Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3697A_(RVBD3697A)_4140417_4140641
DateFri Aug 9 18:20:39 BST 2019
Unique Job IDa8230c2da973eca8
SequenceMRTTIDLDDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.486 Y:33.972 Z:39.305
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 56.0% Coverage: 64%
47 residues ( 64% of your sequence) have been modelled with 56.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_
56.0 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2d2bsqe1
54.9 16
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
3c2h1oH_
52.6 16
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
4c6a7vU_
37.2 47
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
5c6ochB_
26.7 45
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp complex bound with parthenolide
6c6nvqB_
25.4 45
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of the vash1-svbp complex
7c6qbyB_
25.4 45
PDB header:cytosolic protein
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash 2 in complex with svbp
8c6qbyD_
25.3 42
PDB header:cytosolic protein
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash 2 in complex with svbp
9c6j4qK_
25.1 42
PDB header:hydrolase
Chain: K: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
10c3kk4B_
23.2 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
11c6j4oB_
22.9 42
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
12c6j4qG_
22.3 42
PDB header:hydrolase
Chain: G: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
13d2g9ha2
22.1 42
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
14c6j8nA_
21.3 47
PDB header:peptide binding protein/hydrolase
Chain: A: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of svbp-vash1 complex, mutation c169a of vash1
15c6j8nC_
21.3 47
PDB header:peptide binding protein/hydrolase
Chain: C: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of svbp-vash1 complex, mutation c169a of vash1
16c6j4qB_
21.3 42
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
17c6j4qD_
21.0 42
PDB header:hydrolase
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
18c6ocgB_
20.8 47
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp complex bound with epoy
19c6j7bB_
20.4 45
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp in complex with epoy
20c6j4sB_
20.2 42
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
21c6jzcD_
not modelled 19.8 42
PDB header:cytosolic protein
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination
22d1iaka2
not modelled 19.8 58
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
23c6ochD_
not modelled 19.6 47
PDB header:hydrolase/hydrolase inhibitor
Chain: D: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of vash1-svbp complex bound with parthenolide
24d1klua2
not modelled 19.5 42
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
25d2p24a2
not modelled 19.4 50
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
26d1s9va2
not modelled 19.3 50
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
27c6j9hC_
not modelled 19.1 47
PDB header:peptide binding protein/hydrolase
Chain: C: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of svbp-vash1 complex
28c6jzcC_
not modelled 19.0 42
PDB header:cytosolic protein
Chain: C: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination
29c6jzdB_
not modelled 19.0 42
PDB header:cytosolic protein
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of peptide-bound vash2-svbp complex
30c6j91A_
not modelled 18.8 47
PDB header:peptide binding protein/hydrolase
Chain: A: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structure of a hypothetical protease
31d1jk8a2
not modelled 18.7 50
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
32d1es0a2
not modelled 18.5 58
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
33d1muja2
not modelled 18.4 58
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
34c6j4vB_
not modelled 17.9 42
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
35d1uvqa2
not modelled 16.9 42
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
36c6j4uB_
not modelled 16.7 47
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
37c5x3tA_
not modelled 16.5 30
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
38d1fnga2
not modelled 16.3 25
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
39c6j9hA_
not modelled 15.8 47
PDB header:peptide binding protein/hydrolase
Chain: A: PDB Molecule:small vasohibin-binding protein;
PDBTitle: crystal structure of svbp-vash1 complex
40c5f5uB_
not modelled 15.7 39
PDB header:splicing
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the snu23-prp38-mfap1(217-258) complex of2 chaetomium thermophilum
41c6j4pB_
not modelled 12.8 42
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
42d1q9ja2
not modelled 12.3 20
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
43d2b5ua2
not modelled 10.1 50
Fold:Cloacin translocation domain
Superfamily:Cloacin translocation domain
Family:Cloacin translocation domain
44c2yy0D_
not modelled 10.0 37
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
45c1gjjA_
not modelled 9.5 35
PDB header:membrane protein
Chain: A: PDB Molecule:lap2;
PDBTitle: n-terminal constant region of the nuclear envelope protein2 lap2
46c6mbeB_
not modelled 8.8 60
PDB header:apoptosis
Chain: B: PDB Molecule:dm7;
PDBTitle: human mcl-1 in complex with the designed peptide dm7
47c3fmtF_
not modelled 8.7 29
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
48c3ugsB_
not modelled 8.7 33
PDB header:transferase
Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni
49c3tbxB_
not modelled 7.8 38
PDB header:immune system/agonist
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the murine class i major histocompatibility2 complex h-2db in complex with lcmv-derived gp33 altered peptide3 ligand v3p
50c5f5uH_
not modelled 7.7 35
PDB header:splicing
Chain: H: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the snu23-prp38-mfap1(217-258) complex of2 chaetomium thermophilum
51c4bl6A_
not modelled 6.9 40
PDB header:protein transport
Chain: A: PDB Molecule:protein bicaudal d;
PDBTitle: bicaudal-d uses a parallel, homodimeric coiled coil with heterotypic2 registry to co-ordinate recruitment of cargos to dynein
52d2joka1
not modelled 6.2 43
Fold:SopE-like GEF domain
Superfamily:SopE-like GEF domain
Family:SopE-like GEF domain
53d1ueha_
not modelled 5.8 23
Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
54c2vfwB_
not modelled 5.8 23
PDB header:transferase
Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase;
PDBTitle: rv1086 native
55c2axcA_
not modelled 5.6 50
PDB header:hydrolase
Chain: A: PDB Molecule:colicin e7;
PDBTitle: crystal structure of cole7 translocation domain
56c4q9mA_
not modelled 5.4 30
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:isoprenyl transferase;
PDBTitle: crystal structure of upps in complex with fpp and an allosteric2 inhibitor

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