Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3756c_(proZ)_4202072_4202791
DateFri Aug 9 18:20:46 BST 2019
Unique Job IDbd2baa3597bb8a2a
SequenceMNFLQQALSY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.804 Y:50.777 Z:76.947
Model (left) based on template c4ymuC_
Top template information
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
Confidence and coverage
Confidence: 99.9% Coverage: 85%
204 residues ( 85% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ymuC_



99.9 21
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
2d2onkc1



99.9 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
3c2onkC_



99.9 15
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
4c4tqvI_



99.9 15
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
5c3d31D_



99.8 18
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
6d3d31c1



99.8 18
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7d3dhwa1



99.8 22
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
8c2r6gF_



99.8 15
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
9d2r6gf2



99.8 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10c4tqvJ_



99.8 11
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
11c3fh6F_



99.8 15
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
12d2r6gg1



99.7 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



76.7 14
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14c2m8gX_



18.6 19
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
15d1ntca_



15.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
16d1umqa_



15.5 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
17c1umqA_



15.5 16
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
18c4l5eA_



14.6 13
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
19c5lj7B_



14.3 11
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
20c5nikK_



12.7 15
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
21c5xu1M_



not modelled 11.4 16
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
22c2jwaA_



not modelled 11.4 17
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
23c2ks1A_



not modelled 10.5 19
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
24d2jdid1



not modelled 10.4 33
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
25c2mkvA_



not modelled 8.8 20
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
26d1etob_



not modelled 8.7 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
27d1fipa_



not modelled 8.3 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
28c3e7lD_



not modelled 7.8 13
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
29c5ws4A_



not modelled 7.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
30d1etxa_



not modelled 7.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
31c2ka1B_



not modelled 7.5 30
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
32c2ka2B_



not modelled 7.5 30
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
33c2ka1A_



not modelled 7.5 30
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
34c2ka2A_



not modelled 7.5 30
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
35d1g2ha_



not modelled 7.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
36c1g2hA_



not modelled 7.1 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
37d1skye1



not modelled 7.1 33
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
38c2jo1A_



not modelled 6.8 15
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
39d2auwa1



not modelled 6.7 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
40c2j5dA_



not modelled 6.7 30
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting protein 3;
PDBTitle: nmr structure of bnip3 transmembrane domain in lipid bicelles
41d2phcb1



not modelled 6.7 16
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
42c2lhuA_



not modelled 6.6 19
PDB header:structural protein
Chain: A: PDB Molecule:mybpc3 protein;
PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain
43c2k1lB_



not modelled 6.3 39
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
44c2k1kA_



not modelled 6.3 39
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
45c2k1lA_



not modelled 6.3 39
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
46c2k1kB_



not modelled 6.3 39
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
47c2zp2B_



not modelled 6.0 12
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
48d1fx0b1



not modelled 5.9 33
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
49c5m87A_



not modelled 5.8 13
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
50c3mmlD_



not modelled 5.7 22
PDB header:hydrolase
Chain: D: PDB Molecule:allophanate hydrolase subunit 1;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
51c1ojlD_



not modelled 5.7 23
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
52c2m1aA_



not modelled 5.5 22
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 rev arginine-rich motif (arm);
PDBTitle: hiv-1 rev arm peptide (residues t34-r50)
53c1ciiA_



not modelled 5.4 25
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
54c5m7nA_



not modelled 5.4 19
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
55d2ns0a1



not modelled 5.4 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
56c2cw1A_



not modelled 5.4 33
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
57c3rkoF_



not modelled 5.4 7
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
58c2momB_



not modelled 5.4 29
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
59c2momC_



not modelled 5.4 29
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
60c1etgB_



not modelled 5.3 21
PDB header:viral protein/rna
Chain: B: PDB Molecule:rev peptide;
PDBTitle: rev response element (rre) rna complexed with rev peptide,2 nmr, 19 structures
61c1etfB_



not modelled 5.3 21
PDB header:viral protein/rna
Chain: B: PDB Molecule:rev peptide;
PDBTitle: rev response element (rre) rna complexed with rev peptide,2 nmr, minimized average structure

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below