
32d1n0ua5



not modelled 7.6 17
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
33d2d6fc1



not modelled 7.5 15
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
34c5l75F_



not modelled 7.3 17
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
35c5l75G_



not modelled 7.0 18
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
36d1qy9a1



not modelled 6.8 10
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
37d1tdpa_



not modelled 6.7 19
Fold:Bromodomain-like
Superfamily:Bacteriocin immunity protein-like
Family:Carnobacteriocin B2 immunity protein
38c3ednB_



not modelled 6.7 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:phenazine biosynthesis protein, phzf family;
PDBTitle: crystal structure of the bacillus anthracis phenazine2 biosynthesis protein, phzf family
39c4yptA_



not modelled 6.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: x-ray structural of three tandemly linked domains of nsp3 from murine2 hepatitis virus at 2.60 angstroms resolution
40c4ndlC_



not modelled 6.3 28
PDB header:de novo protein
Chain: C: PDB Molecule:enh-c2b, computational designed homodimer;
PDBTitle: computational design and experimental verification of a symmetric2 homodimer
41c1g2hA_



not modelled 6.2 18
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
42d1g2ha_



not modelled 6.2 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
43c2ka1A_



not modelled 6.1 32
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
44c2ka2B_



not modelled 6.1 32
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
45c2ka1B_



not modelled 6.1 32
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
46c2ka2A_



not modelled 6.1 32
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
47d1xuba1



not modelled 6.1 28
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
48d1u0ka1



not modelled 5.8 15
Fold:Diaminopimelate epimerase-like
Superfamily:Diaminopimelate epimerase-like
Family:PhzC/PhzF-like
49c5lj3C_



not modelled 5.7 31
PDB header:splicing
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
50d1ntca_



not modelled 5.7 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
51c2m8gX_



not modelled 5.2 9
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
52c2b9sB_



not modelled 5.1 67
PDB header:isomerase/dna
Chain: B: PDB Molecule:dna topoisomerase i-like protein;
PDBTitle: crystal structure of heterodimeric l. donovani topoisomerase i-2 vanadate-dna complex

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below