Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3735_(-)_4186267_4186755
DateFri Aug 9 18:20:43 BST 2019
Unique Job ID13cea117bf89a3b9
SequenceMSLAWDVVSV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.267 Y:30.492 Z:42.398
Model (left) based on template c2ekmC_
Top template information
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein st1511;
PDBTitle: structure of st1219 protein from sulfolobus tokodaii
Confidence and coverage
Confidence:100.0% Coverage: 98%
159 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ekmC_
100.0 58
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein st1511;
PDBTitle: structure of st1219 protein from sulfolobus tokodaii
2c2gl0A_
100.0 55
PDB header:transferase
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: structure of pae2307 in complex with adenosine
3d1vgga_
100.0 58
Fold:Ta1353-like
Superfamily:Ta1353-like
Family:Ta1353-like
4c2d16B_
100.0 45
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph1918;
PDBTitle: crystal structure of ph1918 protein from pyrococcus horikoshii ot3
5d1rlha_
100.0 46
Fold:Ta1353-like
Superfamily:Ta1353-like
Family:Ta1353-like
6c4eacC_
69.5 26
PDB header:lyase
Chain: C: PDB Molecule:mannonate dehydratase;
PDBTitle: crystal structure of mannonate dehydratase from escherichia coli2 strain k12
7c4lj2A_
49.2 27
PDB header:lyase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from acinetobacter baumannii2 at 3.15a resolution
8c1ypxA_
46.7 30
PDB header:transferase
Chain: A: PDB Molecule:putative vitamin-b12 independent methionine synthase family
PDBTitle: crystal structure of the putative vitamin-b12 independent methionine2 synthase from listeria monocytogenes, northeast structural genomics3 target lmr13
9c3bdkB_
41.3 21
PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
10c4h9kA_
32.9 56
PDB header:hydrolase
Chain: A: PDB Molecule:hog cholera virus;
PDBTitle: crystal structure of cleavage site mutant of npro of classical swine2 fever virus.
11c5o6uB_
31.0 29
PDB header:antiviral protein
Chain: B: PDB Molecule:crispr-associated protein, csy4 family;
PDBTitle: structure of the cascade-i-fv r-loop complex from shewanella2 putrefaciens
12c2ly2A_
30.7 24
PDB header:rna binding protein
Chain: A: PDB Molecule:tudor domain-containing protein 7;
PDBTitle: nmr structure of the second and third lotus domains of tudor domain-2 containing protein 7 (nmr ensemble overlay for lotus #3)
13c2xlkB_
28.2 33
PDB header:hydrolase/rna
Chain: B: PDB Molecule:csy4 endoribonuclease;
PDBTitle: crystal structure of the csy4-crrna complex, orthorhombic form
14c3fpnA_
27.9 31
PDB header:dna binding protein
Chain: A: PDB Molecule:geobacillus stearothermophilus uvra interaction domain;
PDBTitle: crystal structure of uvra-uvrb interaction domains
15c3zfnA_
27.7 50
PDB header:hydrolase
Chain: A: PDB Molecule:n-terminal protease npro;
PDBTitle: crystal structure of product-like, processed n-terminal protease npro
16c5ofbB_
27.5 36
PDB header:nuclear protein
Chain: B: PDB Molecule:morc family cw-type zinc finger protein 2;
PDBTitle: crystal structure of human morc2 (residues 1-603) with spinal muscular2 atrophy mutation s87l
17d1o6aa_
26.3 28
Fold:Surface presentation of antigens (SPOA)
Superfamily:Surface presentation of antigens (SPOA)
Family:Surface presentation of antigens (SPOA)
18c1t7lA_
25.9 29
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of cobalamin-independent methionine synthase from t.2 maritima
19c3l7sA_
24.5 29
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of mete coordinated with zinc from streptococcus2 mutans
20d1u1ha2
23.6 33
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Cobalamin-independent methionine synthase
21c5xrwA_
not modelled 23.4 21
PDB header:motor protein
Chain: A: PDB Molecule:flin;
PDBTitle: crystal structure of flagellar motor switch complex from h. pylori
22d1zjca1
not modelled 21.2 18
Fold:Thermophilic metalloprotease-like
Superfamily:Thermophilic metalloprotease-like
Family:Thermophilic metalloprotease (M29)
23c3mx7A_
not modelled 19.5 45
PDB header:apoptosis
Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1;
PDBTitle: crystal structure analysis of human faim-ntd
24d1u1ha1
not modelled 15.1 23
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Cobalamin-independent methionine synthase
25c2nq5A_
not modelled 14.4 29
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of methyltransferase from streptococcus mutans
26d1tz9a_
not modelled 13.7 22
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:UxuA-like
27c2mmtA_
not modelled 13.5 44
PDB header:antibiotic
Chain: A: PDB Molecule:microcin j25 rgdf mutant;
PDBTitle: lasso peptide-based integrin inhibitor: microcin j25 variant with rgdf2 substitution of gly12-ile13-gly14-thr15
28c1y96C_
not modelled 12.8 25
PDB header:rna binding protein
Chain: C: PDB Molecule:gem-associated protein 6;
PDBTitle: crystal structure of the gemin6/gemin7 heterodimer from the2 human smn complex
29c2xr1B_
not modelled 11.4 24
PDB header:hydrolase
Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd
PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
30c2xdqB_
not modelled 11.1 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
31c3cxjB_
not modelled 11.0 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus
32c3af5A_
not modelled 10.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ph1404;
PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii
33c2xr1A_
not modelled 9.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd
PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
34c2ycbA_
not modelled 9.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor;
PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus
35c3rpdB_
not modelled 9.2 27
PDB header:transferase
Chain: B: PDB Molecule:methionine synthase (b12-independent);
PDBTitle: the structure of a b12-independent methionine synthase from shewanella2 sp. w3-18-1 in complex with selenomethionine.
36c4v02C_
not modelled 9.2 18
PDB header:cell cycle
Chain: C: PDB Molecule:probable septum site-determining protein minc;
PDBTitle: minc:mind cell division protein complex, aquifex aeolicus
37c2yqrA_
not modelled 9.1 20
PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0907 protein;
PDBTitle: solution structure of the kh domain in kiaa0907 protein
38c3ievA_
not modelled 9.0 36
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
39c3r89A_
not modelled 7.6 14
PDB header:lyase
Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase;
PDBTitle: crystal structure of orotidine 5-phosphate decarboxylase from2 anaerococcus prevotii dsm 20548
40c3fioB_
not modelled 7.5 36
PDB header:nucleotide binding protein, metal bindin
Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein
PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain
41c3rv1B_
not modelled 7.5 22
PDB header:rna binding protein
Chain: B: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of the n-terminal and rnase iii domains of k.2 polysporus dcr1 e224q mutant
42d1ec6a_
not modelled 7.3 17
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
43d1dt4a_
not modelled 7.3 21
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
44d1gsoa2
not modelled 7.1 28
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
45c3h0gH_
not modelled 6.8 21
PDB header:transcription
Chain: H: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc3;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
46d1fc4a_
not modelled 6.7 10
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
47c5g5rA_
not modelled 6.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:site-2 protease;
PDBTitle: cbs domain tandem of site-2 protease from archaeoglobus fulgidus in2 complex with llama nanobody - apo form
48d1kwga1
not modelled 6.5 13
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
49c4zfjB_
not modelled 6.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase egtc;
PDBTitle: ergothioneine-biosynthetic ntn hydrolase egtc, apo form
50c2n5jA_
not modelled 6.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: regnase-1 n-terminal domain
51d1x87a_
not modelled 6.2 41
Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
52c3uepB_
not modelled 6.2 17
PDB header:protein transport
Chain: B: PDB Molecule:yscq-c, type iii secretion protein;
PDBTitle: crystal structure of yscq-c from yersinia pseudotuberculosis
53c3mtqA_
not modelled 6.0 15
PDB header:transferase
Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar
PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution
54d2ffca1
not modelled 5.8 11
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Decarboxylase
55c5lj3G_
not modelled 5.7 17
PDB header:splicing
Chain: G: PDB Molecule:isy1;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
56c2ipcB_
not modelled 5.7 29
PDB header:transport protein
Chain: B: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer
57d1viga_
not modelled 5.7 24
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
58c3lyvF_
not modelled 5.7 58
PDB header:chaperone
Chain: F: PDB Molecule:ribosome-associated factor y;
PDBTitle: crystal structure of a domain of ribosome-associated factor y from2 streptococcus pyogenes serotype m6. northeast structural genomics3 consortium target id dr64a
59d1twfh_
not modelled 5.6 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RNA polymerase subunit RBP8
60d2q66a2
not modelled 5.6 29
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
61c5z9aB_
not modelled 5.5 31
PDB header:lyase
Chain: B: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from pseudomonas aeruginosa
62c4lvpA_
not modelled 5.5 32
PDB header:transport protein
Chain: A: PDB Molecule:intraflagellar transport protein 81;
PDBTitle: crystal structure of ift81 n-terminal domain
63c1yrlD_
not modelled 5.4 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: escherichia coli ketol-acid reductoisomerase
64c4yxaB_
not modelled 5.4 14
PDB header:protein transport
Chain: B: PDB Molecule:surface presentation of antigens protein spao;
PDBTitle: complex of spao(spoa1,2 semet) and orgb(apar)::t4lysozyme fusion2 protein
65c3rv0C_
not modelled 5.4 42
PDB header:rna binding protein
Chain: C: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
66c5ix1A_
not modelled 5.3 28
PDB header:transcription
Chain: A: PDB Molecule:morc family cw-type zinc finger protein 3;
PDBTitle: crystal structure of mouse morc3 atpase-cw cassette in complex with2 amppnp and h3k4me3 peptide
67c3q91D_
not modelled 5.3 33
PDB header:hydrolase
Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase;
PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14)
68c3aerB_
not modelled 5.3 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
69c4dfcB_
not modelled 5.2 24
PDB header:hydrolase/dna binding protein
Chain: B: PDB Molecule:uvrabc system protein a;
PDBTitle: core uvra/trcf complex
70c5lahA_
not modelled 5.2 63
PDB header:toxin
Chain: A: PDB Molecule:tau-anmtx ueq 12-1;
PDBTitle: nmr structure of the sea anemone peptide tau-anmtx ueq 12-1 with an2 uncommon fold
71c3auyB_
not modelled 5.2 25
PDB header:recombination
Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase;
PDBTitle: crystal structure of rad50 bound to adp
72c2hh3A_
not modelled 5.1 21
PDB header:rna binding protein
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: solution structure of the third kh domain of ksrp

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