Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3748_(-)_4197414_4197773
DateFri Aug 9 18:20:44 BST 2019
Unique Job ID1463099a1c9e9f2e
SequenceVIVGAFLAEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.351 Y:23.083 Z:38.707
Model (left) based on template c4zjnA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:portal protein;
PDBTitle: crystal structure of the bacteriophage g20c portal protein
Confidence and coverage
Confidence: 64.6% Coverage: 18%
22 residues ( 18% of your sequence) have been modelled with 64.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4zjnA_



64.6 32
PDB header:transport protein
Chain: A: PDB Molecule:portal protein;
PDBTitle: crystal structure of the bacteriophage g20c portal protein
2c4dfcC_



37.8 13
PDB header:hydrolase/dna binding protein
Chain: C: PDB Molecule:transcription-repair-coupling factor;
PDBTitle: core uvra/trcf complex
3c3fpnB_



30.3 38
PDB header:dna binding protein
Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction domain;
PDBTitle: crystal structure of uvra-uvrb interaction domains
4d2b2na1



24.9 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
5d1pn0a2



24.3 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
6c3hjhA_



22.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:transcription-repair-coupling factor;
PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor
7c3gasA_



17.6 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
8d2eyqa4



16.7 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
9d2phna1



13.8 39
Fold:CofE-like
Superfamily:CofE-like
Family:CofE-like
10d1pjwa_



13.0 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
11d1zcca1



12.5 24
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Glycerophosphoryl diester phosphodiesterase
12c2eyqA_



12.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
13c5bjuA_



12.4 57
PDB header:membrane protein
Chain: A: PDB Molecule:wlal protein;
PDBTitle: x-ray structure of the pglf dehydratase from campylobacter jejuni in2 complex with udp and nad(h)
14d1t5la1



12.3 38
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
15c6fgkA_



11.7 18
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase ywac;
PDBTitle: crystal structure of the small alarmone synthethase 2 from bacillus2 subtilis
16c2kxjA_



11.6 50
PDB header:protein binding
Chain: A: PDB Molecule:ubx domain-containing protein 4;
PDBTitle: solution structure of ubx domain of human ubxd2 protein
17c5vugA_



10.4 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rv2277c;
PDBTitle: crystal structure of glycerophosphoryl diester phosphodiesterase2 domain of uncharacterized protein rv2277c from mycobacterium3 tuberculosis
18c4lkbA_



9.3 19
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein alr4568/putative 4-oxalocrotonate
PDBTitle: crystal structure of a putative 4-oxalocrotonate tautomerase from2 nostoc sp. pcc 7120
19c5dotA_



8.9 22
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
20c4r7oE_



8.7 21
PDB header:hydrolase
Chain: E: PDB Molecule:glycerophosphoryl diester phosphodiesterase, putative;
PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterasefrom bacillus anthraci
21c5douC_



not modelled 8.5 22
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
22c3l9dA_



not modelled 8.4 19
PDB header:transferase
Chain: A: PDB Molecule:putative gtp pyrophosphokinase;
PDBTitle: the crystal structure of smu.1046c from streptococcus mutans ua159
23d1ztxe1



not modelled 8.3 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
24d1kzfa_



not modelled 8.1 38
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:Autoinducer synthetase
25c1rfoC_



not modelled 8.0 83
PDB header:viral protein
Chain: C: PDB Molecule:whisker antigen control protein;
PDBTitle: trimeric foldon of the t4 phagehead fibritin
26c3ie4A_



not modelled 7.2 30
PDB header:immune system
Chain: A: PDB Molecule:gram-negative binding protein 3;
PDBTitle: b-glucan binding domain of drosophila gnbp3 defines a novel2 family of pattern recognition receptor
27c3f44A_



not modelled 7.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative monooxygenase;
PDBTitle: crystal structure of putative monooxygenase (yp_193413.1) from2 lactobacillus acidophilus ncfm at 1.55 a resolution
28d1oe1a2



not modelled 6.4 21
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
29c5dedA_



not modelled 6.3 18
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase yjbm;
PDBTitle: crystal structure of the small alarmone synthethase 1 from bacillus2 subtilis bound to its product pppgpp
30d1s6na_



not modelled 6.3 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
31c5wsnC_



not modelled 6.2 31
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
32c3rb7E_



not modelled 6.2 16
PDB header:metal binding protein
Chain: E: PDB Molecule:na/ca exchange protein;
PDBTitle: crystal structure of cbd12 from calx1.2
33c3uzeC_



not modelled 6.1 38
PDB header:immune system
Chain: C: PDB Molecule:envelope protein;
PDBTitle: crystal structure of the dengue virus serotype 3 envelope protein2 domain iii in complex with the variable domains of mab 4e11
34c3egpA_



not modelled 6.0 28
PDB header:viral protein
Chain: A: PDB Molecule:envelope protein;
PDBTitle: crystal structure analysis of dengue-1 envelope protein2 domain iii
35c3cjsA_



not modelled 5.9 44
PDB header:transferase/ribosomal protein
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: minimal recognition complex between prma and ribosomal protein l11
36d1ok8a1



not modelled 5.8 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
37c6cj6B_



not modelled 5.8 15
PDB header:viral protein
Chain: B: PDB Molecule:protein f9;
PDBTitle: structure of the poxvirus protein f9
38c2j6gA_



not modelled 5.8 24
PDB header:cell adhesion
Chain: A: PDB Molecule:faeg;
PDBTitle: faeg from f4ac etec strain 5_95, produced in tobacco plant chloroplast
39d1zela1



not modelled 5.5 47
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rv2827c N-terminal domain-like
40d1mwwa_



not modelled 5.5 15
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:Hypothetical protein HI1388.1
41c5ireA_



not modelled 5.3 27
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
42d1z66a1



not modelled 5.3 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
43c4qniA_



not modelled 5.2 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an auxiliary nutrient binding protein (bt3507)2 from bacteroides thetaiotaomicron vpi-5482 at 2.30 a resolution
44c2h0pA_



not modelled 5.1 21
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: nmr structure of the dengue-4 virus envelope protein domain2 iii
45c6ouuB_



not modelled 5.1 12
PDB header:virus like particle
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: symmetric reconstruction of human norovirus gii.4 minerva strain vlp2 in t=4 symmetry
46d1svba1



not modelled 5.1 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite