Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3690_(-)_4131917_4132570
DateFri Aug 9 18:20:38 BST 2019
Unique Job IDce37844df49a1a60
SequenceVPSIDIDREA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.797 Y:34.694 Z:36.297
Model (left) based on template c1wolA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:122aa long conserved hypothetical protein;
PDBTitle: crystal structure of st0689, an archaeal hepn homologue
Confidence and coverage
Confidence: 87.7% Coverage: 44%
95 residues ( 44% of your sequence) have been modelled with 87.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1wolA_
87.7 11
PDB header:unknown function
Chain: A: PDB Molecule:122aa long conserved hypothetical protein;
PDBTitle: crystal structure of st0689, an archaeal hepn homologue
2c2hsbA_
77.4 11
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical upf0332 protein af0298;
PDBTitle: crystal structure of a hepn domain containing protein (af_0298) from2 archaeoglobus fulgidus at 1.95 a resolution
3d1ufba_
71.8 19
Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:HEPN domain
4d2b7oa1
55.6 17
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
5c2kncA_
35.7 10
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
6c5v2sA_
32.8 14
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
7c1r7gA_
30.5 26
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc)
8c1r7cA_
30.5 26
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 50% tfe)
9c5n9yB_
29.0 9
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
10c1v8cA_
28.5 31
PDB header:protein binding
Chain: A: PDB Molecule:moad related protein;
PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8
11c3j0cG_
22.6 24
PDB header:virus
Chain: G: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
12c2ks1A_
21.6 15
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
13c2jwaA_
21.6 15
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
14c5kwpA_
21.0 33
PDB header:de novo protein
Chain: A: PDB Molecule:designed peptide nc_eeh_d2;
PDBTitle: nmr solution structure of designed peptide nc_eeh_d2
15c2k1aA_
20.4 11
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
16c5a5tC_
20.4 15
PDB header:hydrolase
Chain: C: PDB Molecule:eukaryotic translation initiation factor 3 subunit c;
PDBTitle: structure of mammalian eif3 in the context of the 43s preinitiation2 complex
17c4u1cC_
19.6 17
PDB header:translation
Chain: C: PDB Molecule:eukaryotic translation initiation factor 3 subunit c;
PDBTitle: crystal structure of the eif3a/eif3c pci-domain heterodimer
18c4ev6E_
17.1 9
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
19c3j7jC_
17.0 15
PDB header:translation
Chain: C: PDB Molecule:eukaryotic translation initiation factor 3 subunit c;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
20c3j8bC_
17.0 15
PDB header:translation
Chain: C: PDB Molecule:eukaryotic translation initiation factor 3 subunit c;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
21c3j8cC_
not modelled 17.0 15
PDB header:translation
Chain: C: PDB Molecule:eukaryotic translation initiation factor 3 subunit c;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
22c3j7kC_
not modelled 17.0 15
PDB header:translation
Chain: C: PDB Molecule:eukaryotic translation initiation factor 3 subunit c;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
23c2l8sA_
not modelled 15.9 8
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
24c3dpiA_
not modelled 13.3 13
PDB header:ligase
Chain: A: PDB Molecule:nad+ synthetase;
PDBTitle: crystal structure of nad+ synthetase from burkholderia pseudomallei
25c3o10D_
not modelled 13.1 13
PDB header:chaperone
Chain: D: PDB Molecule:sacsin;
PDBTitle: crystal structure of the hepn domain from human sacsin
26d1wpga4
not modelled 12.2 13
Fold:Calcium ATPase, transmembrane domain M
Superfamily:Calcium ATPase, transmembrane domain M
Family:Calcium ATPase, transmembrane domain M
27c2fzvC_
not modelled 11.9 16
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri
28c3mk7F_
not modelled 11.7 23
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
29c2n2aA_
not modelled 10.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
30c6mctH_
not modelled 10.0 5
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
31c6mctO_
not modelled 10.0 5
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
32c6mctC_
not modelled 10.0 5
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
33c6mctJ_
not modelled 10.0 5
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
34c6mctI_
not modelled 10.0 5
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
35c6mctE_
not modelled 10.0 5
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
36c6mctD_
not modelled 10.0 5
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
37c6mctG_
not modelled 10.0 5
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
38c6mctM_
not modelled 10.0 5
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
39c6mctB_
not modelled 10.0 5
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
40c6mctN_
not modelled 10.0 5
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
41c6mctA_
not modelled 10.0 5
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
42c6mctL_
not modelled 10.0 5
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
43c6mctF_
not modelled 10.0 5
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
44c6mq2D_
not modelled 10.0 5
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
45c6mpwA_
not modelled 10.0 5
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
46c6mctK_
not modelled 10.0 5
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
47c2v1sD_
not modelled 9.9 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:mitochondrial import receptor subunit tom20 homolog;
PDBTitle: crystal structure of rat tom20-aldh presequence complex
48d1om2a_
not modelled 9.8 24
Fold:Open three-helical up-and-down bundle
Superfamily:Mitochondrial import receptor subunit Tom20
Family:Mitochondrial import receptor subunit Tom20
49c6mq2E_
not modelled 9.6 5
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
50c6mpwE_
not modelled 9.6 5
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
51c6mq2A_
not modelled 9.6 5
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
52c6mpwB_
not modelled 9.6 5
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
53c6mq2C_
not modelled 9.6 5
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
54c6mpwC_
not modelled 9.6 5
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
55c6mq2B_
not modelled 9.6 5
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
56c6mpwD_
not modelled 9.6 5
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
57d1o3ua_
not modelled 9.2 11
Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:HEPN domain
58c5t42A_
not modelled 9.2 12
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the ebola virus envelope protein mper/tm domain and its2 interaction with the fusion loop explains their fusion activity
59c2axtH_
not modelled 9.0 15
PDB header:electron transport
Chain: H: PDB Molecule:photosystem ii reaction center h protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
60d2axth1
not modelled 9.0 15
Fold:Single transmembrane helix
Superfamily:Photosystem II 10 kDa phosphoprotein PsbH
Family:PsbH-like
61c3urzB_
not modelled 8.4 10
PDB header:protein binding
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative protein binding protein (bacova_03105)2 from bacteroides ovatus atcc 8483 at 2.19 a resolution
62c5fshA_
not modelled 8.4 23
PDB header:hydrolase
Chain: A: PDB Molecule:csm6;
PDBTitle: crystal structure of thermus thermophilus csm6
63c4nqfB_
not modelled 8.4 18
PDB header:transferase
Chain: B: PDB Molecule:nucleotidyltransferase;
PDBTitle: crystal structure of hepn domain protein
64c6nk6B_
not modelled 7.9 20
PDB header:virus like particle/signaling protein
Chain: B: PDB Molecule:e1 glycoprotein;
PDBTitle: electron cryo-microscopy of chikungunya vlp in complex with mouse2 mxra8 receptor
65c3q4gA_
not modelled 7.6 14
PDB header:ligase
Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nad synthetase from vibrio cholerae
66c1zzaA_
not modelled 7.5 14
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
67c3u7rB_
not modelled 7.4 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent fmn reductase;
PDBTitle: ferb - flavoenzyme nad(p)h:(acceptor) oxidoreductase (ferb) from2 paracoccus denitrificans
68c4rvqA_
not modelled 7.2 21
PDB header:protein binding
Chain: A: PDB Molecule:pre-mrna splicing helicase-like protein;
PDBTitle: pwi-like domain of chaetomium thermophilum brr2
69d2f23a1
not modelled 7.0 15
Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
70c2xzeA_
not modelled 6.7 21
PDB header:hydrolase/protein transport
Chain: A: PDB Molecule:stam-binding protein;
PDBTitle: structural basis for amsh-escrt-iii chmp3 interaction
71c3hy5A_
not modelled 6.6 16
PDB header:transport protein
Chain: A: PDB Molecule:retinaldehyde-binding protein 1;
PDBTitle: crystal structure of cralbp
72c4eu4A_
not modelled 6.6 15
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:acetate coenzyme a transferase;
PDBTitle: succinyl-coa: acetate coa-transferase (aarch6) in complex with coa2 (hexagonal lattice)
73c4jhjD_
not modelled 6.5 71
PDB header:translation
Chain: D: PDB Molecule:dead/h (asp-glu-ala-asp/his) box polypeptide 19 (dbp5
PDBTitle: crystal structure of danio rerio slip1 in complex with dbp5
74c4jhjC_
not modelled 6.5 71
PDB header:translation
Chain: C: PDB Molecule:dead/h (asp-glu-ala-asp/his) box polypeptide 19 (dbp5
PDBTitle: crystal structure of danio rerio slip1 in complex with dbp5
75c2nvvF_
not modelled 6.5 23
PDB header:hydrolase
Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein;
PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16.
76c2vyiA_
not modelled 6.4 15
PDB header:chaperone
Chain: A: PDB Molecule:sgta protein;
PDBTitle: crystal structure of the tpr domain of human sgt
77c1p58F_
not modelled 6.3 13
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
78c1p58E_
not modelled 6.3 13
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
79d1rkta2
not modelled 6.2 18
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
80c3q49B_
not modelled 6.2 10
PDB header:ligase/chaperone
Chain: B: PDB Molecule:stip1 homology and u box-containing protein 1;
PDBTitle: crystal structure of the tpr domain of chip complexed with hsp70-c2 peptide
81c6mx4J_
not modelled 6.0 25
PDB header:virus
Chain: J: PDB Molecule:e1;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus
82c2l05A_
not modelled 5.9 15
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase b-raf;
PDBTitle: solution nmr structure of the ras-binding domain of serine/threonine-2 protein kinase b-raf from homo sapiens, northeast structural genomics3 consortium target hr4694f
83d1ecma_
not modelled 5.8 28
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
84c6agfB_
not modelled 5.8 2
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
85c5hujB_
not modelled 5.8 13
PDB header:transferase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: crystal structure of nade from streptococcus pyogenes
86c5yxiA_
not modelled 5.3 25
PDB header:de novo protein
Chain: A: PDB Molecule:drafx6;
PDBTitle: designed protein drafx6
87c2q00B_
not modelled 5.3 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:orf c02003 protein;
PDBTitle: crystal structure of the p95883_sulso protein from sulfolobus2 solfataricus. nesg target ssr10.
88d1xrsa_
not modelled 5.2 17
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:D-lysine 5,6-aminomutase alpha subunit, KamD

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below