Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3669_(-)_4111005_4111523
DateFri Aug 9 18:20:36 BST 2019
Unique Job ID5010a68521e447f5
SequenceVSKIDRKNGV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.206 Y:42.013 Z:42.512
Model (left) based on template c5x5yF_
Top template information
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
Confidence and coverage
Confidence: 75.5% Coverage: 34%
59 residues ( 34% of your sequence) have been modelled with 75.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5x5yF_
75.5 8
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
2c4kt0F_
59.6 16
PDB header:electron transport
Chain: F: PDB Molecule:photosystem i subunit iii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
3d1jb0f_
56.3 16
Fold:Single transmembrane helix
Superfamily:Subunit III of photosystem I reaction centre, PsaF
Family:Subunit III of photosystem I reaction centre, PsaF
4c2kncA_
54.7 25
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
5c5x5yG_
54.7 15
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
6c6mjpG_
54.4 16
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
7c6fosF_
53.0 13
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit ii;
PDBTitle: cyanidioschyzon merolae photosystem i
8c5z1lL_
52.6 47
PDB header:protein fibril
Chain: L: PDB Molecule:flagellin;
PDBTitle: cryo-em structure of methanoccus maripaludis archaellum
9c5tfyJ_
51.6 29
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
10c6mjpF_
51.2 11
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
11c5o4uK_
48.8 47
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
12c6igzF_
48.6 16
PDB header:plant protein
Chain: F: PDB Molecule:psaf;
PDBTitle: structure of psi-lhci
13c2jp3A_
46.6 32
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
14c5xu1M_
42.9 14
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
15c6ijjF_
40.9 13
PDB header:membrane protein
Chain: F: PDB Molecule:psaf;
PDBTitle: photosystem i of chlamydomonas reinhardtii
16c4hb1A_
31.9 29
PDB header:designed helical bundle
Chain: A: PDB Molecule:dhp1;
PDBTitle: a designed four helix bundle protein.
17d2in1a1
29.2 24
Fold:UBC-like
Superfamily:UBC-like
Family:UFC1-like
18c5ws4A_
28.7 8
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
19c3kpaB_
27.6 10
PDB header:ligase
Chain: B: PDB Molecule:probable ubiquitin fold modifier conjugating enzyme;
PDBTitle: ubiquitin fold modifier conjugating enzyme from leishmania major2 (probable)
20c2zxeG_
26.7 32
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
21c3fewX_
not modelled 25.4 11
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a duplicated2 receptor binding domain
22c2oarA_
not modelled 24.1 14
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
23c2jo1A_
not modelled 21.7 11
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
24c2mkvA_
not modelled 21.2 14
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
25c6mctJ_
not modelled 20.4 32
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
26c6mctN_
not modelled 20.4 32
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
27c6mq2D_
not modelled 20.4 32
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
28c6mctB_
not modelled 20.4 32
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
29c6mctG_
not modelled 20.4 32
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
30c6mpwA_
not modelled 20.4 32
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
31c6mctA_
not modelled 20.4 32
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
32c6mctI_
not modelled 20.4 32
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
33c6mctD_
not modelled 20.4 32
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
34c6mctE_
not modelled 20.4 32
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
35c6mctH_
not modelled 20.4 32
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
36c6mctL_
not modelled 20.4 32
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
37c6mctC_
not modelled 20.4 32
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
38c6mctM_
not modelled 20.4 32
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
39c6mctF_
not modelled 20.4 32
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
40c6mctO_
not modelled 20.4 32
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
41c6mctK_
not modelled 20.4 32
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
42c2kdcC_
not modelled 17.4 14
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles
43c5n9yB_
not modelled 17.2 12
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
44c5l75G_
not modelled 15.7 18
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
45c2o01F_
not modelled 14.1 15
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit iii, chloroplast;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
46c5l75F_
not modelled 13.5 2
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
47c5nikK_
not modelled 13.2 17
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
48c6hwhX_
not modelled 12.1 16
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
49c3d36C_
not modelled 11.5 13
PDB header:transferase/transferase inhibitor
Chain: C: PDB Molecule:sporulation kinase inhibitor sda;
PDBTitle: how to switch off a histidine kinase: crystal structure of2 geobacillus stearothermophilus kinb with the inhibitor sda
50c5vhxE_
not modelled 10.7 15
PDB header:transport protein
Chain: E: PDB Molecule:glutamate receptor 2,germ cell-specific gene 1-like
PDBTitle: glua2-1xgsg1l bound to zk
51d1e7la1
not modelled 10.5 23
Fold:LEM/SAP HeH motif
Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains
Family:Recombination endonuclease VII, C-terminal and dimerization domains
52d1k46a_
not modelled 10.2 40
Fold:YopH tyrosine phosphatase N-terminal domain
Superfamily:YopH tyrosine phosphatase N-terminal domain
Family:YopH tyrosine phosphatase N-terminal domain
53c4ev6E_
not modelled 10.2 14
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
54c2l16A_
not modelled 8.7 19
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
55c1tnuL_
not modelled 8.3 9
PDB header:transferase
Chain: L: PDB Molecule:geranylgeranyl transferase type i beta subunit;
PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a gcincckvl peptide derived from rhob
56d1pv0a_
not modelled 8.3 13
Fold:Long alpha-hairpin
Superfamily:Sporulation inhibitor Sda
Family:Sporulation inhibitor Sda
57d1n4qb_
not modelled 8.3 9
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Protein prenyltransferases
58c4l6rA_
not modelled 7.9 15
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562 and glucagon receptor chimera;
PDBTitle: structure of the class b human glucagon g protein coupled receptor
59c2lzsE_
not modelled 7.6 20
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
60c5fcmB_
not modelled 7.5 13
PDB header:cell cycle
Chain: B: PDB Molecule:basal body protein;
PDBTitle: crbld10-n 1-70
61c6c5wA_
not modelled 7.4 9
PDB header:membrane protein
Chain: A: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the mitochondrial calcium uniporter
62c2k1aA_
not modelled 6.6 22
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
63c6mq2A_
not modelled 6.5 30
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
64c6mpwD_
not modelled 6.5 30
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
65c6mq2E_
not modelled 6.5 30
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
66c6mpwB_
not modelled 6.5 30
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
67c6mq2C_
not modelled 6.5 30
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
68c6mpwE_
not modelled 6.5 30
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
69c6mpwC_
not modelled 6.5 30
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
70c6mq2B_
not modelled 6.5 30
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
71c4rndB_
not modelled 6.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: crystal structure of the subunit df-assembly of the eukaryotic v-2 atpase.
72d1sjpa3
not modelled 6.4 39
Fold:GroEL-intermediate domain like
Superfamily:GroEL-intermediate domain like
Family:GroEL-like chaperone, intermediate domain
73c5m87A_
not modelled 6.4 12
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
74c6ithA_
not modelled 6.3 22
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
75c4p79A_
not modelled 6.3 5
PDB header:cell adhesion
Chain: A: PDB Molecule:claudin-15;
PDBTitle: crystal structure of mouse claudin-15
76c5lj7B_
not modelled 6.2 6
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
77c2wsfF_
not modelled 5.9 15
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit iii, chloroplastic;
PDBTitle: improved model of plant photosystem i
78c3jbrE_
not modelled 5.9 14
PDB header:membrane protein
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-1 subunit;
PDBTitle: cryo-em structure of the rabbit voltage-gated calcium channel cav1.12 complex at 4.2 angstrom
79c5nnpG_
not modelled 5.8 35
PDB header:transferase
Chain: G: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of naa15/naa10 bound to hypk-thb
80c2l27B_
not modelled 5.7 46
PDB header:membrane protein, peptide binding protei
Chain: B: PDB Molecule:peptide agonist;
PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist
81c3n23E_
not modelled 5.7 25
PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump
82c6c3oE_
not modelled 5.6 11
PDB header:transport protein
Chain: E: PDB Molecule:atp-binding cassette sub-family c member 8;
PDBTitle: cryo-em structure of human katp bound to atp and adp in quatrefoil2 form
83c5b2gG_
not modelled 5.5 7
PDB header:membrane protein
Chain: G: PDB Molecule:endolysin,claudin-4;
PDBTitle: crystal structure of human claudin-4 in complex with c-terminal2 fragment of clostridium perfringens enterotoxin
84c5xnlX_
not modelled 5.5 20
PDB header:membrane protein
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
85c2kluA_
not modelled 5.4 19
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
86c6roiC_
not modelled 5.4 14
PDB header:lipid transport
Chain: C: PDB Molecule:cell division control protein 50;
PDBTitle: cryo-em structure of the partially activated drs2p-cdc50p
87c2ww9B_
not modelled 5.4 11
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sss1;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
88c2bbjB_
not modelled 5.3 23
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter

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Transmembrane helix prediction 

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