Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3749Ac_(RVBD3749Ac)_4198062_4198370
DateFri Aug 9 18:20:45 BST 2019
Unique Job ID4772e0ced2156890
SequenceMPFPVVLDAC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.578 Y:32.652 Z:29.311
Model (left) based on template c2hwwC_
Top template information
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
Confidence and coverage
Confidence: 63.6% Coverage: 57%
58 residues ( 57% of your sequence) have been modelled with 63.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2hwwC_



63.6 21
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
2d2fe1a1



59.2 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3c2fe1A_



59.2 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
4c6a7vG_



57.0 13
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
5c3ix7A_



50.2 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
6c5jpqd_



45.0 19
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
7c4ndkA_



40.6 39
PDB header:fluorescent protein, de novo protein
Chain: A: PDB Molecule:e23p-yfp, gfp-like fluorescent chromoprotein fp506,
PDBTitle: crystal structure of a computational designed engrailed homeodomain2 variant fused with yfp
8c3tndC_



39.6 9
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
9d1v8pa_



38.2 8
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
10c3i8oA_



37.7 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
11d1o4wa_



36.9 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c4ndlC_



35.3 32
PDB header:de novo protein
Chain: C: PDB Molecule:enh-c2b, computational designed homodimer;
PDBTitle: computational design and experimental verification of a symmetric2 homodimer
13c5yz4A_



33.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
14c1v8pK_



32.1 9
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
15c5wzfB_



25.1 17
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
16c4mj7B_



21.4 7
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
17d1v96a1



16.2 25
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1g3wa2



16.0 12
Fold:Iron-dependent repressor protein, dimerization domain
Superfamily:Iron-dependent repressor protein, dimerization domain
Family:Iron-dependent repressor protein, dimerization domain
19c5npvB_



11.9 43
PDB header:cell cycle
Chain: B: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: structure of human atg5-atg16l1(atg5bd) complex (i4)
20c5npwF_



11.8 43
PDB header:cell cycle
Chain: F: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: structure of human atg5-atg16l1(atg5bd) complex (c2)
21c5npvD_



not modelled 11.8 43
PDB header:cell cycle
Chain: D: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: structure of human atg5-atg16l1(atg5bd) complex (i4)
22c3dboB_



not modelled 9.2 45
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
23d1w8ia_



not modelled 8.8 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c2rghA_



not modelled 7.6 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
25c2rgoA_



not modelled 7.1 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
26c5x3tD_



not modelled 7.0 19
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
27d1h41a1



not modelled 7.0 20
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
28c6g4ww_



not modelled 6.9 31
PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s15a;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
29c3da1A_



not modelled 6.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
30c2hwyB_



not modelled 6.8 23
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
31c4tq0D_



not modelled 6.6 38
PDB header:protein binding
Chain: D: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg5-atg16n69
32d1u6za1



not modelled 6.6 19
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:Ppx associated domain
33c4tq0B_



not modelled 6.3 38
PDB header:protein binding
Chain: B: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg5-atg16n69
34c6nd1E_



not modelled 6.2 8
PDB header:protein transport
Chain: E: PDB Molecule:translocation protein sec66;
PDBTitle: cryoem structure of the sec complex from yeast
35c4m3lC_



not modelled 6.1 23
PDB header:ligase
Chain: C: PDB Molecule:e3 ubiquitin-protein ligase trim63;
PDBTitle: crystal structure of the coiled coil domain of murf1
36c1gqkB_



not modelled 6.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-d-glucuronidase;
PDBTitle: structure of pseudomonas cellulosa alpha-d-glucuronidase complexed2 with glucuronic acid
37d1l8na1



not modelled 5.5 30
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
38c1mqrA_



not modelled 5.3 30
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-d-glucuronidase;
PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6
39c5mdxX_



not modelled 5.3 29
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
40c5mdxx_



not modelled 5.3 29
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
41c2g16A_



not modelled 5.3 45
PDB header:luminescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of s65a y66s gfp variant after backbone2 fragmentation

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