Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3723_(-)_4168714_4169478
DateFri Aug 9 18:20:42 BST 2019
Unique Job ID767e2df216381ab8
SequenceMGRKVAVLWH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.807 Y:15.525 Z:16.472
Model (left) based on template c2ctoA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
Confidence and coverage
Confidence: 59.8% Coverage: 5%
12 residues ( 5% of your sequence) have been modelled with 59.8% confidence by the single highest scoring template.
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Warning: 52% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ctoA_
59.8 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
2c4nfuB_
59.4 41
PDB header:signaling protein
Chain: B: PDB Molecule:senescence-associated carboxylesterase 101;
PDBTitle: structure of the central plant immunity signaling node eds1 in complex2 with its interaction partner sag101
3c4nfuA_
54.6 38
PDB header:signaling protein
Chain: A: PDB Molecule:eds1;
PDBTitle: structure of the central plant immunity signaling node eds1 in complex2 with its interaction partner sag101
4c3ngmB_
35.3 33
PDB header:hydrolase
Chain: B: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of lipase from gibberella zeae
5c3uueA_
35.1 45
PDB header:hydrolase
Chain: A: PDB Molecule:lip1, secretory lipase (family 3);
PDBTitle: crystal structure of mono- and diacylglycerol lipase from malassezia2 globosa
6c3o0dF_
33.4 37
PDB header:hydrolase
Chain: F: PDB Molecule:triacylglycerol lipase;
PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution
7c5xk2A_
31.7 32
PDB header:hydrolase
Chain: A: PDB Molecule:diacylglycerol lipase;
PDBTitle: crystal structure of mono- and diacylglycerol lipase from aspergillus2 oryzae
8d1tiaa_
27.9 26
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
9d1lgya_
27.7 37
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
10d3tgla_
25.7 32
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
11c6qppA_
25.5 32
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: rhizomucor miehei lipase propeptide complex, native
12d1tiba_
25.0 53
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
13c2kncB_
24.7 26
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
14c2rmzA_
24.3 26
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
15c3g7nA_
24.3 32
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of a triacylglycerol lipase from penicillium2 expansum at 1.3
16c2yijA_
23.6 27
PDB header:hydrolase
Chain: A: PDB Molecule:phospholipase a1-iigamma;
PDBTitle: crystal structure of phospholipase a1
17d1kf6d_
23.2 23
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
18d1dwma_
23.0 60
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
19c2ci2I_
22.9 50
PDB header:proteinase inhibitor (chymotrypsin)
Chain: I: PDB Molecule:chymotrypsin inhibitor 2;
PDBTitle: crystal and molecular structure of the serine proteinase inhibitor ci-2 2 from barley seeds
20c3rdyA_
22.9 60
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:bwi-1=protease inhibitor/trypsin inhibitor;
PDBTitle: crystal structure of buckwheat trypsin inhibitor rbti at 1.84 angstrom2 resolution
21d1to2i_
not modelled 22.9 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
22d2snii_
not modelled 22.7 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
23d1ypci_
not modelled 22.6 50
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
24c1vbwA_
not modelled 22.6 60
PDB header:protein binding
Chain: A: PDB Molecule:trypsin inhibitor bgit;
PDBTitle: crystal structure of bitter gourd trypsin inhibitor
25d1csei_
not modelled 22.5 40
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
26c1hymA_
not modelled 22.4 56
PDB header:hydrolase (serine proteinase)
Chain: A: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
27d1uwca_
not modelled 22.3 47
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
28c5gw8A_
not modelled 21.7 32
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical secretory lipase (family 3);
PDBTitle: crystal structure of a putative dag-like lipase (mgmdl2) from2 malassezia globosa
29d1egla_
not modelled 19.6 40
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
30c1tinA_
not modelled 18.6 50
PDB header:serine protease inhibitor
Chain: A: PDB Molecule:trypsin inhibitor v;
PDBTitle: three-dimensional structure in solution of cucurbita maxima trypsin2 inhibitor-v determined by nmr spectroscopy
31c6mhqE_
not modelled 18.2 36
PDB header:membrane protein
Chain: E: PDB Molecule:gap junction alpha-3 protein, connexin-46;
PDBTitle: structure of connexin-46 intercellular gap junction channel at 3.42 angstrom resolution by cryoem
32c1njpT_
not modelled 18.0 23
PDB header:ribosome
Chain: T: PDB Molecule:general stress protein ctc;
PDBTitle: the crystal structure of the 50s large ribosomal subunit2 from deinococcus radiodurans complexed with a trna3 acceptor stem mimic (asm)
33c3j39M_
not modelled 16.6 38
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l14;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
34c1cqtI_
not modelled 15.8 35
PDB header:gene regulation/dna
Chain: I: PDB Molecule:pou domain, class 2, associating factor 1;
PDBTitle: crystal structure of a ternary complex containing an oca-b2 peptide, the oct-1 pou domain, and an octamer element
35c3jcuj_
not modelled 14.5 25
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
36d1rr7a_
not modelled 14.1 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Middle operon regulator, Mor
37c1rr7A_
not modelled 14.1 28
PDB header:transcription
Chain: A: PDB Molecule:middle operon regulator;
PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu
38c1u1iC_
not modelled 13.7 26
PDB header:isomerase
Chain: C: PDB Molecule:myo-inositol-1-phosphate synthase;
PDBTitle: myo-inositol phosphate synthase mips from a. fulgidus
39d1u1ia1
not modelled 13.7 33
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
40d2axtj1
not modelled 13.0 20
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
41c3a0hJ_
not modelled 13.0 20
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
42c1cqtJ_
not modelled 12.7 35
PDB header:gene regulation/dna
Chain: J: PDB Molecule:pou domain, class 2, associating factor 1;
PDBTitle: crystal structure of a ternary complex containing an oca-b2 peptide, the oct-1 pou domain, and an octamer element
43d3lria_
not modelled 12.6 36
Fold:Insulin-like
Superfamily:Insulin-like
Family:Insulin-like
44c5o9zE_
not modelled 12.4 71
PDB header:splicing
Chain: E: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
45c2oryA_
not modelled 12.4 32
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of m37 lipase
46c5sxpF_
not modelled 11.7 67
PDB header:signaling protein/ligase
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
47c1cirA_
not modelled 11.7 63
PDB header:serine protease inhibitor
Chain: A: PDB Molecule:chymotrypsin inhibitor 2;
PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)]
48c5sxpG_
not modelled 11.2 67
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
49c5ovmA_
not modelled 10.9 32
PDB header:chaperone
Chain: A: PDB Molecule:lipase chaperone;
PDBTitle: solution structure of lipase binding domain lid1 of foldase from2 pseudomonas aeruginosa
50c5xnmj_
not modelled 10.8 25
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
51c2mmbA_
not modelled 10.6 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein yp_001712342.1 from acinetobacter2 baumannii
52c6n52B_
not modelled 10.5 13
PDB header:membrane protein
Chain: B: PDB Molecule:metabotropic glutamate receptor 5;
PDBTitle: metabotropic glutamate receptor 5 apo form
53c2q5tA_
not modelled 10.4 33
PDB header:toxin
Chain: A: PDB Molecule:cholix toxin;
PDBTitle: full-length cholix toxin from vibrio cholerae
54c5zazA_
not modelled 10.2 26
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
55c1lj2D_
not modelled 9.7 27
PDB header:viral protein/ translation
Chain: D: PDB Molecule:eukaryotic protein synthesis initiation factor;
PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization
56c6igzJ_
not modelled 9.4 33
PDB header:plant protein
Chain: J: PDB Molecule:psaj;
PDBTitle: structure of psi-lhci
57c5ys3B_
not modelled 8.9 24
PDB header:transport protein
Chain: B: PDB Molecule:succinate-acetate permease;
PDBTitle: 1.8 angstrom crystal structure of succinate-acetate permease from2 citrobacter koseri
58c2lx0A_
not modelled 8.9 55
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
59c2qjkM_
not modelled 8.9 12
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome b;
PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin
60d2qam01
not modelled 8.4 20
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
61c2mwqA_
not modelled 8.3 57
PDB header:plant protein
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 3, chloroplastic;
PDBTitle: solution structure of psbq from spinacia oleracea
62c6mx7C_
not modelled 8.2 45
PDB header:virus
Chain: C: PDB Molecule:capsid;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus:2 genome-binding capsid n-terminal domain
63c6epcN_
not modelled 7.7 15
PDB header:hydrolase
Chain: N: PDB Molecule:26s proteasome non-atpase regulatory subunit 1;
PDBTitle: ground state 26s proteasome (gs2)
64c5fg0B_
not modelled 7.5 14
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase listerin;
PDBTitle: structure of the conserved yeast listerin (ltn1) n-terminal domain,2 monoclinic form
65c3j3v0_
not modelled 7.5 36
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l32;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
66c6hu9U_
not modelled 7.4 19
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
67c5mlc7_
not modelled 7.3 47
PDB header:ribosome
Chain: 7: PDB Molecule:psrp5alpha, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
68d1dc1a_
not modelled 7.2 32
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BsobI
69c5xfsA_
not modelled 7.1 26
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
70c1y4eA_
not modelled 7.1 57
PDB header:membrane protein
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: nmr structure of transmembrane segment iv of the nhe12 isoform of the na+/h+ exchanger
71c6o4mB_
not modelled 7.0 16
PDB header:toxin
Chain: B: PDB Molecule:melittin;
PDBTitle: racemic melittin
72c2mltB_
not modelled 7.0 16
PDB header:toxin (hemolytic polypeptide)
Chain: B: PDB Molecule:melittin;
PDBTitle: melittin
73c2mw6A_
not modelled 7.0 16
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: structure of the bee venom toxin melittin with [(c5h5)ru]+ fragment2 attached to the tryptophan residue
74c6o4mA_
not modelled 7.0 16
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: racemic melittin
75c6dstA_
not modelled 7.0 16
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: recombinant melittin
76c2mltA_
not modelled 7.0 16
PDB header:toxin (hemolytic polypeptide)
Chain: A: PDB Molecule:melittin;
PDBTitle: melittin
77c2g38A_
not modelled 6.9 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
78d2g38a1
not modelled 6.9 11
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PE
79c1pjmA_
not modelled 6.8 100
PDB header:protein transport
Chain: A: PDB Molecule:retinoblastoma-associated protein;
PDBTitle: mouse importin alpha-bipartite nls from human2 retinoblastoma protein complex
80c4b1yM_
not modelled 6.7 46
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-3 bound to g-actin
81c2mckA_
not modelled 6.7 44
PDB header:hydrolase
Chain: A: PDB Molecule:polyprotein;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for murine2 norovirus cr6 ns1/2 protein
82c5h1sg_
not modelled 6.6 54
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l4, chloroplastic;
PDBTitle: structure of the large subunit of the chloro-ribosome
83d2j0151
not modelled 6.6 50
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
84c5zghJ_
not modelled 6.5 25
PDB header:photosynthesis
Chain: J: PDB Molecule:psaj;
PDBTitle: cryo-em structure of the red algal psi-lhcr
85d2e74h1
not modelled 6.4 54
Fold:Single transmembrane helix
Superfamily:PetN subunit of the cytochrome b6f complex
Family:PetN subunit of the cytochrome b6f complex
86c5vnyA_
not modelled 6.4 63
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:lethal (2) giant discs 1, isoform b;
PDBTitle: crystal structure of dm14-3 domain of lgd
87c6e3yP_
not modelled 6.3 38
PDB header:signaling protein
Chain: P: PDB Molecule:calcitonin gene-related peptide 1;
PDBTitle: cryo-em structure of the active, gs-protein complexed, human cgrp2 receptor
88c4i7zH_
not modelled 6.3 54
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
89c4pv1H_
not modelled 6.3 54
PDB header:electron transport/inhibitor
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
90c2kncA_
not modelled 6.3 30
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
91c5wu5C_
not modelled 6.3 27
PDB header:transferase
Chain: C: PDB Molecule:speckle targeted pip5k1a-regulated poly(a) polymerase;
PDBTitle: crystal structure of apo human tut1, form iii
92c3pq1A_
not modelled 6.3 27
PDB header:transferase
Chain: A: PDB Molecule:poly(a) rna polymerase;
PDBTitle: crystal structure of human mitochondrial poly(a) polymerase (papd1)
93c6gwxA_
not modelled 6.2 75
PDB header:structural protein
Chain: A: PDB Molecule:optimised ppa-tyr;
PDBTitle: stabilising and understanding a miniprotein by rational design.
94c5f5uH_
not modelled 6.2 38
PDB header:splicing
Chain: H: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the snu23-prp38-mfap1(217-258) complex of2 chaetomium thermophilum
95c1z8yI_
not modelled 6.2 35
PDB header:virus
Chain: I: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
96c1z8yM_
not modelled 6.2 35
PDB header:virus
Chain: M: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
97c1z8yK_
not modelled 6.2 35
PDB header:virus
Chain: K: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
98c1z8yO_
not modelled 6.2 35
PDB header:virus
Chain: O: PDB Molecule:spike glycoprotein e1;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
99c2e75H_
not modelled 6.2 54
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below