Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3719_(-)_4162484_4163896
DateFri Aug 9 18:20:41 BST 2019
Unique Job ID6a41d34c75149429
SequenceMQGQLSRTRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.536 Y:48.960 Z:60.229
Model (left) based on template c2vfvA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:xylitol oxidase;
PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite
Confidence and coverage
Confidence:100.0% Coverage: 85%
399 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
466 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2vfvA_
100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:xylitol oxidase;
PDBTitle: alditol oxidase from streptomyces coelicolor a3(2): complex2 with sulphite
2c4ml8C_
100.0 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytokinin oxidase 2;
PDBTitle: structure of maize cytokinin oxidase/dehydrogenase 2 (zmcko2)
3c4fdoA_
100.0 17
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:oxidoreductase dpre1;
PDBTitle: mycobacterium tuberculosis dpre1 in complex with ct319
4c3bw7A_
100.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytokinin dehydrogenase 1;
PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1
5c4oalB_
100.0 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytokinin dehydrogenase 4;
PDBTitle: crystal structure of maize cytokinin oxidase/dehydrogenase 4 (zmcko4)2 in complex with phenylurea inhibitor cppu in alternative spacegroup
6c6c80B_
100.0 20
PDB header:immune system
Chain: B: PDB Molecule:cytokinin oxidase luckx1.1;
PDBTitle: crystal structure of a flax cytokinin oxidase
7c4bc9C_
100.0 16
PDB header:transferase
Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase, peroxisomal;
PDBTitle: mammalian alkyldihydroxyacetonephosphate synthase: wild-type, adduct2 with cyanoethyl
8c3pm9A_
100.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution
9c2exrA_
100.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytokinin dehydrogenase 7;
PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx) from2 arabidopsis thaliana at5g21482
10c2bvfA_
100.0 15
PDB header:oxidase
Chain: A: PDB Molecule:6-hydroxy-d-nicotine oxidase;
PDBTitle: crystal structure of 6-hydoxy-d-nicotine oxidase from2 arthrobacter nicotinovorans. crystal form 3 (p1)
11c4ud8B_
100.0 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:fad-binding and bbe domain-containing protein;
PDBTitle: atbbe15
12c3vteA_
100.0 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:tetrahydrocannabinolic acid synthase;
PDBTitle: crystal structure of tetrahydrocannabinolic acid synthase from2 cannabis sativa
13c5l6fA_
100.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad linked oxidase-like protein;
PDBTitle: xylooligosaccharide oxidase from myceliophthora thermophila c1 in2 complex with xylobiose
14c1wveB_
100.0 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-cresol dehydrogenase [hydroxylating]
PDBTitle: p-cresol methylhydroxylase: alteration of the structure of2 the flavoprotein subunit upon its binding to the3 cytochrome subunit
15c6f74B_
100.0 12
PDB header:flavoprotein
Chain: B: PDB Molecule:alcohol oxidase;
PDBTitle: crystal structure of vao-type flavoprotein mtvao713 from2 myceliophthora thermophila c1
16c3w8wA_
100.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative fad-dependent oxygenase encm;
PDBTitle: the crystal structure of encm
17c6eo5A_
100.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ppbbe-like 1 d396n;
PDBTitle: physcomitrella patens bbe-like 1 variant d396n
18c3tsjA_
100.0 13
PDB header:allergen, oxidoreductase
Chain: A: PDB Molecule:pollen allergen phl p 4;
PDBTitle: crystal structure of phl p 4, a grass pollen allergen with glucose2 dehydrogenase activity
19c1zr6A_
100.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucooligosaccharide oxidase;
PDBTitle: the crystal structure of an acremonium strictum glucooligosaccharide2 oxidase reveals a novel flavinylation
20c3rjaA_
100.0 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:carbohydrate oxidase;
PDBTitle: crystal structure of carbohydrate oxidase from microdochium nivale in2 complex with substrate analogue
21c5d79B_
not modelled 100.0 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:berberine bridge enzyme-like protein;
PDBTitle: structure of bbe-like #28 from arabidopsis thaliana
22c6f73B_
not modelled 100.0 16
PDB header:flavoprotein
Chain: B: PDB Molecule:mtvao615;
PDBTitle: crystal structure of vao-type flavoprotein mtvao615 at ph 5.0 from2 myceliophthora thermophila c1
23c3fwaA_
not modelled 100.0 15
PDB header:flavoprotein
Chain: A: PDB Molecule:reticuline oxidase;
PDBTitle: structure of berberine bridge enzyme, c166a variant in complex with2 (s)-reticuline
24c1i19B_
not modelled 100.0 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:cholesterol oxidase;
PDBTitle: crystal structure of cholesterol oxidase from b.sterolicum
25c5fxpA_
not modelled 100.0 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:eugenol oxidase;
PDBTitle: crystal structure of eugenol oxidase in complex with2 vanillin
26c3d2hA_
not modelled 100.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:berberine bridge-forming enzyme;
PDBTitle: structure of berberine bridge enzyme from eschscholzia californica,2 monoclinic crystal form
27c5i1wD_
not modelled 100.0 11
PDB header:oxidoreductase
Chain: D: PDB Molecule:crmk;
PDBTitle: crystal structure of crmk, a flavoenzyme involved in the shunt product2 recycling mechanism in caerulomycin biosynthesis
28c3popD_
not modelled 100.0 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:gilr oxidase;
PDBTitle: the crystal structure of gilr, an oxidoreductase that catalyzes the2 terminal step of gilvocarcin biosynthesis
29c2ipiD_
not modelled 100.0 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:aclacinomycin oxidoreductase (aknox);
PDBTitle: crystal structure of aclacinomycin oxidoreductase
30c1ahuB_
not modelled 100.0 13
PDB header:flavoenzyme
Chain: B: PDB Molecule:vanillyl-alcohol oxidase;
PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol
31c3js8A_
not modelled 100.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: solvent-stable cholesterol oxidase
32c2wdwB_
not modelled 100.0 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative hexose oxidase;
PDBTitle: the native crystal structure of the primary hexose oxidase (2 dbv29) in antibiotic a40926 biosynthesis
33c2y3rC_
not modelled 100.0 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:taml;
PDBTitle: structure of the tirandamycin-bound fad-dependent tirandamycin oxidase2 taml in p21 space group
34c2uuvC_
not modelled 100.0 14
PDB header:transferase
Chain: C: PDB Molecule:alkyldihydroxyacetonephosphate synthase;
PDBTitle: alkyldihydroxyacetonephosphate synthase in p1
35c1f0xA_
not modelled 100.0 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: crystal structure of d-lactate dehydrogenase, a peripheral membrane2 respiratory enzyme.
36d1w1oa2
not modelled 100.0 26
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
37d1wvfa2
not modelled 100.0 17
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
38d1e8ga2
not modelled 100.0 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
39d2i0ka2
not modelled 100.0 15
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
40c2yvsA_
not modelled 100.0 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycolate oxidase subunit glce;
PDBTitle: crystal structure of glycolate oxidase subunit glce from thermus2 thermophilus hb8
41d1f0xa2
not modelled 100.0 15
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:FAD-linked oxidases, N-terminal domain
42d1uxya1
not modelled 99.9 11
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
43d1hska1
not modelled 99.9 14
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
44c4pytA_
not modelled 99.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: crystal structure of a murb family ep-udp-n-acetylglucosamine2 reductase
45c4jayC_
not modelled 99.9 16
PDB header:oxidoreductase
Chain: C: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: crystal structure of p. aeruginosa murb in complex with nadp+
46c1hskA_
not modelled 99.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: crystal structure of s. aureus murb
47c1mbbA_
not modelled 99.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:uridine diphospho-n-acetylenolpyruvylglucosamine
PDBTitle: oxidoreductase
48c5jzxB_
not modelled 99.8 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: crystal structure of udp-n-acetylenolpyruvoylglucosamine reductase2 (murb) from mycobacterium tuberculosis
49c3i99A_
not modelled 99.8 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvoylglucosamine reductase;
PDBTitle: the crystal structure of the udp-n-acetylenolpyruvoylglucosamine2 reductase from the vibrio cholerae o1 biovar tor
50c2gquA_
not modelled 99.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-n-acetylenolpyruvylglucosamine reductase;
PDBTitle: crystal structure of udp-n-acetylenolpyruvylglucosamine2 reductase (murb) from thermus caldophilus
51d1w1oa1
not modelled 99.5 14
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Cytokinin dehydrogenase 1
52d2i0ka1
not modelled 99.3 11
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Cholesterol oxidase
53d1e8ga1
not modelled 98.2 9
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
54d1f0xa1
not modelled 97.7 11
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:D-lactate dehydrogenase
55d1wvfa1
not modelled 97.4 12
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
56d1ffvc2
not modelled 94.7 17
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
57d1n62c2
not modelled 94.0 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
58c5y6qB_
not modelled 93.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldehyde oxidase medium subunit;
PDBTitle: crystal structure of an aldehyde oxidase from methylobacillus sp.2 ky4400
59d1t3qc2
not modelled 92.3 20
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
60c3hrdC_
not modelled 87.8 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:nicotinate dehydrogenase fad-subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
61d1v97a6
not modelled 86.9 8
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
62c1n62C_
not modelled 86.7 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:carbon monoxide dehydrogenase medium chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
63c1ffuF_
not modelled 86.7 19
PDB header:hydrolase
Chain: F: PDB Molecule:cutm, flavoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
64d3b9jb2
not modelled 86.6 7
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
65c2w3rG_
not modelled 86.4 14
PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
66c2gvsA_
not modelled 86.2 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:chemosensory protein csp-sg4;
PDBTitle: nmr solution structure of cspsg4
67c4zohB_
not modelled 85.3 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase fad-binding subunit;
PDBTitle: crystal structure of glyceraldehyde oxidoreductase
68d1kx9b_
not modelled 85.3 17
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
69d1n8va_
not modelled 84.5 18
Fold:alpha-alpha superhelix
Superfamily:Chemosensory protein Csp2
Family:Chemosensory protein Csp2
70c1t3qF_
not modelled 84.0 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:quinoline 2-oxidoreductase medium subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
71d1jroa4
not modelled 83.4 9
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
72c3etrM_
not modelled 82.5 7
PDB header:oxidoreductase
Chain: M: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of xanthine oxidase in complex with lumazine
73c3b9jJ_
not modelled 82.5 7
PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
74c5g5hB_
not modelled 72.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative xanthine dehydrogenase yags fad-binding subunit;
PDBTitle: escherichia coli periplasmic aldehyde oxidase r440h mutant
75c1wygA_
not modelled 70.2 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
76d1rm6b2
not modelled 56.2 22
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CO dehydrogenase flavoprotein N-terminal domain-like
77c1rm6E_
not modelled 55.2 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:4-hydroxybenzoyl-coa reductase beta subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
78d1qupa2
not modelled 47.2 17
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
79c3zyvA_
not modelled 46.4 2
PDB header:oxidoreductase
Chain: A: PDB Molecule:aox3;
PDBTitle: crystal structure of the mouse liver aldehyde oxidase 3 (maox3)
80c1qupA_
not modelled 43.7 7
PDB header:chaperone
Chain: A: PDB Molecule:superoxide dismutase 1 copper chaperone;
PDBTitle: crystal structure of the copper chaperone for superoxide dismutase
81d1fe0a_
not modelled 42.0 14
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
82c4ru3A_
not modelled 40.2 20
PDB header:cell invasion
Chain: A: PDB Molecule:puncturing protein gp41;
PDBTitle: crystal structure of the cell puncturing protein gp41 from pseudomonas2 phage sn
83c1jk9D_
not modelled 33.8 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: heterodimer between h48f-ysod1 and yccs
84d1bf2a1
not modelled 31.6 39
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
85d1poib_
not modelled 30.1 11
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
86c4y2iA_
not modelled 28.4 29
PDB header:metal transport
Chain: A: PDB Molecule:putative metal-binding transport protein;
PDBTitle: gold ion bound to golb
87c4uhxA_
not modelled 26.0 4
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidase;
PDBTitle: human aldehyde oxidase in complex with phthalazine and thioridazine
88d2o1ra1
not modelled 25.4 15
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
89c2crlA_
not modelled 24.8 17
PDB header:chaperone
Chain: A: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: the apo form of hma domain of copper chaperone for2 superoxide dismutase
90c2k2pA_
not modelled 23.5 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1203;
PDBTitle: solution nmr structure of protein atu1203 from agrobacterium2 tumefaciens. northeast structural genomics consortium (nesg) target3 att10, ontario center for structural proteomics target atc1183
91c5jbfB_
not modelled 22.9 33
PDB header:transferase
Chain: B: PDB Molecule:inactive glucansucrase;
PDBTitle: 4,6-alpha-glucanotransferase gtfb (d1015n mutant) from lactobacillus2 reuteri 121 complexed with maltopentaose
92c2hldH_
not modelled 19.8 18
PDB header:hydrolase
Chain: H: PDB Molecule:atp synthase delta chain, mitochondrial;
PDBTitle: crystal structure of yeast mitochondrial f1-atpase
93c3aicC_
not modelled 19.7 22
PDB header:transferase
Chain: C: PDB Molecule:glucosyltransferase-si;
PDBTitle: crystal structure of glucansucrase from streptococcus mutans
94c6fp6X_
not modelled 19.4 13
PDB header:metal binding protein
Chain: X: PDB Molecule:copper chaperone for superoxide dismutase;
PDBTitle: complex of human cu,zn sod1 with the human copper chaperone for sod12 in a compact conformation
95c3pqiA_
not modelled 18.8 28
PDB header:viral protein
Chain: A: PDB Molecule:gene product 138;
PDBTitle: crystal structure of the bacteriophage phi92 membrane-piercing protein2 gp138
96d1t47a2
not modelled 18.6 23
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
97c3ttoD_
not modelled 17.5 28
PDB header:transferase
Chain: D: PDB Molecule:dextransucrase;
PDBTitle: crystal structure of leuconostoc mesenteroides nrrl b-1299 n-2 terminally truncated dextransucrase dsr-e in triclinic form
98c2mzqA_
not modelled 17.4 7
PDB header:rna binding protein
Chain: A: PDB Molecule:single-strand telomeric dna-binding protein gbp2;
PDBTitle: nmr structure of the rrm3 domain of gbp2
99d1sb6a_
not modelled 16.8 17
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain

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Transmembrane helix prediction 

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