Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3678A_(-)_4118708_4118869
DateFri Aug 9 18:20:37 BST 2019
Unique Job IDec2fe5966edb34c2
SequenceMTQPTAWEYA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.264 Y:13.180 Z:13.210
Model (left) based on template c2rqyA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure and dynamics of mouse armet
Confidence and coverage
Confidence: 38.4% Coverage: 19%
10 residues ( 19% of your sequence) have been modelled with 38.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rqyA_



38.4 60
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure and dynamics of mouse armet
2c2kveA_



34.0 60
PDB header:hormone
Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor;
PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf)
3c4bitA_



31.3 60
PDB header:signaling protein
Chain: A: PDB Molecule:cerebral dopamine neurotrophic factor;
PDBTitle: solution structure of cerebral dopamine neurotrophic factor (cdnf)
4c2w51A_



21.0 60
PDB header:hormone
Chain: A: PDB Molecule:protein armet;
PDBTitle: human mesencephalic astrocyte-derived neurotrophic factor (manf)
5c2n7fA_



19.9 50
PDB header:toxin
Chain: A: PDB Molecule:muo-conotoxin mfvia;
PDBTitle: nmr solution structure of muo-conotoxin mfvia
6c1rmkA_



16.8 60
PDB header:toxin
Chain: A: PDB Molecule:mu-o-conotoxin mrvib;
PDBTitle: solution structure of conotoxin mrvib
7d1rmka_



16.8 60
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
8d1o59a2



13.8 57
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Allantoicase repeat
9d1v8da_



11.9 50
Fold:TTHA0583/YokD-like
Superfamily:TTHA0583/YokD-like
Family:Hypothetical protein TT1679
10d2b3aa1



11.9 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
11c1v8dC_



11.1 50
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein (tt1679);
PDBTitle: crystal structure of the conserved hypothetical protein2 tt1679 from thermus thermophilus
12d1ofda1



10.4 26
Fold:Single-stranded right-handed beta-helix
Superfamily:Alpha subunit of glutamate synthase, C-terminal domain
Family:Alpha subunit of glutamate synthase, C-terminal domain
13d1ef5a_



10.3 42
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
14c2kywA_



9.3 38
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion exoprotein;
PDBTitle: solution nmr structure of a domain of adhesion exoprotein from2 pediococcus pentosaceus, northeast structural genomics consortium3 target ptr41o
15c4o7kA_



8.7 28
PDB header:antitumor protein
Chain: A: PDB Molecule:protein osa;
PDBTitle: crystal structure of oncogenic suppression activity protein - a2 plasmid fertility inhibition factor
16d1ea0a1



8.4 26
Fold:Single-stranded right-handed beta-helix
Superfamily:Alpha subunit of glutamate synthase, C-terminal domain
Family:Alpha subunit of glutamate synthase, C-terminal domain
17d1e0ba_



7.5 19
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
18c2zdjA_



7.4 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttma177;
PDBTitle: crystal structure of ttma177, a hypothetical protein from2 thermus thermophilus phage tma
19c6c0fs_



7.1 21
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l20-a;
PDBTitle: yeast nucleolar pre-60s ribosomal subunit (state 2)
20c2m7cA_



6.9 55
PDB header:de novo protein
Chain: A: PDB Molecule:trp-cage mini-protein;
PDBTitle: circular permutation of the trp-cage: fold rescue upon addition of a2 hydrophobic staple
21d1lfda_



not modelled 6.9 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
22c3kh0A_



not modelled 6.6 25
PDB header:signaling protein
Chain: A: PDB Molecule:ral guanine nucleotide dissociation stimulator;
PDBTitle: crystal structure of the ras-association (ra) domain of ralgds
23d1d2zb_



not modelled 6.5 25
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
24c2vhfB_



not modelled 6.4 38
PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase cyld;
PDBTitle: structure of the cyld usp domain
25c2gnxA_



not modelled 6.3 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: x-ray structure of a hypothetical protein from mouse mm.209172
26c1icfB_



not modelled 6.0 33
PDB header:hydrolase
Chain: B: PDB Molecule:protein (cathepsin l: light chain);
PDBTitle: crystal structure of mhc class ii associated p41 ii fragment in2 complex with cathepsin l
27c2dmxA_



not modelled 5.7 23
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily b member 8;
PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8
28d1xbla_



not modelled 5.7 31
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
29d2v4ja2



not modelled 5.7 34
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
30c3ov5A_



not modelled 5.6 50
PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: atomic structure of the xanthomonas citri virb7 globular domain.
31d1ji6a1



not modelled 5.4 28
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
32d2bjra2



not modelled 5.4 55
Fold:MFPT repeat-like
Superfamily:MFPT repeat-like
Family:MFPT repeat

Binding site prediction 

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