Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3732_(-)_4183112_4184170
DateFri Aug 9 18:20:43 BST 2019
Unique Job ID889f8b4b3e16579f
SequenceMAVLPACRLG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.969 Y:30.398 Z:35.576
Model (left) based on template d2gk3a1
Top template information
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
Confidence and coverage
Confidence: 57.9% Coverage: 14%
51 residues ( 14% of your sequence) have been modelled with 57.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2gk3a1



57.9 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
2c2z0lA_



57.3 32
PDB header:replication
Chain: A: PDB Molecule:early antigen protein d;
PDBTitle: crystal structure of ebv-dna polymerase accessory protein2 bmrf1
3c3hslX_



56.7 26
PDB header:replication
Chain: X: PDB Molecule:orf59;
PDBTitle: the crystal structure of pf-8, the dna polymerase accessory subunit2 from kaposi's sarcoma-associated herpesvirus
4c2arfA_



46.5 39
PDB header:hydrolase
Chain: A: PDB Molecule:wilson disease atpase;
PDBTitle: solution structure of the wilson atpase n-domain in the2 presence of atp
5d1t0ba_



39.9 12
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:ThuA-like
6c3rhtB_



39.1 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
7c4ifsA_



38.2 7
PDB header:transcription, replication
Chain: A: PDB Molecule:fact complex subunit ssrp1;
PDBTitle: crystal structure of the hssrp1 middle domain
8c2kngA_



31.4 16
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: solution structure of c-domain of lsr2
9d1q7ra_



29.7 20
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
10d2dl6a1



28.5 27
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
11d2nv0a1



27.5 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
12d2axtj1



27.2 21
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
13c3a0hJ_



27.2 21
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
14c4e5vA_



27.1 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thua-like protein;
PDBTitle: crystal structure of a putative thua-like protein (parmer_02418) from2 parabacteroides merdae atcc 43184 at 1.75 a resolution
15c5lbkA_



24.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase paa2, chloroplastic;
PDBTitle: crystal structure of the n-domain of hma8, a copper-transporting p-2 type atpase
16c5vidG_



23.3 23
PDB header:toxin
Chain: G: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
17c5vidI_



23.3 23
PDB header:toxin
Chain: I: PDB Molecule:bot.0671.2;
PDBTitle: receptor binding domain of bont/b in complex with mini-protein binder2 bot.0671.2
18d1r2aa_



21.2 24
Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
19c3jcuj_



20.9 26
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
20c5xnmj_



20.3 26
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
21c1wwuA_



not modelled 20.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein flj21935;
PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935
22c2issF_



not modelled 20.0 16
PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
23c3mi6A_



not modelled 19.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
24d2qmsa1



not modelled 18.1 26
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
25c5kzoA_



not modelled 18.1 31
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
26c5hhaB_



not modelled 17.5 11
PDB header:hydrolase
Chain: B: PDB Molecule:pvdo;
PDBTitle: structure of pvdo from pseudomonas aeruginosa
27c2ckaA_



not modelled 16.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
28d2ckaa1



not modelled 16.6 24
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
29d1qf6a1



not modelled 16.2 15
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
30c2e8mA_



not modelled 15.9 25
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
31c5vymB_



not modelled 15.8 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase bgab;
PDBTitle: crystal structure of beta-galactosidase from bifidobacterium2 adolescentis
32d2auwa1



not modelled 15.3 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
33c2koyA_



not modelled 14.5 28
PDB header:metal transport
Chain: A: PDB Molecule:copper-transporting atpase 2;
PDBTitle: structure of the e1064a mutant of the n-domain of wilson disease2 associated protein
34c4jqsC_



not modelled 14.0 20
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative thua-like protein (bacuni_01602) from2 bacteroides uniformis atcc 8492 at 2.30 a resolution
35c6eeqA_



not modelled 13.4 17
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxyphenylacetaldehyde synthase;
PDBTitle: crystal structure of rhodiola rosea 4-hydroxyphenylacetaldehyde2 synthase
36c2lowA_



not modelled 13.1 19
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
37c4iapB_



not modelled 13.1 33
PDB header:lipid binding protein/ hydrorase
Chain: B: PDB Molecule:oxysterol-binding protein homolog 3,endolysin,oxysterol-
PDBTitle: crystal structure of ph domain of osh3 from saccharomyces cerevisiae
38c2lnvA_



not modelled 12.8 10
PDB header:transport protein
Chain: A: PDB Molecule:general secretion pathway protein c;
PDBTitle: solution structure of gspc-hr of typeii secretion system
39d1f44a1



not modelled 12.6 17
Fold:SAM domain-like
Superfamily:lambda integrase-like, N-terminal domain
Family:lambda integrase-like, N-terminal domain
40c2kmvA_



not modelled 12.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the nucleotide binding domain of the2 human menkes protein in the atp-free form
41c4divH_



not modelled 11.6 24
PDB header:viral protein
Chain: H: PDB Molecule:orf48;
PDBTitle: the structure of a 1.8 mda viral genome injection device suggests2 alternative infection mechanisms
42d1nyra1



not modelled 11.4 14
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Anticodon-binding domain of Class II aaRS
43c6a4tB_



not modelled 11.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase e;
PDBTitle: crystal structure of peptidase e from deinococcus radiodurans r1
44d1rh6a_



not modelled 10.8 30
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
45c3l4eA_



not modelled 10.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
46c3sozC_



not modelled 10.3 20
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:cytoplasmic protein stm1381;
PDBTitle: cytoplasmic protein stm1381 from salmonella typhimurium lt2
47c4zdtB_



not modelled 10.2 21
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: crystal structure of the ring finger domain of slx1 in complex with2 the c-terminal domain of slx4
48c2zf9D_



not modelled 10.2 14
PDB header:structural protein
Chain: D: PDB Molecule:scae cell-surface anchored scaffoldin protein;
PDBTitle: crystal structure of a type iii cohesin module from the cellulosomal2 scae cell-surface anchoring scaffoldin of ruminococcus flavefaciens
49c2rvfA_



not modelled 9.6 14
PDB header:signaling protein
Chain: A: PDB Molecule:predicted protein;
PDBTitle: solution nmr structure of monosiga brevicollis crk/crkl homolog2 (crka1) sh2 domain
50d1y7qa1



not modelled 9.5 7
Fold:Acyl carrier protein-like
Superfamily:Retrovirus capsid dimerization domain-like
Family:SCAN domain
51c2n2aA_



not modelled 9.4 28
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
52c4gf4A_



not modelled 9.1 47
PDB header:transport protein
Chain: A: PDB Molecule:porin b;
PDBTitle: low ph structure of pseudomonas putida oprb
53c3qxyA_



not modelled 9.1 20
PDB header:transferase
Chain: A: PDB Molecule:n-lysine methyltransferase setd6;
PDBTitle: human setd6 in complex with rela lys310
54d1lt7a_



not modelled 8.7 25
Fold:TIM beta/alpha-barrel
Superfamily:Homocysteine S-methyltransferase
Family:Homocysteine S-methyltransferase
55d1pm6a_



not modelled 8.4 30
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
56c4rwwB_



not modelled 8.2 13
PDB header:protein binding
Chain: B: PDB Molecule:lmo2692 protein;
PDBTitle: crystal structure of l. monocytogenes psta in complex with cyclic-di-2 amp
57c2momB_



not modelled 8.2 10
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
58c2momC_



not modelled 8.2 10
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
59d2d9ia1



not modelled 8.2 14
Fold:IF3-like
Superfamily:SMR domain-like
Family:Smr domain
60d2obba1



not modelled 8.1 11
Fold:HAD-like
Superfamily:HAD-like
Family:BT0820-like
61d1ou9a_



not modelled 7.8 27
Fold:SspB-like
Superfamily:SspB-like
Family:Stringent starvation protein B, SspB
62c2auwB_



not modelled 7.7 19
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
63d1wu2a1



not modelled 7.6 13
Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
64c4rleA_



not modelled 7.2 17
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yaaq;
PDBTitle: crystal structure of the c-di-amp binding pii-like protein dara
65c5fr7B_



not modelled 7.1 33
PDB header:signaling protein
Chain: B: PDB Molecule:amyr;
PDBTitle: erwinia amylovora amyr amylovoran repressor, a member of the ybjn2 protein family
66c5z34A_



not modelled 7.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: the structure of a chitin deacetylase from bombyx mori provide the2 first insight into insect chitin deacetylation mechanism
67d1t1ea2



not modelled 7.0 11
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
68c2ipxA_



not modelled 7.0 14
PDB header:transferase
Chain: A: PDB Molecule:rrna 2'-o-methyltransferase fibrillarin;
PDBTitle: human fibrillarin
69c4fnrB_



not modelled 6.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase agaa;
PDBTitle: crystal structure of gh36 alpha-galactosidase agaa from geobacillus2 stearothermophilus
70d1kwga1



not modelled 6.9 17
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
71c2xn1B_



not modelled 6.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
72d1un8a4



not modelled 6.8 21
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
73c4wk1A_



not modelled 6.7 17
PDB header:signaling protein
Chain: A: PDB Molecule:psta;
PDBTitle: crystal structure of staphylococcus aureus psta in complex with c-di-2 amp
74c2shpA_



not modelled 6.7 19
PDB header:tyrosine phosphatase
Chain: A: PDB Molecule:shp-2;
PDBTitle: tyrosine phosphatase shp-2
75c2k4zA_



not modelled 6.6 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dsrr;
PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5
76d1nrva_



not modelled 6.5 19
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
77c5h77B_



not modelled 6.5 25
PDB header:signaling protein, immune system
Chain: B: PDB Molecule:camp-dependent protein kinase type ii-alpha regulatory
PDBTitle: crystal structure of the pka-protein a fusion protein
78d2hwna1



not modelled 6.5 27
Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
79d1dcja_



not modelled 6.4 10
Fold:IF3-like
Superfamily:SirA-like
Family:SirA-like
80d1y1oa_



not modelled 6.4 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:RecU-like
81d1y4ja1



not modelled 6.4 11
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Sulfatase-modifying factor-like
82c1y1oC_



not modelled 6.4 18
PDB header:recombination
Chain: C: PDB Molecule:penicillin-binding protein-related factor a;
PDBTitle: x-ray crystal structure of penicillin-binding protein-2 related factor a from bacillus stearothermophilus
83d2bu1a1



not modelled 6.3 22
Fold:RNA bacteriophage capsid protein
Superfamily:RNA bacteriophage capsid protein
Family:RNA bacteriophage capsid protein
84c3m05A_



not modelled 6.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pepe_1480;
PDBTitle: the crystal structure of a functionally unknown protein pepe_1480 from2 pediococcus pentosaceus atcc 25745
85c2kcuA_



not modelled 6.2 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ctr107;
PDBTitle: nmr solution structure of an uncharacterized protein from chlorobium2 tepidum. northeast structural genomics target ctr107
86c4ce4l_



not modelled 6.0 25
PDB header:ribosome
Chain: L: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
87c1rznB_



not modelled 5.9 18
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination protein u;
PDBTitle: crystal structure of penicillin-binding protein-related2 factor a from bacillus subtilis.
88d1oi2a_



not modelled 5.8 14
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
89d2v0ea1



not modelled 5.8 27
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
90c2yfnA_



not modelled 5.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
91c2vkcA_



not modelled 5.8 6
PDB header:hydrolase
Chain: A: PDB Molecule:nedd4-binding protein 2;
PDBTitle: solution structure of the b3bp smr domain
92d1bpoa1



not modelled 5.8 16
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Clathrin heavy-chain linker domain
93c2w56B_



not modelled 5.8 17
PDB header:unknown function
Chain: B: PDB Molecule:vc0508;
PDBTitle: structure of the hypothetical protein vc0508 from vibrio cholerae2 vsp-ii pathogenicity island
94d2essa1



not modelled 5.7 15
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:Acyl-ACP thioesterase-like
95c3icfB_



not modelled 5.7 13
PDB header:hydrolase
Chain: B: PDB Molecule:serine/threonine-protein phosphatase t;
PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5
96d1evsa_



not modelled 5.7 55
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Long-chain cytokines
97c5svtA_



not modelled 5.6 20
PDB header:membrane protein
Chain: A: PDB Molecule:p2x purinoceptor 3;
PDBTitle: anomalous cs+ signal reveals the site of na+ ion entry to the channel2 pore of the human p2x3 ion channel through the extracellular3 fenestrations
98c6eemB_



not modelled 5.6 12
PDB header:lyase
Chain: B: PDB Molecule:tyrosine/dopa decarboxylase;
PDBTitle: crystal structure of papaver somniferum tyrosine decarboxylase in2 complex with l-tyrosine
99c2iu6B_



not modelled 5.5 16
PDB header:transferase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: regulation of the dha operon of lactococcus lactis

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Transmembrane helix prediction 

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