Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3705A_(-)_4149269_4149658
DateFri Aug 9 18:20:40 BST 2019
Unique Job ID753b29425f36d1d1
SequenceMTETPQPAAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.278 Y:27.209 Z:53.901
Model (left) based on template c4ymkA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
Confidence and coverage
Confidence: 82.0% Coverage: 57%
74 residues ( 57% of your sequence) have been modelled with 82.0% confidence by the single highest scoring template.
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Warning: 60% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ymkA_
82.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
2c2m0qA_
69.5 23
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
3c2k21A_
54.5 27
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
4c6a69B_
48.4 29
PDB header:structural protein
Chain: B: PDB Molecule:neuroplastin;
PDBTitle: cryo-em structure of a p-type atpase
5c6a0aA_
38.7 48
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
6c1x1kF_
36.8 68
PDB header:structural protein
Chain: F: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
7c6a0aC_
34.0 52
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
8c6a0aB_
34.0 52
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
9c2jo1A_
29.2 23
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
10c6nhyA_
29.0 38
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
11c6nhyB_
29.0 38
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
12c6nhyC_
29.0 38
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
13c2mkvA_
28.7 23
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
14c3jcuj_
28.5 47
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
15c6a0cB_
28.1 48
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
16c6hwhB_
26.2 13
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
17c5xnmj_
25.9 44
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
18c4zyoA_
25.1 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase;
PDBTitle: crystal structure of human integral membrane stearoyl-coa desaturase2 with substrate
19c2k1vB_
25.0 54
PDB header:hormone
Chain: B: PDB Molecule:relaxin-3;
PDBTitle: r3/i5 relaxin chimera
20c2k1aA_
24.6 13
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
21c2ndjA_
not modelled 24.5 25
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
22c2jp3A_
not modelled 24.4 21
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
23c5oqtC_
not modelled 23.6 45
PDB header:transport protein
Chain: C: PDB Molecule:uncharacterized protein ynem;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
24c6f34C_
not modelled 23.6 45
PDB header:membrane protein
Chain: C: PDB Molecule:mgts;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue bound to arginine.
25c6a0cC_
not modelled 23.5 52
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
26c6a0cA_
not modelled 23.5 52
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
27c3a0mD_
not modelled 19.9 64
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
28c2k9hA_
not modelled 19.9 67
PDB header:metal binding protein
Chain: A: PDB Molecule:glycoprotein;
PDBTitle: the hantavirus glycoprotein g1 tail contains a dual cchc-2 type classical zinc fingers
29c6c14B_
not modelled 19.0 15
PDB header:membrane protein, metal transport
Chain: B: PDB Molecule:lhfpl tetraspan subfamily member 5 protein;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
30c3a0mB_
not modelled 18.8 65
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
31c4yzfA_
not modelled 18.5 19
PDB header:immune system
Chain: A: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the anion exchanger domain of human erythrocyte2 band 3
32c3a0mE_
not modelled 17.9 58
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
33c3a0mC_
not modelled 17.9 64
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
34c2v53C_
not modelled 17.6 54
PDB header:cell adhesion
Chain: C: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
35c2v53D_
not modelled 17.6 54
PDB header:cell adhesion
Chain: D: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
36c2v53B_
not modelled 17.6 54
PDB header:cell adhesion
Chain: B: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
37c2k1kA_
not modelled 17.4 83
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
38c2k1lB_
not modelled 17.4 83
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
39c2k1lA_
not modelled 17.4 83
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
40c2k1kB_
not modelled 17.4 83
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
41c3ctwB_
not modelled 17.0 40
PDB header:protein binding
Chain: B: PDB Molecule:rcda;
PDBTitle: crystal structure of rcda from caulobacter crescentus cb15
42d1ug0a_
not modelled 17.0 18
Fold:Surp module (SWAP domain)
Superfamily:Surp module (SWAP domain)
Family:Surp module (SWAP domain)
43c3a1hA_
not modelled 16.2 58
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
44c2kncA_
not modelled 15.3 13
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
45c3a0mA_
not modelled 15.2 64
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
46c6caaA_
not modelled 14.8 12
PDB header:transport protein
Chain: A: PDB Molecule:electrogenic sodium bicarbonate cotransporter 1;
PDBTitle: cryoem structure of human slc4a4 sodium-coupled acid-base transporter2 nbce1
47c3a1hF_
not modelled 14.7 65
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
48c3hcjB_
not modelled 14.5 40
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)
49c6nhwC_
not modelled 13.6 54
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
50c6nhwE_
not modelled 13.6 54
PDB header:immune system
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
51c6nhwF_
not modelled 13.6 54
PDB header:immune system
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
52c6nhwB_
not modelled 13.6 54
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
53c3a1hE_
not modelled 13.5 64
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
54c3a1hC_
not modelled 13.5 64
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
55c3a1hD_
not modelled 13.5 64
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
56c3n23E_
not modelled 13.3 42
PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump
57d1x4oa1
not modelled 13.1 29
Fold:Surp module (SWAP domain)
Superfamily:Surp module (SWAP domain)
Family:Surp module (SWAP domain)
58c4xydB_
not modelled 13.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:norc-like protein;
PDBTitle: nitric oxide reductase from roseobacter denitrificans (rdnor)
59d1qhda1
not modelled 12.8 83
Fold:A virus capsid protein alpha-helical domain
Superfamily:A virus capsid protein alpha-helical domain
Family:vp6, the major capsid protein of group A rotavirus
60c6irtA_
not modelled 12.7 25
PDB header:membrane protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: human lat1-4f2hc complex bound with bch
61d1xcra1
not modelled 12.3 32
Fold:AF0104/ALDC/Ptd012-like
Superfamily:AF0104/ALDC/Ptd012-like
Family:PTD012-like
62c3gcfC_
not modelled 12.2 62
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
63c3a1hB_
not modelled 12.2 58
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
64d2hlya1
not modelled 11.4 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Atu2299-like
65c5sv9B_
not modelled 11.4 9
PDB header:transport protein
Chain: B: PDB Molecule:bor1p boron transporter;
PDBTitle: structure of the slc4 transporter bor1p in an inward-facing2 conformation
66d2axtj1
not modelled 11.4 50
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
67c3a0hJ_
not modelled 11.4 50
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
68c6ae1B_
not modelled 11.1 50
PDB header:rna binding protein
Chain: B: PDB Molecule:crispr-associated protein, tm1810 family;
PDBTitle: crystal structure of csm2 of the type iii-a crispr-cas effector2 complex
69c4bklG_
not modelled 11.1 100
PDB header:immune system
Chain: G: PDB Molecule:j1 epitope;
PDBTitle: crystal structure of the arthritogenic antibody m2139 (fab2 fragment) in complex with the triple-helical j1 peptide
70c2e5zA_
not modelled 11.0 23
PDB header:rna binding protein
Chain: A: PDB Molecule:splicing factor, arginine/serine-rich 8;
PDBTitle: solution structure of the surp2 domain in splicing factor,2 arginine/serine-rich 8
71c2hmnA_
not modelled 10.9 83
PDB header:oxidoreductase
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit;
PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.
72c1z01D_
not modelled 10.8 62
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site modulation by2 rieske-[2fe-2s] center oxidation/reduction
73c3jcuI_
not modelled 10.6 29
PDB header:membrane protein
Chain: I: PDB Molecule:protein photosystem ii reaction center protein i;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
74c3kdpH_
not modelled 10.2 36
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
75c3kdpG_
not modelled 10.2 36
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
76c2hacB_
not modelled 10.2 33
PDB header:membrane protein
Chain: B: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
77c2hacA_
not modelled 10.2 33
PDB header:membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
78c3nvnA_
not modelled 10.1 57
PDB header:viral protein/signaling protein
Chain: A: PDB Molecule:evm139;
PDBTitle: molecular mechanism of guidance cue recognition
79c3gzkA_
not modelled 9.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structure of a. acidocaldarius cellulase cela
80d2axti1
not modelled 9.8 35
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
81c3a0hi_
not modelled 9.8 35
PDB header:electron transport
Chain: I: PDB Molecule:photosystem ii reaction center protein i;
PDBTitle: crystal structure of i-substituted photosystem ii complex
82c6c3rB_
not modelled 9.8 63
PDB header:viral protein
Chain: B: PDB Molecule:cricket paralysis virus 1a protein;
PDBTitle: cricket paralysis virus rnai suppressor protein crpv-1a
83c4hqjG_
not modelled 9.8 36
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
84c5vnyA_
not modelled 9.7 71
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:lethal (2) giant discs 1, isoform b;
PDBTitle: crystal structure of dm14-3 domain of lgd
85c1wqlA_
not modelled 9.1 62
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase;
PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
86c4hqjE_
not modelled 8.9 36
PDB header:hydrolase/transport protein
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of na+,k+-atpase in the na+-bound state
87c3abnC_
not modelled 8.9 65
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
88c3admC_
not modelled 8.8 64
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
89c2de7B_
not modelled 8.7 54
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
90c3admD_
not modelled 8.6 64
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
91c3a0aF_
not modelled 8.6 65
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
92c4bmtB_
not modelled 8.5 37
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of ribonucleotide reductase di-iron nrdf2 from bacillus cereus
93c3a0aA_
not modelled 8.5 58
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
94c2elpA_
not modelled 8.4 63
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
95c3a08F_
not modelled 8.2 65
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
96c3abnB_
not modelled 8.2 64
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
97c3eamB_
not modelled 7.8 23
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:glr4197 protein;
PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel
98c3a08E_
not modelled 7.8 58
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
99c2kogA_
not modelled 7.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure

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Transmembrane helix prediction 

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