Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3688c_(-)_4130071_4130535
DateFri Aug 9 18:20:38 BST 2019
Unique Job ID51eab8980f7ec3cb
SequenceMAELKSQLRS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.690 Y:45.793 Z:44.279
Model (left) based on template d1ng6a_
Top template information
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/YqeY domain
Confidence and coverage
Confidence:100.0% Coverage: 95%
147 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ng6a_



100.0 33
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/YqeY domain
2c3ip4B_



99.0 13
PDB header:ligase
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: the high resolution structure of gatcab
3c3al0B_



99.0 10
PDB header:ligase/rna
Chain: B: PDB Molecule:aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit b;
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
4c4ye6A_



89.0 22
PDB header:ligase
Chain: A: PDB Molecule:glutamine--trna ligase;
PDBTitle: the crystal structure of the intact human glnrs
5c3tl4X_



78.6 14
PDB header:ligase
Chain: X: PDB Molecule:glutaminyl-trna synthetase;
PDBTitle: crystal structure of the trna binding domain of glutaminyl-trna2 synthetase from saccharomyces cerevisiae
6d1hwxa2



65.8 19
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
7c4yycA_



65.8 15
PDB header:transferase
Chain: A: PDB Molecule:putative trimethylamine methyltransferase;
PDBTitle: crystal structure of trimethylamine methyltransferase from2 sinorhizobium meliloti in complex with unknown ligand
8d1l1fa2



62.3 19
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
9c5k12F_



54.0 19
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate dehydrogenase 1, mitochondrial;
PDBTitle: cryo-em structure of glutamate dehydrogenase at 1.8 a resolution
10c2lkyA_



51.7 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
11d1z1za1



46.1 25
Fold:Phage tail protein-like
Superfamily:Phage tail protein-like
Family:Lambda phage gpU-like
12d1euza2



45.2 28
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
13c2m0nA_



44.0 14
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of a duf3349 annotated protein from mycobacterium2 abscessus, mab_3403c. seattle structural genomics center for3 infectious disease target myaba.17112.a.a2
14c2kvcA_



42.9 19
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
15c2yfqA_



39.6 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus
16c5mz2I_



38.5 25
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
17c5eu0B_



38.3 22
PDB header:toxin
Chain: B: PDB Molecule:antitoxin 1;
PDBTitle: fic domain of bep1 from bartonella rochalimae in complex with biaa
18d1rbli_



38.2 33
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
19d1bgva2



38.0 14
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
20d1svdm1



37.8 35
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
21d1bxni_



not modelled 37.5 19
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
22d1bwvs_



not modelled 37.4 30
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
23d1gtma2



not modelled 36.7 18
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
24c2d7dB_



not modelled 34.8 27
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
25c5nv3P_



not modelled 33.4 24
PDB header:lyase
Chain: P: PDB Molecule:ribulose bisphosphate carboxylase small chain 1;
PDBTitle: structure of rubisco from rhodobacter sphaeroides in complex with cabp
26c2qneA_



not modelled 31.4 18
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution
27c2ybvN_



not modelled 30.6 38
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
28c6g7oA_



not modelled 29.8 11
PDB header:membrane protein
Chain: A: PDB Molecule:alkaline ceramidase 3,soluble cytochrome b562;
PDBTitle: crystal structure of human alkaline ceramidase 3 (acer3) at 2.72 angstrom resolution
29d1v9la2



not modelled 27.2 18
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
30d1uzhc1



not modelled 27.0 43
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
31c2l7kA_



not modelled 25.7 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein cd1104.2 from clostridium difficile,2 northeast structural genomics consortium target cfr130
32d1heya_



not modelled 23.1 17
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
33c4fetA_



not modelled 23.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:spore cortex-lytic enzyme prepeptide;
PDBTitle: catalytic domain of germination-specific lytic tansglycosylase sleb2 from bacillus anthracis
34d1b26a2



not modelled 22.3 16
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
35c3ol4B_



not modelled 22.0 11
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
36c3mixA_



not modelled 21.9 18
PDB header:protein transport
Chain: A: PDB Molecule:flagellar biosynthesis protein flha;
PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha
37c2l4bA_



not modelled 21.0 10
PDB header:transferase
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a
38c6cfxD_



not modelled 20.1 20
PDB header:dna binding protein
Chain: D: PDB Molecule:upf0335 protein ase63_04290;
PDBTitle: bosea sp gapr solved in the presence of dna
39c3ilhA_



not modelled 19.9 29
PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
40c1nr1A_



not modelled 19.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase 1;
PDBTitle: crystal structure of the r463a mutant of human glutamate dehydrogenase
41c3a5iB_



not modelled 19.2 21
PDB header:protein transport
Chain: B: PDB Molecule:flagellar biosynthesis protein flha;
PDBTitle: structure of the cytoplasmic domain of flha
42d1ir1s_



not modelled 18.4 45
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
43d1gk8i_



not modelled 17.8 45
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
44d1bvua2



not modelled 17.3 13
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
45c4qpjC_



not modelled 16.9 21
PDB header:signaling protein/dna binding protein
Chain: C: PDB Molecule:cell cycle response regulator ctra;
PDBTitle: 2.7 angstrom structure of a phosphotransferase in complex with a2 receiver domain
46d1jbea_



not modelled 16.5 17
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
47d2v6ai1



not modelled 15.7 45
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
48c2h1oH_



not modelled 15.3 18
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
49c3gl9B_



not modelled 15.1 10
PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
50d1wdds_



not modelled 14.9 35
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
51c4d6yA_



not modelled 14.8 25
PDB header:signaling protein
Chain: A: PDB Molecule:bacterial regulatory, fis family protein;
PDBTitle: crystal structure of the receiver domain of ntrx from2 brucella abortus in complex with beryllofluoride and3 magnesium
52c4q7eA_



not modelled 14.7 20
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator of a two component regulatory system;
PDBTitle: non-phosphorylated hemr receiver domain from leptospira biflexa
53d2a6aa2



not modelled 14.3 19
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
54d1bkja_



not modelled 14.2 14
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
55c5dclB_



not modelled 14.1 11
PDB header:signaling protein
Chain: B: PDB Molecule:phob family transcriptional regulator;
PDBTitle: structure of a lantibiotic response regulator: n terminal domain of2 the nisin resistance regulator nsrr
56c3sboA_



not modelled 14.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp-specific glutamate dehydrogenase;
PDBTitle: structure of e.coli gdh from native source
57c4dadA_



not modelled 13.5 33
PDB header:signaling protein, signal transduction
Chain: A: PDB Molecule:putative pilus assembly-related protein;
PDBTitle: crystal structure of a putative pilus assembly-related protein2 (bpss2195) from burkholderia pseudomallei k96243 at 2.50 a resolution3 (psi community target, shapiro l.)
58d2r25b1



not modelled 13.4 20
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
59c3hv2B_



not modelled 13.4 30
PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-containing2 protein from pseudomonas fluorescens pf-5
60c5n5eM_



not modelled 13.3 12
PDB header:oxidoreductase
Chain: M: PDB Molecule:pfc_05175;
PDBTitle: crystal structure of encapsulated ferritin domain from pyrococcus2 furiosus pfc_05175
61c2qv0A_



not modelled 13.2 15
PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of protein mrke2 from klebsiella pneumoniae
62c4xgiA_



not modelled 13.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase from burkholderia2 thailandensis
63c3aogA_



not modelled 13.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form)
64d1ej7s_



not modelled 13.1 24
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
65d1uzdc1



not modelled 13.0 43
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
66c2fhoA_



not modelled 12.8 32
PDB header:rna binding protein
Chain: A: PDB Molecule:spliceosomal protein sf3b155;
PDBTitle: nmr solution structure of the human spliceosomal protein2 complex p14-sf3b155
67d8ruci_



not modelled 12.7 45
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
68c5hdjA_



not modelled 12.7 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:nfra1;
PDBTitle: structure of b. megaterium nfra1
69c3aoeC_



not modelled 12.7 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form)
70c2qxyB_



not modelled 12.6 20
PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
71c2f9jP_



not modelled 12.4 30
PDB header:rna binding protein
Chain: P: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
72c5lwkB_



not modelled 12.3 20
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein;
PDBTitle: maer response regulator bound to beryllium trifluoride
73d1zesa1



not modelled 12.2 20
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
74c6cg8A_



not modelled 12.1 22
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:upf0335 protein b7z12_12435;
PDBTitle: structure of c. crescentus gapr-dna
75c3u8pB_



not modelled 12.1 11
PDB header:fluorescent protein, electron transport
Chain: B: PDB Molecule:cytochrome b562 integral fusion with enhanced green
PDBTitle: cytochrome b562 integral fusion with egfp
76c3n2sD_



not modelled 11.9 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadph-dependent nitro/flavin reductase;
PDBTitle: structure of nfra1 nitroreductase from b. subtilis
77c5tpjA_



not modelled 11.6 11
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
78d1zcha1



not modelled 11.4 19
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
79c2nt3A_



not modelled 11.4 21
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator homolog;
PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant)
80c4myrD_



not modelled 11.4 22
PDB header:transcription
Chain: D: PDB Molecule:cpae2 pilus assembly protein;
PDBTitle: crystal structure of a putative cpae2 pilus assembly protein (cpae2)2 from sinorhizobium meliloti 1021 at 2.72 a resolution (psi community3 target, shapiro)
81c2rjnA_



not modelled 11.3 15
PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
82d1f5va_



not modelled 11.1 19
Fold:FMN-dependent nitroreductase-like
Superfamily:FMN-dependent nitroreductase-like
Family:NADH oxidase/flavin reductase
83c3k8zD_



not modelled 11.0 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis
84c4qicC_



not modelled 10.9 11
PDB header:signaling protein/dna binding protein
Chain: C: PDB Molecule:sensory transduction regulatory protein, anti-anti-sigma
PDBTitle: co-crystal structure of anti-anti-sigma factor phyr complexed with2 anti-sigma factor nepr from bartonella quintana
85c3crnA_



not modelled 10.8 19
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
86d1krwa_



not modelled 10.7 35
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
87c3lteH_



not modelled 10.5 26
PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
88c5heiE_



not modelled 10.5 19
PDB header:oxidoreductase
Chain: E: PDB Molecule:nfra2;
PDBTitle: structure of b. megaterium nfra2
89c1bvuF_



not modelled 10.5 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (glutamate dehydrogenase);
PDBTitle: glutamate dehydrogenase from thermococcus litoralis
90c4h60A_



not modelled 10.4 16
PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey;
PDBTitle: high resolution structure of vibrio cholerae chemotaxis protein chey42 crystallized in low ph (4.0) condition
91c3of4A_



not modelled 10.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitroreductase;
PDBTitle: crystal structure of a fmn/fad- and nad(p)h-dependent nitroreductase2 (nfnb, il2077) from idiomarina loihiensis l2tr at 1.90 a resolution
92c5ocsB_



not modelled 10.4 19
PDB header:flavoprotein
Chain: B: PDB Molecule:putative nadh-depentdent flavin oxidoreductase;
PDBTitle: ene-reductase (er/oye) from ralstonia (cupriavidus) metallidurans
93c3gkaB_



not modelled 10.3 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:n-ethylmaleimide reductase;
PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei
94c4b5nA_



not modelled 10.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, fmn-binding;
PDBTitle: crystal structure of oxidized shewanella yellow enzyme 4 (sye4)
95c3n0rA_



not modelled 10.0 9
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
96c3to5A_



not modelled 9.9 26
PDB header:signaling protein
Chain: A: PDB Molecule:chey homolog;
PDBTitle: high resolution structure of chey3 from vibrio cholerae
97c4g97A_



not modelled 9.7 10
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of the response regulator phyr from brucella abortus
98c1hrdA_



not modelled 9.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: glutamate dehydrogenase
99c6fkib_



not modelled 9.5 9
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit beta, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3

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