Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3691_(-)_4132696_4133697
DateFri Aug 9 18:20:38 BST 2019
Unique Job ID06a8ffe4d9f78982
SequenceMAPASTSSTG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.139 Y:41.573 Z:40.626
Model (left) based on template c5fmrC_
Top template information
PDB header:transport protein
Chain: C: PDB Molecule:intraflagellar transport protein component ift52;
PDBTitle: crift52 n-terminal domain
Confidence and coverage
Confidence: 98.8% Coverage: 50%
165 residues ( 50% of your sequence) have been modelled with 98.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5fmrC_



98.8 13
PDB header:transport protein
Chain: C: PDB Molecule:intraflagellar transport protein component ift52;
PDBTitle: crift52 n-terminal domain
2c5fmsA_



98.6 13
PDB header:transport protein
Chain: A: PDB Molecule:intraflagellar transport protein 52 homolog;
PDBTitle: mmift52 n-terminal domain
3c5gslB_



96.1 15
PDB header:hydrolase
Chain: B: PDB Molecule:778aa long hypothetical beta-galactosidase;
PDBTitle: glycoside hydrolase a
4c6eznG_



95.2 13
PDB header:membrane protein
Chain: G: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
5c5xb7E_



95.0 19
PDB header:hydrolase
Chain: E: PDB Molecule:beta-galactosidase;
PDBTitle: gh42 alpha-l-arabinopyranosidase from bifidobacterium animalis subsp.2 lactis bl-04
6d1kwga3



94.9 16
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:A4 beta-galactosidase middle domain
7d2gk3a1



94.4 13
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
8c1kwgA_



93.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase
9c5gsmB_



92.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: glycoside hydrolase b with product
10c4uzsB_



91.0 14
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of bifidobacterium bifidum beta-galactosidase
11c4ojyA_



89.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: 3d structure of the e323a catalytic mutant of gan42b, a gh42 beta-2 galactosidase from g. stearothermophilus
12c4uozC_



84.0 11
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: beta-(1,6)-galactosidase from bifidobacterium animalis subsp. lactis2 bl-04 nucleophile mutant e324a in complex with galactose
13c5vymB_



83.5 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase bgab;
PDBTitle: crystal structure of beta-galactosidase from bifidobacterium2 adolescentis
14c3sozC_



83.5 11
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:cytoplasmic protein stm1381;
PDBTitle: cytoplasmic protein stm1381 from salmonella typhimurium lt2
15d1x7da_



69.7 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Ornithine cyclodeaminase-like
16c4e5vA_



66.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thua-like protein;
PDBTitle: crystal structure of a putative thua-like protein (parmer_02418) from2 parabacteroides merdae atcc 43184 at 1.75 a resolution
17c2iv1J_



66.1 20
PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the catalytic2 mechanism of cyanase
18c5e9aB_



64.2 12
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure analysis of the cold-adamped beta-galactosidase from2 rahnella sp. r3
19d1dwka1



58.2 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
20c3ttsD_



46.6 11
PDB header:hydrolase
Chain: D: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacillus circulans sp.2 alkalophilus
21d1j6ua1



not modelled 45.0 19
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
22d1p3da1



not modelled 41.7 24
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
23c3mkzU_



not modelled 38.7 10
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
24c3mkyP_



not modelled 36.9 10
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
25c5uk3J_



not modelled 35.7 14
PDB header:lyase
Chain: J: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of cyanase from t. urticae
26c1y9qA_



not modelled 33.9 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
27c3rhtB_



not modelled 33.2 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
28c3smaD_



not modelled 32.3 20
PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf
29c6bc3A_



not modelled 31.0 20
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aac 3-vi protein;
PDBTitle: cryo x-ray structure of sisomicin bound aac-via
30c6b9tH_



not modelled 30.8 21
PDB header:oxidoreductase
Chain: H: PDB Molecule:methylphosphonate synthase;
PDBTitle: crystal structure of mpns with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
31c6mn5A_



not modelled 30.6 18
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aminoglycoside n(3)-acetyltransferase, aac(3)-iva;
PDBTitle: crystal structure of aminoglycoside acetyltransferase aac(3)-iva,2 h154a mutant, in complex with gentamicin c1a
32d2nyga1



not modelled 29.5 15
Fold:TTHA0583/YokD-like
Superfamily:TTHA0583/YokD-like
Family:Aminoglycoside 3-N-acetyltransferase-like
33c6b9rD_



not modelled 29.4 39
PDB header:oxidoreductase
Chain: D: PDB Molecule:hydroxyethylphosphonate dioxygenase;
PDBTitle: streptomyces albus hepd with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
34d1t0ba_



not modelled 29.0 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:ThuA-like
35c4jqsC_



not modelled 26.9 6
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative thua-like protein (bacuni_01602) from2 bacteroides uniformis atcc 8492 at 2.30 a resolution
36c3e4fB_



not modelled 25.9 15
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase;
PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis
37d1gr0a2



not modelled 25.3 25
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
38c6mb6A_



not modelled 25.2 18
PDB header:transferase
Chain: A: PDB Molecule:aac(3)-iiib protein;
PDBTitle: aac-iiib binary with coash
39c4mcxE_



not modelled 23.7 24
PDB header:toxin
Chain: E: PDB Molecule:antidote protein;
PDBTitle: p. vulgaris higba structure, crystal form 2
40c1yi1A_



not modelled 23.3 33
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase;
PDBTitle: crystal structure of arabidopsis thaliana acetohydroxyacid synthase in2 complex with a sulfonylurea herbicide, tribenuron methyl
41c5gziB_



not modelled 23.3 22
PDB header:lyase
Chain: B: PDB Molecule:lysine cyclodeaminase;
PDBTitle: cyclodeaminase_pa
42c4mp6A_



not modelled 22.8 3
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative ornithine cyclodeaminase;
PDBTitle: staphyloferrin b precursor biosynthetic enzyme sbnb bound to citrate2 and nad+
43c3cecA_



not modelled 22.5 16
PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
44c3trbA_



not modelled 22.3 22
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
45c2bnoA_



not modelled 21.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase from s.2 wedmorenis.
46c6f8sA_



not modelled 21.3 19
PDB header:toxin
Chain: A: PDB Molecule:xre family transcriptional regulator;
PDBTitle: toxin-antitoxin complex grata
47c8jdwA_



not modelled 19.6 27
PDB header:transferase
Chain: A: PDB Molecule:protein (l-arginine:glycine amidinotransferase);
PDBTitle: crystal structure of human l-arginine:glycine amidinotransferase in2 complex with l-alanine
48c1zzgB_



not modelled 19.4 21
PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8
49d1ybha2



not modelled 19.2 35
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
50d2icta1



not modelled 18.8 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
51c1jdwA_



not modelled 18.5 27
PDB header:transferase
Chain: A: PDB Molecule:l-arginine\:glycine amidinotransferase;
PDBTitle: crystal structure and mechanism of l-arginine: glycine2 amidinotransferase: a mitochondrial enzyme involved in3 creatine biosynthesis
52d1jdwa_



not modelled 18.5 27
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Amidinotransferase
53c5ht0B_



not modelled 17.3 20
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside acetyltransferase hmb0005;
PDBTitle: crystal structure of an antibiotic_nat family aminoglycoside2 acetyltransferase hmb0038 from an uncultured soil metagenomic sample3 in complex with coenzyme a
54c2an1D_



not modelled 16.7 24
PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
55c1eysH_



not modelled 16.4 25
PDB header:electron transport
Chain: H: PDB Molecule:photosynthetic reaction center;
PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum
56c5wpiB_



not modelled 16.0 21
PDB header:transferase
Chain: B: PDB Molecule:hsva;
PDBTitle: the virulence-associated protein hsva from the fire blight pathogen2 erwinia amylovora is a polyamine amidinotransferase
57c5d50I_



not modelled 15.4 19
PDB header:dna binding protein
Chain: I: PDB Molecule:repressor;
PDBTitle: crystal structure of rep-ant complex from salmonella-temperate phage
58c1w8xP_



not modelled 14.7 14
PDB header:virus
Chain: P: PDB Molecule:protein p16;
PDBTitle: structural analysis of prd1
59c2dg2D_



not modelled 14.6 20
PDB header:protein binding
Chain: D: PDB Molecule:apolipoprotein a-i binding protein;
PDBTitle: crystal structure of mouse apolipoprotein a-i binding protein
60c3mczB_



not modelled 14.3 10
PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: the structure of an o-methyltransferase family protein from2 burkholderia thailandensis.
61c3hdjA_



not modelled 13.5 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable ornithine cyclodeaminase;
PDBTitle: the crystal structure of probable ornithine cyclodeaminase from2 bordetella pertussis tohama i
62d1t6t1_



not modelled 13.1 15
Fold:Toprim domain
Superfamily:Toprim domain
Family:Toprim domain
63c5emiA_



not modelled 12.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:cell wall hydrolase/autolysin;
PDBTitle: n-acetylmuramoyl-l-alanine amidase amic2 of nostoc punctiforme
64c2n1pA_



not modelled 12.7 20
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
65c6ohiA_



not modelled 12.4 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
66d2ihta2



not modelled 12.4 47
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
67c2lonA_



not modelled 12.4 17
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
68c3kgkA_



not modelled 12.2 18
PDB header:chaperone
Chain: A: PDB Molecule:arsenical resistance operon trans-acting repressor arsd;
PDBTitle: crystal structure of arsd
69c2i99A_



not modelled 12.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:mu-crystallin homolog;
PDBTitle: crystal structure of human mu_crystallin at 2.6 angstrom
70d1u1ia2



not modelled 11.8 30
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
71c3eagA_



not modelled 11.1 29
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides
72d2ji7a2



not modelled 10.7 25
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
73c6cauA_



not modelled 10.6 17
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii2 ab5075-uw with amppnp
74c2ebyA_



not modelled 10.5 16
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
75c4zp3O_



not modelled 10.5 33
PDB header:signaling protein
Chain: O: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
76c4zp3R_



not modelled 10.5 33
PDB header:signaling protein
Chain: R: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
77c4zp3Q_



not modelled 10.5 33
PDB header:signaling protein
Chain: Q: PDB Molecule:a-kinase anchor protein 7 isoforms alpha and beta;
PDBTitle: akap18:pka-riialpha structure reveals crucial anchor points for2 recognition of regulatory subunits of pka
78c1upaC_



not modelled 10.2 44
PDB header:synthase
Chain: C: PDB Molecule:carboxyethylarginine synthase;
PDBTitle: carboxyethylarginine synthase from streptomyces2 clavuligerus (semet structure)
79c4v0bA_



not modelled 10.1 25
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: escherichia coli ftsh hexameric n-domain
80d1vjpa2



not modelled 10.1 10
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
81d1p1ja2



not modelled 9.6 30
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
82c2l9uA_



not modelled 9.1 21
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
83c2l9uB_



not modelled 9.1 21
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
84c2f00A_



not modelled 9.0 19
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
85c4binA_



not modelled 9.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase amic;
PDBTitle: crystal structure of the e. coli n-acetylmuramoyl-l-alanine amidase2 amic
86c3eusB_



not modelled 8.6 17
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
87c1ta9A_



not modelled 8.3 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol dehydrogenase;
PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe
88c2lowA_



not modelled 8.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
89d1rioa_



not modelled 8.0 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
90c5zc2B_



not modelled 8.0 10
PDB header:flavoprotein
Chain: B: PDB Molecule:p-hydroxyphenylacetate 3-hydroxylase, reductase component;
PDBTitle: acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (hpah),2 reductase component (c1)
91d1vkoa2



not modelled 7.8 20
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
92c3ktbD_



not modelled 7.6 18
PDB header:transcription regulator
Chain: D: PDB Molecule:arsenical resistance operon trans-acting repressor;
PDBTitle: crystal structure of arsenical resistance operon trans-acting2 repressor from bacteroides vulgatus atcc 8482
93c2xgjA_



not modelled 7.6 14
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
94d2jgra1



not modelled 7.5 20
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
95d1ozha2



not modelled 7.3 24
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
96d1adra_



not modelled 7.2 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
97c6iegA_



not modelled 6.9 21
PDB header:rna binding protein
Chain: A: PDB Molecule:exosome rna helicase mtr4;
PDBTitle: crystal structure of human mtr4
98d2ff4a2



not modelled 6.8 19
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:BTAD-like
99c2lcoA_



not modelled 6.7 24
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p8 peptide;
PDBTitle: 1h and 15n assignments of walp19-p8 peptide in sds micelles

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Transmembrane helix prediction 

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