Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3737_(-)_4187877_4189466
DateFri Aug 9 18:20:43 BST 2019
Unique Job IDd00815b4a8a14bcc
SequenceMDQDRSDNTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.399 Y:17.972 Z:24.038
Model (left) based on template d2pp4a1
Top template information
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
Confidence and coverage
Confidence: 79.7% Coverage: 6%
33 residues ( 6% of your sequence) have been modelled with 79.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2pp4a1



79.7 18
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
2c2y0sJ_



48.2 16
PDB header:transferase
Chain: J: PDB Molecule:rna polymerase subunit 13;
PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in p21 space2 group
3c2y0sQ_



48.2 16
PDB header:transferase
Chain: Q: PDB Molecule:rna polymerase subunit 13;
PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in p21 space2 group
4c4b1pJ_



47.6 18
PDB header:transferase/dna
Chain: J: PDB Molecule:rna polymerase subunit 13;
PDBTitle: archaeal rnap-dna binary complex at 4.32ang
5c4aybQ_



46.4 18
PDB header:transferase
Chain: Q: PDB Molecule:dna-directed rna polymerase;
PDBTitle: rnap at 3.2ang
6c5xj6A_



43.8 18
PDB header:transferase
Chain: A: PDB Molecule:glycerol-3-phosphate acyltransferase;
PDBTitle: crystal structure of plsy (ygih), an integral membrane glycerol 3-2 phosphate acyltransferase - the glycerol 3-phosphate form
7d1vp7a_



41.6 31
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
8c5x3xm_



41.2 15
PDB header:transport protein
Chain: M: PDB Molecule:cobalt transport protein cbim;
PDBTitle: 2.8a resolution structure of a cobalt energy-coupling factor2 transporter-cbimqo
9c5a40C_



40.6 17
PDB header:transport protein
Chain: C: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
10c3hkzY_



38.0 11
PDB header:transferase
Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
11d1vp7b_



34.7 31
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
12c3hkzZ_



33.6 11
PDB header:transferase
Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
13c4m5bA_



32.4 18
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
14c4m5cA_



32.4 18
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
15c4b1oQ_



32.2 18
PDB header:transferase/dna
Chain: Q: PDB Molecule:rna polymerase subunit 13;
PDBTitle: archaeal rnap-dna binary complex at 4.32ang
16c2jvdA_



30.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: solution nmr structure of the folded n-terminal fragment of2 upf0291 protein ynzc from bacillus subtilis. northeast3 structural genomics target sr384-1-46
17c3bhpA_



27.3 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384
18c5n9qA_



27.0 3
PDB header:transferase
Chain: A: PDB Molecule:inactive poly [adp-ribose] polymerase rcd1;
PDBTitle: structure of a. thaliana rcd1(468-567)
19d2hepa1



26.0 15
Fold:Long alpha-hairpin
Superfamily:YnzC-like
Family:YznC-like
20c2hepA_



26.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: solution nmr structure of the upf0291 protein ynzc from2 bacillus subtilis. northeast structural genomics target3 sr384.
21c2wb1Q_



not modelled 23.1 16
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
22d2p6va1



not modelled 22.6 15
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
23c2wb1J_



not modelled 22.3 17
PDB header:transcription
Chain: J: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
24c4ezdB_



not modelled 22.1 14
PDB header:transport protein
Chain: B: PDB Molecule:urea transporter 1;
PDBTitle: crystal structure of the ut-b urea transporter from bos taurus bound2 to selenourea
25c2waqQ_



not modelled 21.8 14
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-directed rna2 polymerase
26c5ecjA_



not modelled 20.3 18
PDB header:gene regulation/transcription
Chain: A: PDB Molecule:pr domain zinc finger protein 14,protein cbfa2t2;
PDBTitle: crystal structure of monobody mb(s4) bound to prdm14 in complex with2 mtgr1
27c4ejyA_



not modelled 17.4 8
PDB header:hydrolase/dna
Chain: A: PDB Molecule:3-methyladenine dna glycosylase;
PDBTitle: structure of mbogg1 in complex with high affinity dna ligand
28c1sfeA_



not modelled 17.2 24
PDB header:dna-binding protein
Chain: A: PDB Molecule:ada o6-methylguanine-dna methyltransferase;
PDBTitle: ada o6-methylguanine-dna methyltransferase from escherichia coli
29c6d0nA_



not modelled 16.3 21
PDB header:transport protein
Chain: A: PDB Molecule:clc-type fluoride/proton antiporter;
PDBTitle: crystal structure of a clc-type fluoride/proton antiporter, v319g2 mutant
30c5gasN_



not modelled 15.8 15
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
31d1vd6a1



not modelled 14.5 15
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Glycerophosphoryl diester phosphodiesterase
32c2ql8A_



not modelled 14.2 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative redox protein;
PDBTitle: crystal structure of a putative redox protein (lsei_0423) from2 lactobacillus casei atcc 334 at 1.50 a resolution
33c4bhcA_



not modelled 13.8 36
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of the m. tuberculosis o6-methylguanine2 methyltransferase r37l variant
34d1ml8a_



not modelled 12.9 13
Fold:OsmC-like
Superfamily:OsmC-like
Family:YhfA-like
35d1sfea1



not modelled 12.3 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
36d2jf2a1



not modelled 12.3 14
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
37c5mmjm_



not modelled 12.2 33
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
38c3zeyM_



not modelled 12.1 38
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
39c1t39A_



not modelled 12.0 36
PDB header:transferase/dna
Chain: A: PDB Molecule:methylated-dna--protein-cysteine
PDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
40d1o1za_



not modelled 12.0 14
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Glycerophosphoryl diester phosphodiesterase
41c3cjeA_



not modelled 12.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:osmc-like protein;
PDBTitle: crystal structure of an osmc-like hydroperoxide resistance protein2 (jann_2040) from jannaschia sp. ccs1 at 1.70 a resolution
42c6o58C_



not modelled 11.8 21
PDB header:transport protein
Chain: C: PDB Molecule:calcium uniporter protein, mitochondrial;
PDBTitle: human mcu-emre complex, dimer of channel
43c2xznM_



not modelled 11.8 42
PDB header:ribosome
Chain: M: PDB Molecule:rps18e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
44c3bbnM_



not modelled 11.4 38
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein s13;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
45c1v1cA_



not modelled 11.2 39
PDB header:sh3-domain
Chain: A: PDB Molecule:obscurin;
PDBTitle: solution structure of the sh3 domain of obscurin
46c1powA_



not modelled 11.2 5
PDB header:oxidoreductase(oxygen as acceptor)
Chain: A: PDB Molecule:pyruvate oxidase;
PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum
47d1uspa_



not modelled 11.2 17
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
48c2bjoA_



not modelled 11.0 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:organic hydroperoxide resistance protein ohrb;
PDBTitle: crystal structure of the organic hydroperoxide resistance2 protein ohrb of bacillus subtilis
49c2kimA_



not modelled 10.6 32
PDB header:transferase
Chain: A: PDB Molecule:o6-methylguanine-dna methyltransferase;
PDBTitle: 1.7-mm microcryoprobe solution nmr structure of an o6-methylguanine2 dna methyltransferase family protein from vibrio parahaemolyticus.3 northeast structural genomics consortium target vpr247.
50d2pn2a1



not modelled 10.4 7
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
51c6mjnC_



not modelled 10.2 7
PDB header:oxidoreductase
Chain: C: PDB Molecule:organic hydroperoxide resistance protein;
PDBTitle: crystal structure of an organic hydroperoxide resistance protein osmc,2 predicted redox protein, regulator of sulfide bond formation from3 legionella pneumophila
52c4mh4B_



not modelled 10.1 10
PDB header:protein binding
Chain: B: PDB Molecule:osmc-like protein;
PDBTitle: crystal structure of osmc-like protein from burkholderia cenocepacia2 j2315
53c4nozA_



not modelled 10.1 13
PDB header:protein binding
Chain: A: PDB Molecule:organic hydroperoxide resistance protein;
PDBTitle: crystal structure of an organic hydroperoxide resistance protein from2 burkholderia cenocepacia
54c3ipdB_



not modelled 10.0 13
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
55c5jxxC_



not modelled 9.8 19
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: crystal structure of udp-n-acetylglucosamine o-acyltransferase (lpxa)2 from moraxella catarrhalis rh4.
56c3iz6M_



not modelled 9.8 42
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
57c3eerA_



not modelled 9.6 0
PDB header:oxidoreductase
Chain: A: PDB Molecule:organic hydroperoxide resistance protein, putative;
PDBTitle: high resolution structure of putative organic hydroperoxide resistance2 protein from vibrio cholerae o1 biovar eltor str. n16961
58c3j20O_



not modelled 9.6 38
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
59c2qdqA_



not modelled 9.5 6
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: crystal structure of the talin dimerisation domain
60d1n2fa_



not modelled 9.4 7
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
61c4b6at_



not modelled 9.0 15
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l21-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
62d1lqla_



not modelled 8.8 10
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
63c1lqlE_



not modelled 8.8 10
PDB header:unknown function
Chain: E: PDB Molecule:osmotical inducible protein c like family;
PDBTitle: crystal structure of osmc like protein from mycoplasma2 pneumoniae
64c3p5nA_



not modelled 8.6 9
PDB header:transport protein
Chain: A: PDB Molecule:riboflavin uptake protein;
PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter
65c4xk2A_



not modelled 8.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldo/keto reductase;
PDBTitle: crystal structure of aldo-keto reductase from polaromonas sp. js666
66c4uw8F_



not modelled 8.4 26
PDB header:viral protein
Chain: F: PDB Molecule:l-shaped tail fiber protein;
PDBTitle: structure of the carboxy-terminal domain of the bacteriophage t5 l-2 shaped tail fiber with its intra-molecular chaperone domain
67c4lh9A_



not modelled 8.2 31
PDB header:transcription
Chain: A: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the refolded hood domain (asp256-gly295) of hetr
68c5mkbF_



not modelled 7.9 13
PDB header:sugar binding protein
Chain: F: PDB Molecule:male1;
PDBTitle: maltodextrin binding protein male1 from l. casei bl23 without ligand
69c2zkqm_



not modelled 7.8 42
PDB header:ribosomal protein/rna
Chain: M: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
70c1cq0A_



not modelled 7.6 26
PDB header:de novo protein
Chain: A: PDB Molecule:protein (new hypothalamic neuropeptide/orexin-b28);
PDBTitle: solution structure of a human hypocretin-2/orexin-b'solution structure2 of a human hypocretin-2/orexin-b '
71d1qd1a2



not modelled 7.4 19
Fold:Ferredoxin-like
Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase.
72c2egtA_



not modelled 7.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein aq_1549;
PDBTitle: crystal structure of hypothetical protein (aq1549) from aquifex2 aeolicus
73c3vxbA_



not modelled 7.1 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar-binding lipoprotein;
PDBTitle: crystal structure of bxle from streptomyces thermoviolaceus opc-520
74d2ez9a1



not modelled 6.9 5
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
75d1q8la_



not modelled 6.8 8
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
76c5o5jM_



not modelled 6.8 39
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s13;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
77c2i6kA_



not modelled 6.8 13
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1;
PDBTitle: crystal structure of human type i ipp isomerase complexed with a2 substrate analog
78c3c6cA_



not modelled 6.7 10
PDB header:hydrolase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution
79c3no5C_



not modelled 6.7 13
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf849 domain containing protein2 (reut_a1631) from ralstonia eutropha jmp134 at 1.90 a resolution
80c2otdC_



not modelled 6.6 15
PDB header:hydrolase
Chain: C: PDB Molecule:glycerophosphodiester phosphodiesterase;
PDBTitle: the crystal structure of the glycerophosphodiester phosphodiesterase2 from shigella flexneri 2a
81c6dt0D_



not modelled 6.6 18
PDB header:transport protein
Chain: D: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of a mitochondrial calcium uniporter
82d2gy9m1



not modelled 6.6 43
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
83c6nplA_



not modelled 6.6 10
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
84d1zaia1



not modelled 6.5 22
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
85c4ox3A_



not modelled 6.5 9
PDB header:hydrolase
Chain: A: PDB Molecule:putative carboxypeptidase yodj;
PDBTitle: structure of the ldcb ld-carboxypeptidase reveals the molecular basis2 of peptidoglycan recognition
86c3e02A_



not modelled 6.4 10
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf849;
PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution
87d1vlaa_



not modelled 6.4 13
Fold:OsmC-like
Superfamily:OsmC-like
Family:YhfA-like
88c4qi6A_



not modelled 6.4 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:cellobiose dehydrogenase;
PDBTitle: cellobiose dehydrogenase from myriococcum thermophilum, mtcdh
89c6d80A_



not modelled 6.4 15
PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter from n.2 fischeri bound to saposin
90c2y7eA_



not modelled 6.3 23
PDB header:lyase
Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme;
PDBTitle: crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme2 (kce) from candidatus cloacamonas acidaminovorans (tetragonal form)
91c5zmyF_



not modelled 6.1 3
PDB header:hydrolase
Chain: F: PDB Molecule:cis-epoxysuccinate hydrolase;
PDBTitle: crystal structure of a cis-epoxysuccinate hydrolase producing d(-)-2 tartaric acids
92d2onfa1



not modelled 6.1 13
Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
93c1x4pA_



not modelled 6.1 25
PDB header:rna binding protein
Chain: A: PDB Molecule:putative splicing factor, arginine/serine-rich
PDBTitle: solution structure of surp domain in sfrs14 protei
94d1fuia1



not modelled 6.1 24
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:FucI/AraA C-terminal domain-like
Family:L-fucose isomerase, C-terminal domain
95c3lotC_



not modelled 6.1 13
PDB header:structure genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (np_070038.1) from2 archaeoglobus fulgidus at 1.89 a resolution
96c5x5yF_



not modelled 6.0 12
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
97c5xyiS_



not modelled 5.9 43
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s13p/s18e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
98c3i10A_



not modelled 5.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycerophosphoryl diester phosphodiesterase;
PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (np_812074.1) from bacteroides thetaiotaomicron3 vpi-5482 at 1.35 a resolution
99c2j6yB_



not modelled 5.7 4
PDB header:hydrolase
Chain: B: PDB Molecule:phosphoserine phosphatase rsbu;
PDBTitle: structural and functional characterisation of partner switching2 regulating the environmental stress response in bacillus subtilis

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