Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3695_(-)_4137384_4138316
DateFri Aug 9 18:20:38 BST 2019
Unique Job ID5906940b7f9bb5a7
SequenceMSEVVTGDAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.483 Y:39.892 Z:63.073
Model (left) based on template c4nl6C_
Top template information
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
Confidence and coverage
Confidence: 89.4% Coverage: 25%
76 residues ( 25% of your sequence) have been modelled with 89.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4nl6C_



89.4 14
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
2c6eznH_



22.3 20
PDB header:membrane protein
Chain: H: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
3c2dkdA_



18.4 25
PDB header:isomerase
Chain: A: PDB Molecule:phosphoacetylglucosamine mutase;
PDBTitle: crystal structure of n-acetylglucosamine-phosphate mutase,2 a member of the alpha-d-phosphohexomutase superfamily, in3 the product complex
4c6hu9n_



14.4 16
PDB header:oxidoreductase/electron transport
Chain: N: PDB Molecule:cytochrome b;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
5c2zetD_



14.1 29
PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
6c6hwhL_



13.9 15
PDB header:electron transport
Chain: L: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
7c6mizC_



13.7 13
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: human trpm2 ion channel in an adpr-bound state
8c4bjuB_



13.1 26
PDB header:isomerase
Chain: B: PDB Molecule:n-acetylglucosamine-phosphate mutase;
PDBTitle: genetic and structural validation of aspergillus fumigatus2 n-acetylphosphoglucosamine mutase as an antifungal target
9c2yevB_



12.7 13
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
10c2kpyA_



12.4 23
PDB header:allergen
Chain: A: PDB Molecule:major pollen allergen art v 1;
PDBTitle: solution structure of the major allergen of artemisia vulgaris (art v2 1)
11c2m76A_



12.0 20
PDB header:signaling protein
Chain: A: PDB Molecule:carnitine o-palmitoyltransferase 1, brain isoform;
PDBTitle: structure of the regulatory domain of human brain carnitine2 palmitoyltransferase 1
12d1td4a_



10.2 24
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
13d2f1la1



9.8 20
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:RimM C-terminal domain-like
14c6fkhe_



9.7 23
PDB header:membrane protein
Chain: E: PDB Molecule:atp synthase subunit alpha, chloroplastic;
PDBTitle: chloroplast f1fo conformation 2
15c2voyB_



9.6 8
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
16c4o7kA_



8.3 12
PDB header:antitumor protein
Chain: A: PDB Molecule:protein osa;
PDBTitle: crystal structure of oncogenic suppression activity protein - a2 plasmid fertility inhibition factor
17c4xtnJ_



8.0 6
PDB header:membrane protein
Chain: J: PDB Molecule:sodium pumping rhodopsin;
PDBTitle: crystal structure of the light-driven sodium pump kr2 in the2 pentameric red form, ph 4.9
18d1c5ea_



7.8 24
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
19c5wsnC_



7.8 17
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
20c2d3fF_



7.7 35
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
21c2d3fE_



not modelled 7.7 35
PDB header:structural protein
Chain: E: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
22c1x1kC_



not modelled 7.7 35
PDB header:structural protein
Chain: C: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
23c2d3fD_



not modelled 7.7 35
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
24c1x1kA_



not modelled 7.7 35
PDB header:structural protein
Chain: A: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
25c1x1kB_



not modelled 7.7 35
PDB header:structural protein
Chain: B: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
26c1x1kD_



not modelled 7.7 35
PDB header:structural protein
Chain: D: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
27c2d3fA_



not modelled 7.3 36
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
28c2d3fC_



not modelled 7.3 36
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
29c2d3fB_



not modelled 7.3 36
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptides (pro-pro-gly)4-pro-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-pro-hyp-gly-(pro-pro-gly)4
30c1x1kE_



not modelled 7.3 36
PDB header:structural protein
Chain: E: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
31c3a19D_



not modelled 7.0 38
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
32c3a08F_



not modelled 6.9 43
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
33c2d3hF_



not modelled 6.8 41
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
34c2d3hD_



not modelled 6.6 39
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
35c3a19F_



not modelled 6.6 39
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
36c3a08D_



not modelled 6.6 39
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
37c1tmxA_



not modelled 6.5 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from nocardioides2 simplex 3e
38c5sy1A_



not modelled 6.3 11
PDB header:membrane protein/calcium binding protein
Chain: A: PDB Molecule:stra6;
PDBTitle: structure of the stra6 receptor for retinol uptake in complex with2 calmodulin
39c2gw4C_



not modelled 6.3 47
PDB header:luminescent protein
Chain: C: PDB Molecule:kaede;
PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form
40c2hacA_



not modelled 6.2 17
PDB header:membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
41c2hacB_



not modelled 6.2 17
PDB header:membrane protein
Chain: B: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
42c5fn2B_



not modelled 6.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:presenilin-1;
PDBTitle: cryo-em structure of gamma secretase in complex with a drug dapt
43c6emkI_



not modelled 5.9 42
PDB header:signaling protein
Chain: I: PDB Molecule:target of rapamycin complex 2 subunit avo1;
PDBTitle: cryo-em structure of saccharomyces cerevisiae target of rapamycin2 complex 2
44c1x1kF_



not modelled 5.7 30
PDB header:structural protein
Chain: F: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
45c5icuA_



not modelled 5.7 40
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
46c2l6wB_



not modelled 5.7 16
PDB header:membrane protein
Chain: B: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
47c2l6wA_



not modelled 5.7 16
PDB header:membrane protein
Chain: A: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
48d1hywa_



not modelled 5.6 17
Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
49c4aq5C_



not modelled 5.4 16
PDB header:membrane protein
Chain: C: PDB Molecule:acetylcholine receptor delta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
50c2bg9C_



not modelled 5.4 16
PDB header:ion channel/receptor
Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
51c2rq7A_



not modelled 5.2 38
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase epsilon chain;
PDBTitle: solution structure of the epsilon subunit chimera combining2 the n-terminal beta-sandwich domain from t. elongatus bp-13 f1 and the c-terminal alpha-helical domain from spinach4 chloroplast f1
52c5n1tM_



not modelled 5.1 33
PDB header:oxidoreductase
Chain: M: PDB Molecule:copc;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
53c2cuoF_



not modelled 5.1 30
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below