Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3751_(-)_4199052_4199267
DateFri Aug 9 18:20:45 BST 2019
Unique Job IDbd0996976df40376
SequenceVKRAKVQQIT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.918 Y:43.421 Z:34.244
Model (left) based on template c6en2A_
Top template information
PDB header:recombination
Chain: A: PDB Molecule:int protein;
PDBTitle: structure of the tn1549 transposon integrase (aa 82-397, r225k) in2 complex with a circular intermediate dna (ci6b-dna)
Confidence and coverage
Confidence: 99.8% Coverage: 89%
63 residues ( 89% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6en2A_



99.8 35
PDB header:recombination
Chain: A: PDB Molecule:int protein;
PDBTitle: structure of the tn1549 transposon integrase (aa 82-397, r225k) in2 complex with a circular intermediate dna (ci6b-dna)
2c3nkhB_



99.7 25
PDB header:recombination
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus
3c5jjvA_



99.7 23
PDB header:recombination
Chain: A: PDB Molecule:tyrosine recombinase xerh;
PDBTitle: crystal structure of xerh site-specific recombinase bound to2 palindromic difh substrate: post-cleavage complex
4c5hxyE_



99.7 34
PDB header:recombination
Chain: E: PDB Molecule:tyrosine recombinase xera;
PDBTitle: crystal structure of xera recombinase
5c5vfzA_



99.7 20
PDB header:dna binding protein
Chain: A: PDB Molecule:gp33;
PDBTitle: integrase from mycobacterium phage brujita
6c2a3vA_



99.6 30
PDB header:recombination
Chain: A: PDB Molecule:site-specific recombinase inti4;
PDBTitle: structural basis for broad dna-specificity in integron recombination
7c5dcfA_



99.6 25
PDB header:recombination
Chain: A: PDB Molecule:tyrosine recombinase xerd,dna translocase ftsk;
PDBTitle: c-terminal domain of xerd recombinase in complex with gamma domain of2 ftsk
8c1a0pA_



99.6 23
PDB header:dna recombination
Chain: A: PDB Molecule:site-specific recombinase xerd;
PDBTitle: site-specific recombinase, xerd
9c1ma7A_



99.6 19
PDB header:hydrolase, ligase/dna
Chain: A: PDB Molecule:cre recombinase;
PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27
10c3uxuA_



99.5 21
PDB header:recombination
Chain: A: PDB Molecule:probable integrase;
PDBTitle: the structure of the catalytic domain of the sulfolobus spindle-shaped2 viral integrase reveals an evolutionarily conserved catalytic core3 and supports a mechanism of dna cleavage in trans
11c1crxA_



99.5 19
PDB header:replication/dna
Chain: A: PDB Molecule:cre recombinase;
PDBTitle: cre recombinase/dna complex reaction intermediate i
12c5c6kB_



99.5 31
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: bacteriophage p2 integrase catalytic domain
13d1aiha_



99.5 31
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
14d1f44a2



99.5 17
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
15c4a8eA_



99.5 29
PDB header:cell cycle
Chain: A: PDB Molecule:probable tyrosine recombinase xerc-like;
PDBTitle: the structure of a dimeric xer recombinase from archaea
16c1z1bA_



99.3 24
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
17d1a0pa2



99.2 23
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
18d1p7da_



99.1 24
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
19d1ae9a_



98.9 16
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
20d5crxb2



98.7 22
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
21c2v6eB_



not modelled 87.7 24
PDB header:hydrolase
Chain: B: PDB Molecule:protelemorase;
PDBTitle: protelomerase telk complexed with substrate dna
22c4f43A_



not modelled 68.6 25
PDB header:recombination/dna
Chain: A: PDB Molecule:protelomerase;
PDBTitle: protelomerase tela mutant r255a complexed with caag hairpin dna
23c2f4qA_



not modelled 48.8 23
PDB header:isomerase
Chain: A: PDB Molecule:type i topoisomerase, putative;
PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib
24c2h7fX_



not modelled 46.2 19
PDB header:isomerase/dna
Chain: X: PDB Molecule:dna topoisomerase 1;
PDBTitle: structure of variola topoisomerase covalently bound to dna
25d1a41a_



not modelled 42.1 19
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Eukaryotic DNA topoisomerase I, catalytic core
26c2mqkA_



not modelled 34.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
27d2auwa1



not modelled 30.3 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
28d1l8qa1



not modelled 29.3 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Chromosomal replication initiation factor DnaA C-terminal domain IV
29c3sohB_



not modelled 28.1 11
PDB header:motor protein
Chain: B: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: architecture of the flagellar rotor
30c3pvpA_



not modelled 18.5 13
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa;
PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna
31d2aq0a1



not modelled 16.7 24
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
32c5of3E_



not modelled 13.4 12
PDB header:replication
Chain: E: PDB Molecule:dna primase large subunit pril;
PDBTitle: crystal structure of the heterotrimeric prislx primase from s.2 solfataricus.
33c2vz4A_



not modelled 12.5 12
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: the n-terminal domain of merr-like protein tipal bound to promoter dna
34c4ua2B_



not modelled 12.4 11
PDB header:dna binding protein
Chain: B: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of dual function transcriptional regulator merr from2 bacillus megaterium mb1
35d1xc5a1



not modelled 10.7 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
36c2auwB_



not modelled 10.7 14
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
37c4r4eA_



not modelled 10.4 21
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
38c3vdoA_



not modelled 9.9 14
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
39c2yqkA_



not modelled 9.5 15
PDB header:transcription/apoptosis
Chain: A: PDB Molecule:arginine-glutamic acid dipeptide repeats protein;
PDBTitle: solution structure of the sant domain in arginine-glutamic2 acid dipeptide (re) repeats
40c3hh0C_



not modelled 8.4 16
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr family from2 bacillus cereus
41c2eqrA_



not modelled 8.3 16
PDB header:transcription
Chain: A: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1
42c3pkrA_



not modelled 8.0 4
PDB header:motor protein
Chain: A: PDB Molecule:flagellar motor switch protein;
PDBTitle: crystal structure of flig (residue 86-343) from h. pylori
43d2iw5b1



not modelled 7.9 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
44c2x0lB_



not modelled 7.3 18
PDB header:transcription
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: crystal structure of a neuro-specific splicing variant of2 human histone lysine demethylase lsd1.
45c2iw5B_



not modelled 7.3 18
PDB header:oxidoreductase/transcription regulator
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: structural basis for corest-dependent demethylation of nucleosomes by2 the human lsd1 histone demethylase
46c2xajB_



not modelled 7.3 18
PDB header:transcription
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: crystal structure of lsd1-corest in complex with (-)-trans-2 2-phenylcyclopropyl-1-amine
47c2v1dB_



not modelled 7.3 18
PDB header:oxidoreductase/repressor
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
48c4a69C_



not modelled 6.7 13
PDB header:transcription
Chain: C: PDB Molecule:nuclear receptor corepressor 2;
PDBTitle: structure of hdac3 bound to corepressor and inositol tetraphosphate
49c3gpvA_



not modelled 6.6 8
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr2 family from bacillus thuringiensis
50c3skqA_



not modelled 6.0 18
PDB header:metal transport
Chain: A: PDB Molecule:mitochondrial distribution and morphology protein 38;
PDBTitle: mdm38 is a 14-3-3-like receptor and associates with the protein2 synthesis machinery at the inner mitochondrial membrane
51d1bl0a2



not modelled 5.9 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
52d1d5ya2



not modelled 5.8 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
53d2crga1



not modelled 5.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain

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