Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3675_(-)_4116180_4116557
DateFri Aug 9 18:20:36 BST 2019
Unique Job ID6fdf82facc7329bb
SequenceMFTLLVSWLL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.357 Y:34.569 Z:27.412
Model (left) based on template d1rfea_
Top template information
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
Confidence and coverage
Confidence: 40.5% Coverage: 26%
33 residues ( 26% of your sequence) have been modelled with 40.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1rfea_
40.5 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
2c6gqaD_
39.8 36
PDB header:cell cycle
Chain: D: PDB Molecule:cell cycle protein gpsb;
PDBTitle: cell division regulator s. pneumoniae gpsb
3c2wukD_
35.3 45
PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
4c4ug3C_
32.9 36
PDB header:cell cycle
Chain: C: PDB Molecule:cell cycle protein gpsb;
PDBTitle: b. subtilis gpsb n-terminal domain
5c4ug1A_
29.9 45
PDB header:cell cycle
Chain: A: PDB Molecule:cell cycle protein gpsb;
PDBTitle: gpsb n-terminal domain
6c3h36A_
29.6 53
PDB header:transferase
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: structure of an uncharacterized domain in polyribonucleotide2 nucleotidyltransferase from streptococcus mutans ua159
7c4fe1M_
15.5 31
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
8d1jb0m_
15.5 31
Fold:Single transmembrane helix
Superfamily:Subunit XII of photosystem I reaction centre, PsaM
Family:Subunit XII of photosystem I reaction centre, PsaM
9c1jb0M_
15.5 31
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem 1 reaction centre subunit xii;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
10c5da9D_
15.3 24
PDB header:hydrolase
Chain: D: PDB Molecule:putative double-strand break protein;
PDBTitle: atp-gamma-s bound rad50 from chaetomium thermophilum in complex with2 the rad50-binding domain of mre11
11c6g04A_
13.5 17
PDB header:transport protein
Chain: A: PDB Molecule:pre-rrna-processing protein tsr2;
PDBTitle: nmr solution structure of yeast tsr2(1-152) in complex with s26a(100-2 119)
12d2py8a1
12.4 20
Fold:RbcX-like
Superfamily:RbcX-like
Family:RbcX-like
13c5xj0Y_
12.2 24
PDB header:transferase/transcription
Chain: Y: PDB Molecule:gp76;
PDBTitle: t. thermophilus rna polymerase holoenzyme bound with gp39 and gp76
14d1w4ha1
12.1 38
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
15c3tgvD_
11.4 19
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
16c3f7eB_
11.1 19
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
17d1k4ta1
10.3 43
Fold:Long alpha-hairpin
Superfamily:Eukaryotic DNA topoisomerase I, dispensable insert domain
Family:Eukaryotic DNA topoisomerase I, dispensable insert domain
18c2ksdA_
10.3 24
PDB header:transferase
Chain: A: PDB Molecule:aerobic respiration control sensor protein arcb;
PDBTitle: backbone structure of the membrane domain of e. coli histidine kinase2 receptor arcb, center for structures of membrane proteins (csmp)3 target 4310c
19c1kmiZ_
9.9 10
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
20d1j5ya2
9.6 19
Fold:HPr-like
Superfamily:Putative transcriptional regulator TM1602, C-terminal domain
Family:Putative transcriptional regulator TM1602, C-terminal domain
21c1pk1A_
not modelled 8.9 14
PDB header:transcription repression
Chain: A: PDB Molecule:polyhomeotic-proximal chromatin protein;
PDBTitle: hetero sam domain structure of ph and scm.
22d2f66c1
not modelled 8.5 27
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS37 C-terminal domain-like
23c2hhzA_
not modelled 8.4 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
24d1w9aa_
not modelled 8.0 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
25c5j8yC_
not modelled 8.0 25
PDB header:nuclear protein
Chain: C: PDB Molecule:polycomb protein sfmbt;
PDBTitle: crystal structure of the scm-sam and sfmbt-sam heterodimer
26c1pk1B_
not modelled 7.7 18
PDB header:transcription repression
Chain: B: PDB Molecule:sex comb on midleg cg9495-pa;
PDBTitle: hetero sam domain structure of ph and scm.
27d1ldda_
not modelled 7.5 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:SCF ubiquitin ligase complex WHB domain
28c4pzoE_
not modelled 7.5 14
PDB header:dna binding protein
Chain: E: PDB Molecule:polyhomeotic-like protein 3;
PDBTitle: crystal structure of phc3 sam l967r
29c3bq7A_
not modelled 7.1 18
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase delta;
PDBTitle: sam domain of diacylglycerol kinase delta1 (e35g)
30d1pk1c1
not modelled 7.1 14
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
31d1pk3a1
not modelled 7.1 18
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
32d1z0jb1
not modelled 7.0 21
Fold:Long alpha-hairpin
Superfamily:Rabenosyn-5 Rab-binding domain-like
Family:Rabenosyn-5 Rab-binding domain-like
33c2dkzA_
not modelled 6.9 14
PDB header:signaling protein
Chain: A: PDB Molecule:hypothetical protein loc64762;
PDBTitle: solution structure of the sam_pnt-domain of the2 hypothetical protein loc64762
34d1kw4a_
not modelled 6.9 14
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
35c3kfuJ_
not modelled 6.6 21
PDB header:ligase/rna
Chain: J: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c;
PDBTitle: crystal structure of the transamidosome
36c5lkdB_
not modelled 6.6 32
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase omega-like 2;
PDBTitle: crystal structure of the xi glutathione transferase ecm4 from2 saccharomyces cerevisiae in complex with glutathione
37c4qoyE_
not modelled 6.4 23
PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase (dihydrolipoyltransacetylase
PDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
38d2af7a1
not modelled 6.3 21
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
39c3iz5n_
not modelled 5.9 25
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
40d2hq9a1
not modelled 5.6 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
41d2fgca1
not modelled 5.6 27
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
42c3fhkF_
not modelled 5.5 54
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide isomerase
43d1rp1a2
not modelled 5.5 27
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
44c1zwvA_
not modelled 5.4 19
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase component of branched-
PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase
45c3u0iA_
not modelled 5.3 12
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
46c1v06A_
not modelled 5.3 22
PDB header:dna-binding protein
Chain: A: PDB Molecule:hmg box-containing protein 1;
PDBTitle: axh domain of the transcription factor hbp1 from m.musculus
47c3j39k_
not modelled 5.2 33
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l12;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
48c2penE_
not modelled 5.2 20
PDB header:chaperone
Chain: E: PDB Molecule:orf134;
PDBTitle: crystal structure of rbcx, crystal form i
49d1bala_
not modelled 5.1 38
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
50c1w4kA_
not modelled 5.1 22
PDB header:transferase
Chain: A: PDB Molecule:pyruvate dehydrogenase e2;
PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions
51c3izcn_
not modelled 5.0 47
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below