Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3739c_(PPE67)_4190462_4190695
DateFri Aug 9 18:20:43 BST 2019
Unique Job IDa96ad2397f5bc5f6
SequenceMTAPIWFASP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.034 Y:52.073 Z:57.604
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 94%
72 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 40
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2d2g38b1
99.9 39
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
3c2g38B_
99.9 39
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
4c4xy3A_
99.7 21
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4iogD_
95.6 19
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
6c2vs0B_
95.6 16
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3zbhC_
94.8 25
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
8c3gvmA_
94.6 22
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
9d1wa8a1
94.4 22
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
10c4i0xA_
93.3 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
11c4lwsB_
88.3 18
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsA_
87.6 18
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
87.4 26
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4wj2A_
84.0 19
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
15c2kg7B_
54.1 25
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c1bkvA_
25.2 44
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
17c1bkvC_
23.7 44
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
18c1bkvB_
23.7 44
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
19c4i0xJ_
23.6 20
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
20c3h6pB_
15.4 41
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:esat-6 like protein esxs;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
21c4bz4D_
not modelled 14.8 33
PDB header:copper-binding protein
Chain: D: PDB Molecule:copper-repressible polypeptide;
PDBTitle: cora is a surface-associated copper-binding protein2 important in methylomicrobium album bg8 copper acquisition
22c4gyxC_
not modelled 12.6 36
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
23c4gyxA_
not modelled 11.6 36
PDB header:structural protein, blood clotting
Chain: A: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
24c4gyxB_
not modelled 11.6 36
PDB header:structural protein, blood clotting
Chain: B: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
25c2y5tG_
not modelled 11.1 67
PDB header:immune system
Chain: G: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
26c2kg7A_
not modelled 11.0 41
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
27d1dlpa1
not modelled 10.9 29
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
28c2y5tE_
not modelled 10.5 67
PDB header:immune system
Chain: E: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
29c4dmtC_
not modelled 10.1 31
PDB header:structural protein
Chain: C: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
30c4dmtA_
not modelled 10.1 31
PDB header:structural protein
Chain: A: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
31c4dmtB_
not modelled 10.1 31
PDB header:structural protein
Chain: B: PDB Molecule:collagen iii derived peptide;
PDBTitle: crystal structure of a vwf binding collagen iii derived triple helical2 peptide
32c2y5tF_
not modelled 9.0 67
PDB header:immune system
Chain: F: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
33c2wuhD_
not modelled 8.8 67
PDB header:receptor/peptide
Chain: D: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
34c2lkqA_
not modelled 8.4 56
PDB header:immune system
Chain: A: PDB Molecule:immunoglobulin lambda-like polypeptide 1;
PDBTitle: nmr structure of the lambda 5 22-45 peptide
35c2wuhB_
not modelled 8.3 67
PDB header:receptor/peptide
Chain: B: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
36c2wuhC_
not modelled 8.3 67
PDB header:receptor/peptide
Chain: C: PDB Molecule:collagen peptide;
PDBTitle: crystal structure of the ddr2 discoidin domain bound to a2 triple-helical collagen peptide
37c4auoH_
not modelled 8.2 67
PDB header:hydrolase/peptide
Chain: H: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
38c4auoE_
not modelled 8.2 67
PDB header:hydrolase/peptide
Chain: E: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
39c2drxB_
not modelled 7.6 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
40c2drxA_
not modelled 7.5 67
PDB header:structural protein
Chain: A: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
41c2f6aJ_
not modelled 7.4 57
PDB header:cell adhesion/structural protein
Chain: J: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
42c6a0aA_
not modelled 7.4 50
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
43c2mqsD_
not modelled 7.1 67
PDB header:hydrolase
Chain: D: PDB Molecule:thp_t_chain;
PDBTitle: transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
44c2v53B_
not modelled 7.0 67
PDB header:cell adhesion
Chain: B: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
45c2v53C_
not modelled 7.0 67
PDB header:cell adhesion
Chain: C: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
46c2v53D_
not modelled 7.0 67
PDB header:cell adhesion
Chain: D: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
47c2drxC_
not modelled 7.0 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
48c6dzsD_
not modelled 7.0 31
PDB header:oxidoreductase
Chain: D: PDB Molecule:homoserine dehydrogenase;
PDBTitle: mycobacterial homoserine dehydrogenase thra in complex with nadp
49c5vmoB_
not modelled 7.0 50
PDB header:viral protein/apoptosis
Chain: B: PDB Molecule:bcl-2 interacting mediator of cell death;
PDBTitle: crystal structure of grouper iridovirus giv66:bim complex
50c2f6aE_
not modelled 6.9 57
PDB header:cell adhesion/structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
51c2f6aH_
not modelled 6.9 57
PDB header:cell adhesion/structural protein
Chain: H: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
52c2f6aI_
not modelled 6.9 57
PDB header:cell adhesion/structural protein
Chain: I: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
53c2f6aG_
not modelled 6.9 57
PDB header:cell adhesion/structural protein
Chain: G: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
54c2f6aF_
not modelled 6.9 57
PDB header:cell adhesion/structural protein
Chain: F: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
55c2drtA_
not modelled 6.9 67
PDB header:structural protein
Chain: A: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
56c2drtB_
not modelled 6.9 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
57c1qsuC_
not modelled 6.9 67
PDB header:structural protein
Chain: C: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
58c2drtC_
not modelled 6.9 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
59c4auoF_
not modelled 6.9 67
PDB header:hydrolase/peptide
Chain: F: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
60c4auoG_
not modelled 6.9 67
PDB header:hydrolase/peptide
Chain: G: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
61c4auoD_
not modelled 6.9 67
PDB header:hydrolase/peptide
Chain: D: PDB Molecule:triple-helical collagen peptide;
PDBTitle: crystal structure of mmp-1(e200a) in complex with a triple-2 helical collagen peptide
62c6a0cB_
not modelled 6.8 50
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
63c1cagA_
not modelled 6.8 67
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
64c1cagC_
not modelled 6.8 67
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
65c6a0aC_
not modelled 6.7 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
66c6a0aB_
not modelled 6.7 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
67d1ev7a_
not modelled 6.4 36
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease NaeI
68c1cgdA_
not modelled 6.3 67
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
69c1cagB_
not modelled 6.3 67
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
70c1cgdB_
not modelled 6.3 67
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
71c1cgdC_
not modelled 6.3 67
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
72c3pobD_
not modelled 6.3 45
PDB header:hydrolase
Chain: D: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
73c3ponA_
not modelled 6.3 45
PDB header:unknown function
Chain: A: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of mbl collagen-like peptide
74c3ponB_
not modelled 6.3 45
PDB header:unknown function
Chain: B: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of mbl collagen-like peptide
75c3pobC_
not modelled 6.3 45
PDB header:hydrolase
Chain: C: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
76c3pobB_
not modelled 6.3 45
PDB header:hydrolase
Chain: B: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
77c6a0cC_
not modelled 6.3 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
78c6a0cA_
not modelled 6.3 67
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
79c1qsuB_
not modelled 6.1 67
PDB header:structural protein
Chain: B: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
80c1qsuA_
not modelled 6.1 67
PDB header:structural protein
Chain: A: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
81c6hg7A_
not modelled 6.0 67
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)
82c6hg7C_
not modelled 6.0 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)
83c6hg7B_
not modelled 6.0 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-1(ii) chain;
PDBTitle: crystal structure of a collagen ii fragment containing the binding2 site of pedf and comp, (pog)4-lkg hrg ftg lqg-pog(4)
84c2mqsB_
not modelled 5.9 67
PDB header:hydrolase
Chain: B: PDB Molecule:thp_l_and_m_chain;
PDBTitle: transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
85c2mqsC_
not modelled 5.9 67
PDB header:hydrolase
Chain: C: PDB Molecule:thp_l_and_m_chain;
PDBTitle: transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
86c1ei8E_
not modelled 5.9 67
PDB header:contractile protein
Chain: E: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
87c1ei8A_
not modelled 5.9 67
PDB header:contractile protein
Chain: A: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
88c3b2cH_
not modelled 5.9 67
PDB header:structural protein
Chain: H: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
89c1ei8F_
not modelled 5.9 67
PDB header:contractile protein
Chain: F: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
90c3b2cF_
not modelled 5.9 67
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
91c3b2cC_
not modelled 5.9 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
92c3b2cE_
not modelled 5.9 67
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
93c3b2cI_
not modelled 5.9 67
PDB header:structural protein
Chain: I: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
94c3b2cD_
not modelled 5.9 67
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
95c1ei8B_
not modelled 5.9 67
PDB header:contractile protein
Chain: B: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
96c3b2cG_
not modelled 5.9 67
PDB header:structural protein
Chain: G: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
97c3b2cB_
not modelled 5.9 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
98c1ei8D_
not modelled 5.9 67
PDB header:contractile protein
Chain: D: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
99c2klwC_
not modelled 5.9 67
PDB header:de novo protein
Chain: C: PDB Molecule:(pog)10;
PDBTitle: solution structure of an abc collagen heterotrimer reveals a2 single-register helix stabilized by electrostatic3 interactions

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite