Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3672c_(-)_4113699_4114520
DateFri Aug 9 18:20:36 BST 2019
Unique Job IDc92f4785e232fb4c
SequenceMSAGGTPLQA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.141 Y:38.838 Z:47.057
Model (left) based on template c5t3pB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:peroxisomal coenzyme a diphosphatase nudt7;
PDBTitle: crystal structure of human peroxisomal coenzyme a diphosphatase nudt7
Confidence and coverage
Confidence:100.0% Coverage: 67%
182 residues ( 67% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5t3pB_



100.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:peroxisomal coenzyme a diphosphatase nudt7;
PDBTitle: crystal structure of human peroxisomal coenzyme a diphosphatase nudt7
2d1nqza_



100.0 32
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
3c5lf8A_



99.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 17;
PDBTitle: human nucleoside diphosphate-linked moiety x motif 17 (nudt17)
4c3gz8C_



99.7 21
PDB header:dna binding protein
Chain: C: PDB Molecule:mutt/nudix family protein;
PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis nrtr2 complexed with adp ribose
5c3h95A_



99.7 19
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6;
PDBTitle: crystal structure of the nudix domain of nudt6
6c3qsjA_



99.6 37
PDB header:hydrolase
Chain: A: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius
7c5bonC_



99.6 18
PDB header:hydrolase
Chain: C: PDB Molecule:probable 8-oxo-dgtp diphosphatase nudt15;
PDBTitle: crystal structure of human nudt15 (mth2)
8d2fb1a2



99.6 16
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
9d2fkba1



99.6 20
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
10d1sjya_



99.6 25
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
11c3gz6A_



99.6 19
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of shewanella oneidensis nrtr complexed with a 27mer2 dna
12c3i9xA_



99.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua
13c4kyxA_



99.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribose pyrophosphatase mutt;
PDBTitle: crystal structure of adp-ribose pyrophosphatase mutt from rickettsia2 felis
14c2yvoA_



99.5 24
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8
15c3hhjA_



99.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: crystal structure of mutator mutt from bartonella henselae
16c4dywA_



99.5 24
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt nudix hydrolase from burkholderia2 pseudomallei
17c2r5wA_



99.5 18
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase;
PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis
18c2rrkA_



99.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:ctp pyrophosphohydrolase;
PDBTitle: solution structure of the e. coli orf135 protein
19c5gg7A_



99.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family protein;
PDBTitle: crystal structure of mycobacterium smegmatis mutt1 in complex with 8-2 oxo-dgtp, 8-oxo-dgmp and pyrophosphate (i)
20d1ktga_



99.5 23
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
21c3grnB_



not modelled 99.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:mutt related protein;
PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1
22d2b0va1



not modelled 99.5 15
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
23c3exqA_



not modelled 99.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:nudix family hydrolase;
PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis
24c2fb1A_



not modelled 99.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron
25c2qjoB_



not modelled 99.5 18
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase;
PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp.
26d1ppva_



not modelled 99.5 13
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
27c3dkuB_



not modelled 99.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:putative phosphohydrolase;
PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from escherichia2 coli k-1
28c3n77B_



not modelled 99.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside triphosphatase nudi;
PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2
29d1hzta_



not modelled 99.5 13
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
30d1puna_



not modelled 99.5 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
31c2kdvA_



not modelled 99.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:rna pyrophosphohydrolase;
PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli
32c3id9B_



not modelled 99.5 17
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis
33d1u20a1



not modelled 99.5 24
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
34d1vk6a2



not modelled 99.5 19
Fold:Nudix
Superfamily:Nudix
Family:NADH pyrophosphatase
35d2fvva1



not modelled 99.5 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
36c2fvvA_



not modelled 99.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase 1;
PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1
37c4zbpC_



not modelled 99.5 17
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase 7;
PDBTitle: crystal structure of the ampcpr-bound atnudt7
38d1irya_



not modelled 99.5 15
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
39d1ryaa_



not modelled 99.5 15
Fold:Nudix
Superfamily:Nudix
Family:GDP-mannose mannosyl hydrolase NudD
40c5gp0F_



not modelled 99.5 24
PDB header:hydrolase
Chain: F: PDB Molecule:nudix hydrolase 1;
PDBTitle: crystal structure of geraniol-nudx1 complex
41c2gb5B_



not modelled 99.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
42d2fmla2



not modelled 99.5 21
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
43c2yyhC_



not modelled 99.5 18
PDB header:hydrolase
Chain: C: PDB Molecule:8-oxo-dgtpase domain;
PDBTitle: crystal structure of nudix family protein from aquifex aeolicus
44c5cfiC_



not modelled 99.5 18
PDB header:hydrolase
Chain: C: PDB Molecule:bis(5'-nucleosyl)-tetraphosphatase (diadenosine
PDBTitle: structural and functional attributes of malaria parasite ap4a2 hydrolase
45c5zrhA_



not modelled 99.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:putative mutator protein mutt2/nudix hydrolase;
PDBTitle: m. smegmatis antimutator protein mutt2 in complex with cmp
46d2azwa1



not modelled 99.5 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
47c3ef5A_



not modelled 99.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:probable pyrophosphohydrolase;
PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp
48c3fjyB_



not modelled 99.5 23
PDB header:hydrolase
Chain: B: PDB Molecule:probable mutt1 protein;
PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis
49c5c7tB_



not modelled 99.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:nudf protein;
PDBTitle: crystal structure of the bdellovibrio bacteriovorus nucleoside2 diphosphate sugar hydrolase in complex with adp-ribose
50d1xsba_



not modelled 99.5 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
51c2jvbA_



not modelled 99.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2;
PDBTitle: solution structure of catalytic domain of ydcp2
52c3r03B_



not modelled 99.4 23
PDB header:hydrolase
Chain: B: PDB Molecule:nudix hydrolase;
PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum
53c6o3pA_



not modelled 99.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
54c3cngC_



not modelled 99.4 18
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
55d1vhza_



not modelled 99.4 21
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
56c5x1xA_



not modelled 99.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: solution nmr structure of dna mismatch repair protein mutt (family2 nudix hydrolase) from methicillin resistant staphylococcus aureus 252
57c2w4eA_



not modelled 99.4 21
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans
58d1g0sa_



not modelled 99.4 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
59c5mp0D_



not modelled 99.4 17
PDB header:hydrolase
Chain: D: PDB Molecule:m7gpppn-mrna hydrolase;
PDBTitle: human m7gpppn-mrna hydrolase (dcp2, nudt20) catalytic domain
60d1jkna_



not modelled 99.4 20
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
61d1vcda1



not modelled 99.4 24
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
62c2pq1B_



not modelled 99.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:ap4a hydrolase;
PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5
63c3fk9B_



not modelled 99.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:mutator mutt protein;
PDBTitle: crystal structure of mmutator mutt protein from bacillus halodurans
64c3sonB_



not modelled 99.4 16
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical nudix hydrolase;
PDBTitle: crystal structure of a putativel nudix hydrolase (lmof2365_2679) from2 listeria monocytogenes str. 4b f2365 at 1.70 a resolution
65d2b06a1



not modelled 99.4 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
66c4hfqB_



not modelled 99.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of udp-x diphosphatase
67c3gg6A_



not modelled 99.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18;
PDBTitle: crystal structure of the nudix domain of human nudt18
68c3q4iA_



not modelled 99.4 27
PDB header:hydrolase
Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein);
PDBTitle: crystal structure of cdp-chase in complex with gd3+
69c3gwyA_



not modelled 99.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis
70c2o1cB_



not modelled 99.4 16
PDB header:hydrolase
Chain: B: PDB Molecule:datp pyrophosphohydrolase;
PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase
71c2fmlB_



not modelled 99.4 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis
72c4jztA_



not modelled 99.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:dgtp pyrophosphohydrolase;
PDBTitle: crystal structure of the bacillus subtilis pyrophosphohydrolase bsrpph2 (e68a mutant) bound to gtp
73c2pqvA_



not modelled 99.4 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae
74c3bm4B_



not modelled 99.3 20
PDB header:hydrolase
Chain: B: PDB Molecule:adp-sugar pyrophosphatase;
PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt5 in complex2 with magnesium and ampcpr
75c3o8sA_



not modelled 99.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribose pyrophosphatase;
PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution
76d1k2ea_



not modelled 99.3 21
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
77d2o5fa1



not modelled 99.3 13
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
78c5lopA_



not modelled 99.3 18
PDB header:rna binding protein
Chain: A: PDB Molecule:klla0f23980p;
PDBTitle: structure of the active form of /k. lactis/ dcp1-dcp2-edc3 decapping2 complex bound to m7gdp
79c4v14A_



not modelled 99.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: structure and function analysis of mutt from the2 psychrofile fish pathogen aliivibrio salmonicida and the3 mesophile vibrio cholerae
80c3edsA_



not modelled 99.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis
81c4ilqA_



not modelled 99.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:ct771;
PDBTitle: 2.60a resolution structure of ct771 from chlamydia trachomatis
82c2qkmF_



not modelled 99.3 17
PDB header:hydrolase
Chain: F: PDB Molecule:spac19a8.12 protein;
PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex
83c3f6aA_



not modelled 99.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens
84c5lf9A_



not modelled 99.2 16
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 22;
PDBTitle: crystal structure of human nudt22
85d1mqea_



not modelled 99.2 21
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
86d2a6ta2



not modelled 99.2 19
Fold:Nudix
Superfamily:Nudix
Family:mRNA decapping enzyme-like
87c2i6kA_



not modelled 99.2 15
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1;
PDBTitle: crystal structure of human type i ipp isomerase complexed with a2 substrate analog
88c3dupB_



not modelled 99.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170
89c3fcmA_



not modelled 99.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a nudix hydrolase from clostridium perfringens
90d1x51a1



not modelled 99.1 17
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
91d1q33a_



not modelled 99.1 22
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
92d1v8ya_



not modelled 99.1 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
93d1viua_



not modelled 99.1 15
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
94c3q91D_



not modelled 99.1 17
PDB header:hydrolase
Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase;
PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14)
95c3f13A_



not modelled 99.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative nudix hydrolase family member;
PDBTitle: crystal structure of putative nudix hydrolase family member from2 chromobacterium violaceum
96c1rrqA_



not modelled 99.0 18
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
97c3rh7A_



not modelled 99.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
98c3e57A_



not modelled 98.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein tm1382;
PDBTitle: crystal structure of tm1382, a putative nudix hydrolase
99c2pnyA_



not modelled 98.9 15
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2;
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
100d1rrqa2



not modelled 98.8 19
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
101c2j8qB_



not modelled 98.6 19
PDB header:nuclear protein
Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5;
PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion.
102c4v1aj_



not modelled 98.3 11
PDB header:ribosome
Chain: J: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
103c3couA_



not modelled 98.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16;
PDBTitle: crystal structure of human nudix motif 16 (nudt16)
104c3kvhA_



not modelled 97.3 21
PDB header:rna binding protein
Chain: A: PDB Molecule:protein syndesmos;
PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein)
105c3p5tE_



not modelled 90.6 19
PDB header:rna binding protein
Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5;
PDBTitle: cfim25-cfim68 complex
106c6drkD_



not modelled 86.6 16
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel, subfamily m,
PDBTitle: structure of trpm2 ion channel receptor by single particle electron2 cryo-microscopy, apo state
107c6mizC_



not modelled 63.4 21
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: human trpm2 ion channel in an adpr-bound state
108c1vw46_



not modelled 62.8 24
PDB header:ribosome
Chain: 6: PDB Molecule:54s ribosomal protein l17, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
109c6d73B_



not modelled 57.6 29
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel, subfamily m;
PDBTitle: cryo-em structure of the zebrafish trpm2 channel in the presence of2 ca2+
110c5ghaF_



not modelled 28.1 39
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
111d1aopa2



not modelled 21.8 19
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below