Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3681c_(whiB4)_4121376_4121732
DateFri Aug 9 18:20:37 BST 2019
Unique Job ID3df56510b1529ca8
SequenceVSGTRPAARR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.024 Y:27.951 Z:35.738
Model (left) based on template c5oayA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
Confidence and coverage
Confidence:100.0% Coverage: 58%
69 residues ( 58% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5oayA_



100.0 45
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
2c4unfA_



49.0 33
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
3d1rrqa1



27.7 38
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
4c1rrqA_



27.4 39
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
5c4ywcD_



22.4 54
PDB header:transcription regulator
Chain: D: PDB Molecule:protein tify 7;
PDBTitle: crystal structure of myc3(5-242) fragment in complex with jaz9(218-2 239) peptide
6d1orna_



21.1 31
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
7c4ywcC_



20.4 54
PDB header:transcription regulator
Chain: C: PDB Molecule:protein tify 7;
PDBTitle: crystal structure of myc3(5-242) fragment in complex with jaz9(218-2 239) peptide
8d1kg2a_



20.2 29
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
9c3pybB_



20.1 23
PDB header:isomerase
Chain: B: PDB Molecule:ent-copalyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of ent-copalyl diphosphate synthase from arabidopsis2 thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
10c2wj8N_



19.8 29
PDB header:rna binding protein/rna
Chain: N: PDB Molecule:nucleoprotein;
PDBTitle: respiratory syncitial virus ribonucleoprotein
11c4uobA_



19.8 25
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
12c3saeA_



19.0 28
PDB header:lyase
Chain: A: PDB Molecule:alpha-bisabolene synthase;
PDBTitle: structure of a three-domain sesquiterpene synthase: a prospective2 target for advanced biofuels production
13d1keaa_



18.7 23
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
14c5fvcF_



16.3 21
PDB header:viral protein
Chain: F: PDB Molecule:hmpv nucleoprotein;
PDBTitle: structure of rna-bound decameric hmpv nucleoprotein
15c1vd3A_



16.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:rnase ngr3;
PDBTitle: ribonuclease nt in complex with 2'-ump
16c6f40P_



16.1 0
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: rna polymerase iii open complex
17c2pqxA_



15.8 32
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease i;
PDBTitle: e. coli rnase 1 (in vivo folded)
18c5fj9P_



15.3 8
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase iii subunit rpc6;
PDBTitle: cryo-em structure of yeast apo rna polymerase iii at 4.6 a
19c3n5nX_



14.3 46
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
20c3m1uB_



13.8 40
PDB header:hydrolase
Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase;
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution
21c3p5rB_



not modelled 13.0 22
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
22c3zs9D_



not modelled 12.5 33
PDB header:hydrolase/transport protein
Chain: D: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
23c4rs9B_



not modelled 12.2 33
PDB header:transcription regulator
Chain: B: PDB Molecule:protein tify 7;
PDBTitle: structure of myc3 n-terminal jaz-binding domain [44-238] in complex2 with jas motif of jaz9
24c1i8yA_



not modelled 11.8 60
PDB header:cytokine
Chain: A: PDB Molecule:granulin-1;
PDBTitle: semi-automatic structure determination of the cg1 3-302 peptide based on aria
25d1i8ya_



not modelled 11.8 60
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat
26c6dx2A_



not modelled 10.4 29
PDB header:hydrolase, protein binding
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from dera ghazi2 khan virus
27d2abka_



not modelled 9.1 30
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
28c3gycB_



not modelled 8.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:putative glycoside hydrolase;
PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
29d1k1xa1



not modelled 8.2 57
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
30d1b4ua_



not modelled 6.9 23
Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
31d2f62a1



not modelled 6.8 15
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:N-deoxyribosyltransferase
32c4l69A_



not modelled 6.7 29
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: rv2372c of mycobacterium tuberculosis is rsme like methyltransferse
33c1hjiB_



not modelled 6.3 42
PDB header:bacteriophage hk022
Chain: B: PDB Molecule:nun-protein;
PDBTitle: bacteriophage hk022 nun-protein-nutboxb-rna complex
34c2ru1A_



not modelled 6.2 44
PDB header:hormone
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of esf3
35c3zs9C_



not modelled 6.0 33
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
36c1y698_



not modelled 5.9 26
PDB header:ribosome
Chain: 8: PDB Molecule:ribosome-recycling factor;
PDB Fragment:unp residues 1-30 and 106-185; PDBTitle: rrf domain i in complex with the 50s ribosomal subunit from2 deinococcus radiodurans
37d1v54d_



not modelled 5.8 22
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
38c3s9vD_



not modelled 5.8 32
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
39c2iu9C_



not modelled 5.7 26
PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine
PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)
40c2y69Q_



not modelled 5.7 22
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
41c2ormA_



not modelled 5.6 22
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
42d1wo9a_



not modelled 5.3 50
Fold:PMP inhibitors
Superfamily:PMP inhibitors
Family:PMP inhibitors

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