Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3711c_(dnaQ)_4155918_4156907
DateFri Aug 9 18:20:40 BST 2019
Unique Job IDf2a6e8c540bd4cd6
SequenceVSHTWGRPAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.531 Y:37.004 Z:46.140
Model (left) based on template d2qxfa1
Top template information
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
Confidence and coverage
Confidence:100.0% Coverage: 50%
165 residues ( 50% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2qxfa1
100.0 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
2c4rg8A_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease i;
PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
3c2p1jB_
100.0 25
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
4c5fkvD_
100.0 26
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase iii epsilon;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
5d1y97a1
100.0 22
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
6c1zbhA_
100.0 18
PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
7d2f96a1
100.0 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
8c3cm6A_
100.0 18
PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
9d2guia1
100.0 28
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
10c3u6fA_
100.0 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant
11c2xriA_
100.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3
12c1zbuB_
100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease
13d3b6oa1
100.0 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
14c5z9xA_
100.0 20
PDB header:plant protein/rna
Chain: A: PDB Molecule:small rna degrading nuclease 1;
PDBTitle: arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
15d1j9aa_
100.0 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
16c3tr8A_
100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
17d1w0ha_
100.0 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
18c5l80B_
100.0 16
PDB header:rna binding protein
Chain: B: PDB Molecule:maternal protein exuperantia,maternal protein exuperantia;
PDBTitle: structure of exuperantia exo-like and sam-like domains
19c2is3B_
100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t
20c6n6jB_
100.0 15
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:rna exonuclease 2 homolog,small fragment nuclease;
PDBTitle: human rexo2 bound to paa
21c4wbqA_
not modelled 100.0 15
PDB header:rna binding protein
Chain: A: PDB Molecule:qde-2-interacting protein;
PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
22c5cy4C_
not modelled 100.0 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:oligoribonuclease;
PDBTitle: crystal structure of an oligoribonuclease from acinetobacter baumannii
23d2igia1
not modelled 100.0 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
24c6n6dA_
not modelled 100.0 18
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: vibrio cholerae oligoribonuclease bound to pag
25c2gbzA_
not modelled 100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
26c6a4dA_
not modelled 100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
27c4fzxC_
not modelled 99.9 27
PDB header:hydrolase/dna
Chain: C: PDB Molecule:exodeoxyribonuclease 10;
PDBTitle: exonuclease x in complex with 3' overhanging duplex dna
28d1wlja_
not modelled 99.9 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
29c2ebuA_
not modelled 99.7 15
PDB header:replication
Chain: A: PDB Molecule:replication factor c subunit 1;
PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1
30d1l7ba_
not modelled 99.7 26
Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA ligase
31d1uoca_
not modelled 99.7 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
32c4czwA_
not modelled 99.6 17
PDB header:gene regulation
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
33d2d5ra1
not modelled 99.5 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
34c2p51A_
not modelled 99.5 18
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:spcc18.06c protein;
PDBTitle: crystal structure of the s. pombe pop2p deadenylation subunit
35c4gmjB_
not modelled 99.4 14
PDB header:rna binding protein
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 7;
PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
36c4q8jA_
not modelled 99.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
37c2cokA_
not modelled 99.4 9
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase-1;
PDBTitle: solution structure of brct domain of poly(adp-ribose)2 polymerase-1
38c4hecB_
not modelled 99.3 18
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
39c2kzzA_
not modelled 99.3 16
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
40d1kfsa1
not modelled 99.3 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
41d1x9ma1
not modelled 99.1 23
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
42d1tgoa1
not modelled 99.1 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
43d1wn7a1
not modelled 99.1 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
44d1qhta1
not modelled 99.1 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
45c5dkuB_
not modelled 99.1 15
PDB header:transferase
Chain: B: PDB Molecule:prex dna polymerase;
PDBTitle: c-terminal his tagged appol exonuclease mutant
46c3d45B_
not modelled 99.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of mouse parn in complex with m7gpppg
47d1d5aa1
not modelled 99.0 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
48c1njzA_
not modelled 99.0 20
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: cytosine-thymine mismatch at the polymerase active site
49c2a1sC_
not modelled 99.0 22
PDB header:hydrolase
Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of native parn nuclease domain
50c2d8mA_
not modelled 99.0 19
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-repair protein xrcc1;
PDBTitle: solution structure of the first brct domain of dna-repair2 protein xrcc1
51c5okiA_
not modelled 98.9 15
PDB header:replication
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
52c1tk0A_
not modelled 98.9 24
PDB header:transferase/electron transport/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
53d2hhva1
not modelled 98.9 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
54c4m8oA_
not modelled 98.9 14
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: ternary complex of dna polymerase epsilon with an incoming datp
55c6r5kA_
not modelled 98.8 17
PDB header:rna binding protein
Chain: A: PDB Molecule:pan2-pan3 deadenylation complex catalytic subunit pan2;
PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
56c6fwkB_
not modelled 98.8 17
PDB header:dna binding protein
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: the crystal structure of pol2core-m644g in complex with dna and an2 incoming nucleotide
57c5zo4B_
not modelled 98.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:putative 3'-5' exonuclease family protein;
PDBTitle: inactive state of the nuclease
58c4bmcA_
not modelled 98.7 14
PDB header:replication
Chain: A: PDB Molecule:s-m checkpoint control protein rad4;
PDBTitle: crystal structure of s.pombe rad4 brct1,2
59c2couA_
not modelled 98.7 12
PDB header:cell cycle
Chain: A: PDB Molecule:ect2 protein;
PDBTitle: solution structure of the second brct domain of epithelial2 cell transforming 2
60c3l3eA_
not modelled 98.7 13
PDB header:cell cycle
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of the sixth brct domain of human topbp1
61c2xnkA_
not modelled 98.7 15
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: structure and function of the rad9-binding region of the dna damage2 checkpoint adaptor topbp1
62c2vwkA_
not modelled 98.7 15
PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
63c4x0pB_
not modelled 98.7 9
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase theta;
PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
64c2gv9B_
not modelled 98.7 13
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
65c5mdnB_
not modelled 98.7 22
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis
66c1d5aA_
not modelled 98.7 17
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
67c2gv9A_
not modelled 98.7 12
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
68c3ef0A_
not modelled 98.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase;
PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd phosphatase
69c4n40A_
not modelled 98.6 13
PDB header:cell cycle
Chain: A: PDB Molecule:protein ect2;
PDBTitle: crystal structure of human epithelial cell-transforming sequence 22 protein
70c3iayA_
not modelled 98.5 19
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta
71c3ef1A_
not modelled 98.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase;
PDBTitle: the structure of fcp1, an essential rna polymerase ii ctd phosphatase
72d1q8ia1
not modelled 98.5 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
73d1cdza_
not modelled 98.5 11
Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA-repair protein XRCC1
74d1wf6a_
not modelled 98.5 16
Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA topoisomerase II binding protein 1, TopBP1
75c3ii6Y_
not modelled 98.5 15
PDB header:ligase/dna binding protein
Chain: Y: PDB Molecule:dna ligase 4;
PDBTitle: structure of human xrcc4 in complex with the tandem brct2 domains of dna ligaseiv.
76c3ktfB_
not modelled 98.5 12
PDB header:cell cycle
Chain: B: PDB Molecule:microcephalin;
PDBTitle: structure of the n-terminal brct domain of human microcephalin2 (mcph1).
77c5c0xK_
not modelled 98.5 16
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to structured2 rna
78c2e2wA_
not modelled 98.4 16
PDB header:ligase
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: solution structure of the first brct domain of human dna2 ligase iv
79c1yt3A_
not modelled 98.4 18
PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
80c4bmdA_
not modelled 98.4 18
PDB header:replication
Chain: A: PDB Molecule:s-m checkpoint control protein rad4;
PDBTitle: crystal structure of s.pombe rad4 brct3,4
81c4xviA_
not modelled 98.4 7
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase nu;
PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
82c5n2hA_
not modelled 98.4 13
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
83d1ih7a1
not modelled 98.4 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
84c4fydA_
not modelled 98.4 11
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of yeast dna polymerase alpha bound to dna/rna and2 dgtp
85d1t15a2
not modelled 98.3 14
Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
86c2ebwA_
not modelled 98.3 20
PDB header:transferase
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: solution structure of the brct domain from human dna repair2 protein rev1
87d1noya_
not modelled 98.3 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
88c3ueoB_
not modelled 98.3 13
PDB header:peptide binding protein
Chain: B: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct4/5 domains in complex with a phospho-2 peptide
89c4ktqA_
not modelled 98.3 19
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (large fragment of dna polymerase i);
PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
90c5exrG_
not modelled 98.3 16
PDB header:replication
Chain: G: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of human primosome
91d1kzyc1
not modelled 98.3 12
Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
92c4oo1J_
not modelled 98.3 16
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
93d1yt3a3
not modelled 98.2 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
94c1q8iA_
not modelled 98.2 20
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii
95d1l0ba1
not modelled 98.2 15
Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
96c3cymA_
not modelled 98.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
97c2vxcA_
not modelled 98.1 13
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9;
PDBTitle: structure of the crb2-brct2 domain complex with phosphopeptide.
98c4q5vA_
not modelled 98.1 16
PDB header:transferase/dna/rna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of the catalytic core of human dna polymerase alpha2 in ternary complex with an rna-primed dna template and aphidicolin
99d1t15a1
not modelled 98.1 13
Fold:BRCT domain
Superfamily:BRCT domain
Family:BRCT domain
100c2e6mA_
not modelled 98.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog;
PDBTitle: structure of mouse werner exonuclease domain
101c4ztuA_
not modelled 98.1 20
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
102c1kzyD_
not modelled 98.1 11
PDB header:dna binding protein, protein binding
Chain: D: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: crystal structure of the 53bp1 brct region complexed to2 tumor suppressor p53
103c4id3B_
not modelled 98.1 11
PDB header:protein binding
Chain: B: PDB Molecule:dna repair protein rev1;
PDBTitle: crystal structure of the brct domain of s. cerevisiae rev1
104c1y98A_
not modelled 98.0 14
PDB header:antitumor protein
Chain: A: PDB Molecule:breast cancer type 1 susceptibility protein;
PDBTitle: structure of the brct repeats of brca1 bound to a ctip2 phosphopeptide.
105c1s5jA_
not modelled 98.0 23
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
106c2dtuA_
not modelled 98.0 15
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
107c2r1zB_
not modelled 98.0 13
PDB header:antitumor protein
Chain: B: PDB Molecule:brca1-associated ring domain protein 1;
PDBTitle: crystal structure of the bard1 brct repeat
108c3l40A_
not modelled 97.9 5
PDB header:cell cycle
Chain: A: PDB Molecule:brct-containing protein 1;
PDBTitle: crystal structure of s. pombe brc1 brct5-brct6 domains
109c3al3A_
not modelled 97.9 14
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:dna topoisomerase 2-binding protein 1;
PDBTitle: crystal structure of topbp1 brct7/8-bach1 peptide complex
110c2azmB_
not modelled 97.8 18
PDB header:cell cycle
Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1;
PDBTitle: crystal structure of the mdc1 brct repeat in complex with2 the histone tail of gamma-h2ax
111c2jw5A_
not modelled 97.8 13
PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: polymerase lambda brct domain
112c1l0bA_
not modelled 97.8 14
PDB header:unknown function
Chain: A: PDB Molecule:brca1;
PDBTitle: crystal structure of rat brca1 tandem-brct region
113d2hbka2
not modelled 97.7 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
114d1s5ja1
not modelled 97.7 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
115c2hbkA_
not modelled 97.6 17
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
116c6k1dB_
not modelled 97.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:exonuclease 3'-5' domain-containing protein 2;
PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
117c2coeA_
not modelled 97.5 17
PDB header:transferase
Chain: A: PDB Molecule:deoxynucleotidyltransferase, terminal variant;
PDBTitle: solution structure of brct domain of terminal2 deoxynucleotidyltransferase
118c3t1nA_
not modelled 97.5 7
PDB header:cell cycle/peptide
Chain: A: PDB Molecule:microcephalin;
PDBTitle: structure of human microcephalin (mcph1) tandem brct domains in2 complex with a cdc27 phosphopeptide
119c1z56C_
not modelled 97.5 16
PDB header:ligase
Chain: C: PDB Molecule:dna ligase iv;
PDBTitle: co-crystal structure of lif1p-lig4p
120c4nlbA_
not modelled 97.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:ribosomal rna processing protein 6;
PDBTitle: crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below