Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3755c_(-)_4201467_4202066
DateFri Aug 9 18:20:45 BST 2019
Unique Job IDb39b46940847cdbe
SequenceVNAVPSDLTP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.385 Y:43.050 Z:57.012
Model (left) based on template d2h1ta1
Top template information
Fold:Spiral beta-roll
Superfamily:PA1994-like
Family:PA1994-like
Confidence and coverage
Confidence:100.0% Coverage: 88%
176 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2h1ta1



100.0 27
Fold:Spiral beta-roll
Superfamily:PA1994-like
Family:PA1994-like
2d1jiwi_



45.3 14
Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Metalloprotease inhibitor
3c5aj1A_



19.9 50
PDB header:structural protein
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: solution structure of the smarc domain
4c2k7mA_



14.1 28
PDB header:membrane protein
Chain: A: PDB Molecule:gap junction alpha-5 protein;
PDBTitle: structure of the connexin40 carboxyl terminal domain
5c4d77A_



12.0 29
PDB header:signaling protein
Chain: A: PDB Molecule:gliomedin;
PDBTitle: high-resolution structure of the extracellular olfactomedin2 domain from gliomedin
6c2gtjA_



12.0 22
PDB header:signaling protein
Chain: A: PDB Molecule:fyn-binding protein;
PDBTitle: reduced form of adap hsh3-n-domain
7c6homD_



10.8 50
PDB header:gene regulation
Chain: D: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
8c5tvzA_



10.7 15
PDB header:transport protein
Chain: A: PDB Molecule:nucleoporin pom152;
PDBTitle: solution nmr structure of saccharomyces cerevisiae pom152 ig-like2 repeat, residues 718-820
9c5amoA_



10.6 29
PDB header:signaling protein
Chain: A: PDB Molecule:noelin;
PDBTitle: structure of a mouse olfactomedin-1 disulfide-linked dimer of the2 olfactomedin domain and part of the coiled coil
10c4wxuA_



10.1 36
PDB header:protein binding
Chain: A: PDB Molecule:myocilin;
PDBTitle: crystal structure of the selenomthionine incorporated myocilin2 olfactomedin domain e396d variant.
11c3m4wH_



9.9 63
PDB header:signaling protein/signaling protein
Chain: H: PDB Molecule:sigma-e factor negative regulatory protein;
PDBTitle: structural basis for the negative regulation of bacterial stress2 response by rseb
12c6homB_



9.3 50
PDB header:gene regulation
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
13c6honD_



9.3 50
PDB header:gene regulation
Chain: D: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
14c2w56B_



9.2 22
PDB header:unknown function
Chain: B: PDB Molecule:vc0508;
PDBTitle: structure of the hypothetical protein vc0508 from vibrio cholerae2 vsp-ii pathogenicity island
15c6honB_



9.1 50
PDB header:gene regulation
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 4, isoform l;
PDBTitle: drosophila not4 cbm peptide bound to human caf40
16c6eluJ_



8.9 27
PDB header:antitoxin
Chain: J: PDB Molecule:serum resistance associated; vsg protein;
PDBTitle: structure of serum resistance associated protein from t. b.2 rhodesiense
17d1jz8a4



8.8 18
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:beta-Galactosidase, domain 5
18d2d81a1



8.7 36
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:PHB depolymerase-like
19d1o1za_



8.0 36
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Glycerophosphoryl diester phosphodiesterase
20d3bb9a1



7.9 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
21c6nk6G_



not modelled 7.9 16
PDB header:virus like particle/signaling protein
Chain: G: PDB Molecule:e2 glycoprotein;
PDBTitle: electron cryo-microscopy of chikungunya vlp in complex with mouse2 mxra8 receptor
22c1wx4B_



not modelled 7.9 25
PDB header:oxidoreductase/metal transport
Chain: B: PDB Molecule:melc;
PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of dithiothreitol
23c5afbA_



not modelled 7.8 36
PDB header:signaling protein
Chain: A: PDB Molecule:latrophilin-3;
PDBTitle: crystal structure of the latrophilin3 lectin and2 olfactomedin domains
24c2mpvA_



not modelled 7.3 27
PDB header:protein binding
Chain: A: PDB Molecule:major fimbrial subunit of aggregative adherence fimbria ii
PDBTitle: structural insight into host recognition and biofilm formation by2 aggregative adherence fimbriae of enteroaggregative esherichia coli
25d1l5aa2



not modelled 7.2 33
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
26c3rlgA_



not modelled 7.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a;
PDBTitle: crystal structure of loxosceles intermedia phospholipase d isoform 12 h12a mutant
27d2q07a3



not modelled 6.6 57
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:AF0587 pre C-terminal domain-like
28c3j0cH_



not modelled 6.5 15
PDB header:virus
Chain: H: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: models of e1, e2 and cp of venezuelan equine encephalitis virus tc-832 strain restrained by a near atomic resolution cryo-em map
29c3n43B_



not modelled 6.3 15
PDB header:viral protein
Chain: B: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: crystal structures of the mature envelope glycoprotein complex2 (trypsin cleavage) of chikungunya virus.
30c5u9oD_



not modelled 6.3 14
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
31c2xfbI_



not modelled 6.2 15
PDB header:virus
Chain: I: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: the chikungunya e1 e2 envelope glycoprotein complex fit into2 the sindbis virus cryo-em map
32c6g1cV_



not modelled 5.9 20
PDB header:antitoxin
Chain: V: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the n-terminal domain of burkholderia2 pseudomallei antitoxin hicb
33c2r9qD_



not modelled 5.9 35
PDB header:hydrolase
Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase;
PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens
34c4q6xA_



not modelled 5.8 29
PDB header:lyase
Chain: A: PDB Molecule:phospholipase d stsictox-betaic1;
PDBTitle: structure of phospholipase d beta1b1i from sicarius terrosus venom at2 2.14 a resolution
35c2f9rC_



not modelled 5.7 29
PDB header:hydrolase
Chain: C: PDB Molecule:sphingomyelinase d 1;
PDBTitle: crystal structure of the inactive state of the smase i, a2 sphingomyelinase d from loxosceles laeta venom
36d1yb3a1



not modelled 5.4 12
Fold:YktB/PF0168-like
Superfamily:YktB/PF0168-like
Family:PF0168-like
37c4hvmC_



not modelled 5.4 11
PDB header:biosynthetic protein
Chain: C: PDB Molecule:tlmii;
PDBTitle: crystal structure of tallysomycin biosynthesis protein tlmii
38c3fzeA_



not modelled 5.3 36
PDB header:protein binding
Chain: A: PDB Molecule:protein ste5;
PDBTitle: structure of the 'minimal scaffold' (ms) domain of ste5 that2 cocatalyzes fus3 phosphorylation by ste7
39d1vd6a1



not modelled 5.2 36
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Glycerophosphoryl diester phosphodiesterase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite