Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3694c_(-)_4136300_4137292
DateFri Aug 9 18:20:38 BST 2019
Unique Job ID3de674ae3e0f10cb
SequenceVDVDAFLLTN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.169 Y:27.106 Z:62.603
Model (left) based on template c6hwhX_
Top template information
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
Confidence and coverage
Confidence: 92.2% Coverage: 22%
74 residues ( 22% of your sequence) have been modelled with 92.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6hwhX_



92.2 14
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
2c2lo0B_



58.6 19
PDB header:protein binding
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the get5 carboxyl domain from a. fumigatus
3c2momB_



58.2 26
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
4c2momC_



58.2 26
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
5d1g7oa1



56.8 17
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
6c5lc5c_



55.5 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class2
7c3jcuI_



49.6 24
PDB header:membrane protein
Chain: I: PDB Molecule:protein photosystem ii reaction center protein i;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
8c5ldwc_



47.6 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class1
9c5yo8B_



45.4 17
PDB header:lyase
Chain: B: PDB Molecule:tetraprenyl-beta-curcumene synthase;
PDBTitle: crystal structure of beta-c25/c30/c35-prene synthase
10d1alla_



41.6 10
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
11c3a0hi_



39.5 21
PDB header:electron transport
Chain: I: PDB Molecule:photosystem ii reaction center protein i;
PDBTitle: crystal structure of i-substituted photosystem ii complex
12c4po5E_



38.0 8
PDB header:photosynthesis
Chain: E: PDB Molecule:allophycocyanin subunit alpha-b;
PDBTitle: crystal structure of allophycocyanin b from synechocystis pcc 6803
13c2vmlA_



37.8 18
PDB header:photosynthesis
Chain: A: PDB Molecule:phycocyanin alpha chain;
PDBTitle: the monoclinic structure of phycocyanin from gloeobacter violaceus
14d2axti1



35.8 21
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
15d1ha7b_



34.4 16
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
16c2c7jB_



33.1 20
PDB header:electron transport
Chain: B: PDB Molecule:phycoerythrocyanin beta chain;
PDBTitle: phycoerythrocyanin from mastigocladus laminosus, 295 k, 3.0 a
17d1cpcb_



32.9 20
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
18d1cpca_



29.7 21
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
19c6ajjA_



29.5 16
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
20c2jo8B_



28.6 32
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase 4;
PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1)
21c4l0nG_



not modelled 27.5 32
PDB header:transferase
Chain: G: PDB Molecule:serine/threonine-protein kinase 3;
PDBTitle: crystal structure of stk3 (mst2) sarah domain
22d1f99b_



not modelled 27.5 16
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
23c5azdA_



not modelled 27.2 18
PDB header:transport protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of thermophilic rhodopsin.
24d1xg0c_



not modelled 26.4 16
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
25c2dcoA_



not modelled 25.2 21
PDB header:membrane protein
Chain: A: PDB Molecule:s1p4 first extracellular loop peptidomimetic;
PDBTitle: s1p4 first extracellular loop peptidomimetic
26d1jboa_



not modelled 23.9 18
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
27c6nyyC_



not modelled 22.8 19
PDB header:translocase
Chain: C: PDB Molecule:afg3-like protein 2;
PDBTitle: human m-aaa protease afg3l2, substrate-bound
28d2ofya1



not modelled 21.2 12
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
29d1eyxb_



not modelled 21.0 15
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
30c3i3aC_



not modelled 19.8 15
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa
31c4aj5M_



not modelled 19.1 26
PDB header:cell cycle
Chain: M: PDB Molecule:spindle and kinetochore-associated protein 2;
PDBTitle: crystal structure of the ska core complex
32c5ip1A_



not modelled 18.5 17
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: tomato spotted wilt tospovirus nucleocapsid protein
33c4jo8B_



not modelled 18.5 13
PDB header:immune system/viral protein
Chain: B: PDB Molecule:killer cell lectin-like receptor 8;
PDBTitle: crystal structure of the activating ly49h receptor in complex with2 m157 (g1f strain)
34c2mc0A_



not modelled 18.3 16
PDB header:transcription activator/antibiotic
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: structural basis of a thiopeptide antibiotic multidrug resistance2 system from streptomyces lividans:nosiheptide in complex with tipas
35d1liaa_



not modelled 17.9 11
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
36c3sboA_



not modelled 17.6 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp-specific glutamate dehydrogenase;
PDBTitle: structure of e.coli gdh from native source
37d1eyxa_



not modelled 17.2 14
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
38c3r3eA_



not modelled 16.8 19
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein yqjg;
PDBTitle: the glutathione bound structure of yqjg, a glutathione transferase2 homolog from escherichia coli k-12
39d1kn1a_



not modelled 16.6 10
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
40c3pxpA_



not modelled 16.1 16
PDB header:transcription regulator
Chain: A: PDB Molecule:helix-turn-helix domain protein;
PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution
41c5d3aA_



not modelled 16.0 14
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein kif21a;
PDBTitle: kif21a regulatory coiled coil
42c3a7kD_



not modelled 15.6 21
PDB header:membrane protein
Chain: D: PDB Molecule:halorhodopsin;
PDBTitle: crystal structure of halorhodopsin from natronomonas2 pharaonis
43c4xxkA_



not modelled 15.5 23
PDB header:transferase
Chain: A: PDB Molecule:phycobiliprotein apce;
PDBTitle: crystal structure of the semet-derivative of the bilin-binding domain2 of phycobilisome core-membrane linker apce
44d1liab_



not modelled 15.3 13
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
45c4kppA_



not modelled 15.1 16
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
46c4ptsB_



not modelled 15.0 13
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase;
PDBTitle: crystal structure of a glutathione transferase from gordonia2 bronchialis dsm 43247, target efi-507405
47c6hhnA_



not modelled 13.9 21
PDB header:isomerase
Chain: A: PDB Molecule:l-rhamnose mutarotase;
PDBTitle: crystal structure of l-rhamnose mutarotase fa22100 from formosa2 agariphila
48c3okqA_



not modelled 13.8 25
PDB header:protein binding
Chain: A: PDB Molecule:bud site selection protein 6;
PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6
49c3zplE_



not modelled 13.7 18
PDB header:transcription/dna
Chain: E: PDB Molecule:putative marr-family transcriptional repressor;
PDBTitle: crystal structure of sco3205, a marr family transcriptional regulator2 from streptomyces coelicolor, in complex with dna
50c3jz0B_



not modelled 13.7 11
PDB header:transferase/antibiotic
Chain: B: PDB Molecule:lincosamide nucleotidyltransferase;
PDBTitle: linb complexed with clindamycin and ampcpp
51d1b33a_



not modelled 13.6 11
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
52c2lvsA_



not modelled 13.2 19
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr solution structure of a crispr repeat binding protein
53c2qlxA_



not modelled 12.7 13
PDB header:isomerase
Chain: A: PDB Molecule:l-rhamnose mutarotase;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose
54c2qlwA_



not modelled 12.7 13
PDB header:isomerase
Chain: A: PDB Molecule:rhau;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum
55c4bwcA_



not modelled 12.4 44
PDB header:hydrolase
Chain: A: PDB Molecule:phospholipase b-like 1;
PDBTitle: x-ray structure of a phospholiapse b like protein 1 from2 bovine kidneys
56c3fgrA_



not modelled 12.3 56
PDB header:hydrolase
Chain: A: PDB Molecule:putative phospholipase b-like 2 28 kda form;
PDBTitle: two chain form of the 66.3 kda protein at 1.8 angstroem
57c5tw9D_



not modelled 12.2 20
PDB header:lipid-binding protein
Chain: D: PDB Molecule:iron uptake system component efeo;
PDBTitle: 1.50 angstrom crystal structure of c-terminal fragment (residues 322-2 384) of iron uptake system component efeo from yersinia pestis.
58c2vmlD_



not modelled 12.0 16
PDB header:photosynthesis
Chain: D: PDB Molecule:phycocyanin beta chain;
PDBTitle: the monoclinic structure of phycocyanin from gloeobacter violaceus
59d1x8da1



not modelled 11.7 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:YiiL-like
60c5lj3H_



not modelled 11.5 13
PDB header:splicing
Chain: H: PDB Molecule:cwc22;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
61c3bpjD_



not modelled 11.3 19
PDB header:translation
Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j;
PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha
62c5tmxA_



not modelled 11.1 27
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
63c6bn1A_



not modelled 11.1 24
PDB header:signaling protein
Chain: A: PDB Molecule:serine/threonine-protein kinase hippo;
PDBTitle: salvador hippo sarah domain complex
64c3hxrA_



not modelled 10.9 5
PDB header:structural protein
Chain: A: PDB Molecule:nucleoporin nup120;
PDBTitle: nucleoporin nup120 from s.cerevisiae (aa 1-757)
65c2kxaA_



not modelled 10.7 50
PDB header:viral protein, immune system
Chain: A: PDB Molecule:haemagglutinin ha2 chain peptide;
PDBTitle: the hemagglutinin fusion peptide (h1 subtype) at ph 7.4
66d1aw9a1



not modelled 10.7 17
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
67c5mqfT_



not modelled 10.6 18
PDB header:splicing
Chain: T: PDB Molecule:pre-mrna-splicing factor cwc22 homolog;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
68c1vw4R_



not modelled 10.3 17
PDB header:ribosome
Chain: R: PDB Molecule:54s ribosomal protein l2, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
69c3io1B_



not modelled 10.3 7
PDB header:hydrolase
Chain: B: PDB Molecule:aminobenzoyl-glutamate utilization protein;
PDBTitle: crystal structure of aminobenzoyl-glutamate utilization2 protein from klebsiella pneumoniae
70d1ug2a_



not modelled 10.1 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
71c1nogA_



not modelled 10.0 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein ta0546;
PDBTitle: crystal structure of conserved protein 0546 from thermoplasma2 acidophilum
72d1noga_



not modelled 10.0 28
Fold:Ferritin-like
Superfamily:Cobalamin adenosyltransferase-like
Family:Cobalamin adenosyltransferase
73c2jagA_



not modelled 9.9 21
PDB header:membrane protein
Chain: A: PDB Molecule:halorhodopsin;
PDBTitle: l1-intermediate of halorhodopsin t203v
74c3j1zP_



not modelled 9.7 14
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
75d1e12a_



not modelled 9.7 20
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
76c2jxfA_



not modelled 9.6 23
PDB header:viral protein, membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: the solution structure of hcv ns4b(40-69)
77c4wqoD_



not modelled 9.6 10
PDB header:transcription
Chain: D: PDB Molecule:cullin-2;
PDBTitle: structure of vhl-elob-eloc-cul2
78d1ha7a_



not modelled 9.4 17
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
79c4fquF_



not modelled 9.4 18
PDB header:oxidoreductase
Chain: F: PDB Molecule:putative glutathione transferase;
PDBTitle: glutathionyl-hydroquinone reductase pcpf of sphingobium2 chlorophenolicum
80c6et5O_



not modelled 9.1 29
PDB header:photosynthesis
Chain: O: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
81c6et5s_



not modelled 9.1 29
PDB header:photosynthesis
Chain: S: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
82c6et5v_



not modelled 9.1 29
PDB header:photosynthesis
Chain: V: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
83c6et5a_



not modelled 9.1 29
PDB header:photosynthesis
Chain: A: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
84c6et5I_



not modelled 9.1 29
PDB header:photosynthesis
Chain: I: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
85c6et55_



not modelled 9.1 29
PDB header:photosynthesis
Chain: 5: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
86c6et5m_



not modelled 9.1 29
PDB header:photosynthesis
Chain: M: PDB Molecule:reaction center protein m chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
87c6et5X_



not modelled 9.1 29
PDB header:photosynthesis
Chain: X: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
88c6et5j_



not modelled 9.1 29
PDB header:photosynthesis
Chain: J: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
89c6et5y_



not modelled 9.1 29
PDB header:photosynthesis
Chain: Y: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
90c6et5g_



not modelled 9.1 29
PDB header:photosynthesis
Chain: G: PDB Molecule:light-harvesting protein b-1015 beta chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
91c6et5R_



not modelled 9.1 29
PDB header:photosynthesis
Chain: R: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
92c6et5d_



not modelled 9.1 29
PDB header:photosynthesis
Chain: D: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
93c6et5U_



not modelled 9.1 29
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
94c6et52_



not modelled 9.1 29
PDB header:photosynthesis
Chain: 2: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
95c6et5p_



not modelled 9.1 29
PDB header:photosynthesis
Chain: P: PDB Molecule:light-harvesting protein b-1015 alpha chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
96c5f42B_



not modelled 8.8 22
PDB header:transferase
Chain: B: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: activity and crystal structure of francisella novicida udp-n-2 acetylglucosamine acyltransferase
97c4m5bA_



not modelled 8.7 20
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
98c4m5cA_



not modelled 8.7 20
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
99d1b8db_



not modelled 8.5 14
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below