Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3749c_(-)_4197806_4198096
DateFri Aug 9 18:20:45 BST 2019
Unique Job ID73827dc0c8bb58c0
SequenceVIVTTNLKHF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.340 Y:33.283 Z:20.342
Model (left) based on template d1y82a1
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 94.4% Coverage: 31%
30 residues ( 31% of your sequence) have been modelled with 94.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1y82a1



94.4 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2d1v96a1



89.2 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3d1t06a_



65.9 11
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:BC3264-like
4c3fysA_



26.2 12
PDB header:fatty acid-binding protein
Chain: A: PDB Molecule:protein degv;
PDBTitle: crystal structure of degv, a fatty acid binding protein2 from bacillus subtilis
5c3ldaA_



23.9 14
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
6c2of5K_



23.2 17
PDB header:apoptosis
Chain: K: PDB Molecule:leucine-rich repeat and death domain-containing protein;
PDBTitle: oligomeric death domain complex
7c3kk4B_



22.9 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
8c3lupA_



20.3 12
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:degv family protein;
PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae
9c4hdtA_



20.3 28
PDB header:isomerase
Chain: A: PDB Molecule:3-hydroxyisobutyryl-coa hydrolase;
PDBTitle: crystal structure of a carnitinyl-coa dehydratase from mycobacterium2 thermoresistibile
10c4o9lA_



18.9 18
PDB header:antiviral protein
Chain: A: PDB Molecule:mitochondrial antiviral signaling protein (mavs);
PDBTitle: crystal structure of horse mavs card domain mutant e26r
11c3bptA_



18.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:3-hydroxyisobutyryl-coa hydrolase;
PDBTitle: crystal structure of human beta-hydroxyisobutyryl-coa hydrolase in2 complex with quercetin
12d1hiod_



17.1 11
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
13c6hqaK_



16.1 12
PDB header:transcription
Chain: K: PDB Molecule:subunit (61/68 kda) of tfiid and saga complexes;
PDBTitle: molecular structure of promoter-bound yeast tfiid
14c3eglC_



15.7 9
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:degv family protein;
PDBTitle: crystal structure of degv family protein cg2579 from corynebacterium2 glutamicum
15c3rruA_



14.9 15
PDB header:signaling protein
Chain: A: PDB Molecule:tom1l1 protein;
PDBTitle: x-ray crystal structure of the vhs domain of human tom1-like protein,2 northeast structural genomics consortium target hr3050e
16c6dkeA_



14.9 13
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b1 protein;
PDBTitle: the x-ray crystal structure of streptococcus pneumoniae fatty acid2 kinase (fak) b1 protein loaded with palmitic acid (c16:0) to 1.763 angstrom resolution
17c3jr7A_



14.7 4
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized egv family protein cog1307;
PDBTitle: the crystal structure of the protein of degv family cog1307 with2 unknown function from ruminococcus gnavus atcc 29149
18c2dflA_



14.7 10
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
19d1p6ra_



14.6 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
20c4wzsB_



14.2 5
PDB header:transcription
Chain: B: PDB Molecule:tata-binding protein-associated phosphoprotein;
PDBTitle: crystal structure of the mot1 n-terminal domain in complex with tbp2 and nc2 bound to a promoter dna fragment
21d1h3ob_



not modelled 13.1 12
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
22c4wv4B_



not modelled 12.4 15
PDB header:transcription
Chain: B: PDB Molecule:transcription initiation factor tfiid subunit 8;
PDBTitle: heterodimer of taf8/taf10
23d1w2za3



not modelled 11.9 15
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
24c2npuA_



not modelled 11.7 15
PDB header:transferase
Chain: A: PDB Molecule:fkbp12-rapamycin complex-associated protein;
PDBTitle: the solution structure of the rapamycin-binding domain of2 mtor (frb)
25c4oa8A_



not modelled 11.4 11
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase family protein;
PDBTitle: x-ray crystal structure of o-methyltransferase from anaplasma2 phagocytophilum in apo form
26c3r0rA_



not modelled 11.1 22
PDB header:virus
Chain: A: PDB Molecule:porcine circovirus 2 (pcv2) capsid protein;
PDBTitle: the 2.3 a structure of porcine circovirus 2
27d1pzxa_



not modelled 10.4 23
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
28c1t4gA_



not modelled 10.2 14
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
29c1mgpA_



not modelled 10.2 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:hypothetical protein tm841;
PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function
30d1mgpa_



not modelled 10.2 17
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
31c3pl5A_



not modelled 10.2 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: fatty acid binding protein
32c3axjB_



not modelled 10.2 19
PDB header:dna binding protein
Chain: B: PDB Molecule:translin associated factor x, isoform b;
PDBTitle: high resolution crystal structure of c3po
33d2ev0a1



not modelled 9.6 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
34c5utoB_



not modelled 9.5 17
PDB header:transport protein
Chain: B: PDB Molecule:edd domain protein, degv family;
PDBTitle: the crystal structure of the staphylococcus aureus fatty acid kinase2 (fak) b1 protein loaded with palmitic acid to 1.83 angstrom3 resolution
35d2huec1



not modelled 9.4 11
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
36c4dg7D_



not modelled 9.2 21
PDB header:dna binding protein
Chain: D: PDB Molecule:gm27569p;
PDBTitle: low resolution structure of drosophila translin
37c2qrxA_



not modelled 9.1 17
PDB header:dna binding protein
Chain: A: PDB Molecule:gm27569p;
PDBTitle: crystal structure of drosophila melanogaster translin protein
38c3nyiA_



not modelled 9.0 13
PDB header:lipid binding protein
Chain: A: PDB Molecule:fat acid-binding protein;
PDBTitle: the crystal structure of a fat acid (stearic acid)-binding protein2 from eubacterium ventriosum atcc 27560.
39c1vw3D_



not modelled 8.7 14
PDB header:ribosome
Chain: D: PDB Molecule:54s ribosomal protein yml6, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
40d1j1ja_



not modelled 8.4 19
Fold:alpha-alpha superhelix
Superfamily:Translin
Family:Translin
41c6cngA_



not modelled 8.4 12
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b3 protein;
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b3 protein loaded with linoleic acid to 1.47 angstrom3 resolution
42d1za0a1



not modelled 8.2 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
43c2dt8A_



not modelled 8.2 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:degv family protein;
PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus
44c2ev5B_



not modelled 8.1 19
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
45d1id3b_



not modelled 7.8 11
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
46d1e2ka_



not modelled 7.7 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
47c2i4cA_



not modelled 7.5 24
PDB header:transport protein
Chain: A: PDB Molecule:bicarbonate transporter;
PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium
48c6dj6B_



not modelled 7.4 22
PDB header:transferase
Chain: B: PDB Molecule:fatty acid kinase (fak) b2 protein (spr1019);
PDBTitle: the x-ray crystal structure of the streptococcus pneumoniae fatty acid2 kinase (fak) b2 protein loaded with cis-oleic acid to 1.9 angstrom3 resolution
49c2g7zB_



not modelled 7.3 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein spy1493;
PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids
50c3csvA_



not modelled 7.3 11
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside phosphotransferase;
PDBTitle: crystal structure of a putative aminoglycoside phosphotransferase2 (yp_614837.1) from silicibacter sp. tm1040 at 2.15 a resolution
51c1g3wA_



not modelled 7.2 12
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
52d1xr4a1



not modelled 7.2 35
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
53c3pjaK_



not modelled 6.9 30
PDB header:hydrolase
Chain: K: PDB Molecule:translin-associated protein x;
PDBTitle: crystal structure of human c3po complex
54c4x9xA_



not modelled 6.6 22
PDB header:transferase
Chain: A: PDB Molecule:degv domain-containing protein mw1315;
PDBTitle: biochemical roles for conserved residues in the bacterial fatty acid2 binding protein family
55c4wv4A_



not modelled 6.5 17
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 10;
PDBTitle: heterodimer of taf8/taf10
56d3ctaa1



not modelled 6.5 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
57c3t0yD_



not modelled 6.3 22
PDB header:transcription regulator/protein binding
Chain: D: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
58c3zmdD_



not modelled 6.2 13
PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of absc, a marr family transcriptional2 regulator from streptomyces coelicolor
59d3fapb_



not modelled 6.1 15
Fold:Four-helical up-and-down bundle
Superfamily:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
Family:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
60d2isya1



not modelled 6.1 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
61d1juqa_



not modelled 6.0 15
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
62c2pg1L_



not modelled 5.9 24
PDB header:structural protein
Chain: L: PDB Molecule:cytoplasmic dynein 1 intermediate chain 2;
PDBTitle: structural analysis of a cytoplasmic dynein light chain-2 intermediate chain complex
63c2pg1J_



not modelled 5.9 24
PDB header:structural protein
Chain: J: PDB Molecule:cytoplasmic dynein 1 intermediate chain 2;
PDBTitle: structural analysis of a cytoplasmic dynein light chain-2 intermediate chain complex
64c2rodB_



not modelled 5.9 50
PDB header:apoptosis
Chain: B: PDB Molecule:noxa;
PDBTitle: solution structure of mcl-1 complexed with noxaa
65d1w6ga3



not modelled 5.9 4
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
66c5cviB_



not modelled 5.9 16
PDB header:transcription regulator
Chain: B: PDB Molecule:slor;
PDBTitle: structure of the manganese regulator slor
67d1g3wa1



not modelled 5.8 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
68c6mzdC_



not modelled 5.8 11
PDB header:transcription
Chain: C: PDB Molecule:transcription initiation factor tfiid subunit 3;
PDBTitle: human tfiid lobe a canonical
69c2k4bA_



not modelled 5.7 14
PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: copr repressor structure
70c5y26A_



not modelled 5.7 15
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase epsilon subunit d;
PDBTitle: crystal structure of native dpb4-dpb3
71c3t0yB_



not modelled 5.6 22
PDB header:transcription regulator/protein binding
Chain: B: PDB Molecule:nepr;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
72d1okra_



not modelled 5.6 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
73c4xlgB_



not modelled 5.4 21
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: c. glabrata slx1 in complex with slx4ccd.
74c3eo6B_



not modelled 5.4 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein of unknown function (duf1255);
PDBTitle: crystal structure of protein of unknown function (duf1255) (afe_2634)2 from acidithiobacillus ferrooxidans ncib8455 at 0.97 a resolution
75c3zc1E_



not modelled 5.3 12
PDB header:hydrolase
Chain: E: PDB Molecule:aftrax;
PDBTitle: crystal structure of afc3po
76c1zawZ_



not modelled 5.2 22
PDB header:structural protein
Chain: Z: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a
77c1zavZ_



not modelled 5.2 22
PDB header:structural protein
Chain: Z: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
78d1zavz1



not modelled 5.2 22
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain

Binding site prediction 

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