Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3759c_(proX)_4204604_4205551
DateFri Aug 9 18:20:46 BST 2019
Unique Job IDa5a06263576dcbae
SequenceMRMLRRLRRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.963 Y:47.760 Z:61.605
Model (left) based on template c4ne4A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein
PDBTitle: crystal structure of abc transporter substrate binding protein prox2 from agrobacterium tumefaciens cocrystalized with btb
Confidence and coverage
Confidence:100.0% Coverage: 85%
269 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ne4A_
100.0 28
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein
PDBTitle: crystal structure of abc transporter substrate binding protein prox2 from agrobacterium tumefaciens cocrystalized with btb
2c4wepA_
100.0 24
PDB header:transport protein
Chain: A: PDB Molecule:putative osmoprotectant uptake system substrate-binding
PDBTitle: apo yehz from escerichia coli
3d1sw5a_
100.0 22
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
4c4z7eB_
100.0 25
PDB header:transport protein
Chain: B: PDB Molecule:lmo1422 protein;
PDBTitle: soluble binding domain of lmo1422 abc-transporter
5c3r6uA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:choline-binding protein;
PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
6c3o66A_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter;
PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter
7c3pppA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein;
PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
8d1r9la_
100.0 14
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
9c4xz6A_
100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/proline abc transporter, periplasmic
PDBTitle: tmox in complex with tmao
10c6efrA_
100.0 33
PDB header:choline-binding protein
Chain: A: PDB Molecule:inicsnfr 1.0, a genetically encoded nicotine biosensor,
PDBTitle: crystal structure of inicsnfr 1.0
11c2rejA_
100.0 17
PDB header:choline-binding protein
Chain: A: PDB Molecule:putative glycine betaine abc transporter protein;
PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
12c3tmgA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter,
PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
13c3l6gA_
100.0 15
PDB header:glycine betaine-binding protein
Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding
PDBTitle: crystal structure of lactococcal opuac in its open conformation
14c3chgB_
100.0 13
PDB header:ligand binding protein
Chain: B: PDB Molecule:glycine betaine-binding protein;
PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
15c3un6A_
99.6 14
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein saouhsc_00137;
PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound
16c3e4rA_
99.6 18
PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein;
PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes
17c3uifA_
99.6 15
PDB header:transport protein
Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding
PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt
18c2x26A_
99.5 18
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein;
PDBTitle: crystal structure of the periplasmic aliphatic sulphonate binding2 protein ssua from escherichia coli
19c6jf1A_
99.5 13
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of the substrate binding protein of a methionine2 transporter from streptococcus pneumoniae
20c4ntlA_
99.5 13
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein, yaec family;
PDBTitle: crystal structure of a lipoprotein, yaec family (ef3198) from2 enterococcus faecalis v583 at 1.80 a resolution
21c4gotA_
not modelled 99.5 14
PDB header:lipid binding protein
Chain: A: PDB Molecule:methionine-binding lipoprotein metq;
PDBTitle: crystal structure of a putative methionine-binding lipoprotein2 (bsu32730) from bacillus subtilis subsp. subtilis str. 168 at 1.95 a3 resolution
22c3gxaA_
not modelled 99.5 14
PDB header:protein binding
Chain: A: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of gna1946
23c2de4B_
not modelled 99.5 15
PDB header:hydrolase
Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b;
PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid
24c3ix1A_
not modelled 99.5 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding
PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
25c3ix1B_
not modelled 99.5 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding
PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
26c2x7pA_
not modelled 99.4 7
PDB header:unknown function
Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme;
PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold
27c3k2dA_
not modelled 99.4 15
PDB header:immune system
Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component;
PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
28c3qslA_
not modelled 99.4 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50
29c4q5tA_
not modelled 99.4 13
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of an atmb (putative membrane lipoprotein) from2 streptococcus mutans ua159 at 1.91 a resolution
30c3ir1F_
not modelled 99.4 15
PDB header:protein binding
Chain: F: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of lipoprotein gna1946 from neisseria meningitidis
31c3hn0A_
not modelled 99.4 13
PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein;
PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution
32c3tqwA_
not modelled 99.3 17
PDB header:transport protein
Chain: A: PDB Molecule:methionine-binding protein;
PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
33c4k3fA_
not modelled 99.3 14
PDB header:transport protein
Chain: A: PDB Molecule:probable tonb-dependent receptor;
PDBTitle: crystal structure of a putative tonb-dependent receptor (pa5505) from2 pseudomonas aeruginosa pao1 at 1.60 a resolution
34c2g29A_
not modelled 99.3 10
PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein nrta;
PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803
35c4ef2A_
not modelled 99.3 13
PDB header:methionine-binding protein
Chain: A: PDB Molecule:pheromone cob1/lipoprotein, yaec family;
PDBTitle: crystal structure of a pheromone cob1 precursor/lipoprotein, yaec2 family (ef2496) from enterococcus faecalis v583 at 2.10 a resolution
36c2i4cA_
not modelled 99.3 13
PDB header:transport protein
Chain: A: PDB Molecule:bicarbonate transporter;
PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium
37c3up9A_
not modelled 99.3 12
PDB header:methionine-binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative lipoprotein (actodo_00931) from2 actinomyces odontolyticus atcc 17982 at 2.35 a resolution
38c4ib2B_
not modelled 99.3 13
PDB header:transport protein
Chain: B: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of a putative lipoprotein (rumgna_00858) from2 ruminococcus gnavus atcc 29149 at 1.76 a resolution
39c4h67D_
not modelled 99.2 12
PDB header:transferase
Chain: D: PDB Molecule:pyrimidine precursor biosynthesis enzyme thi5;
PDBTitle: crystal structure of hmp synthase thi5 from s. cerevisiae
40c4oteA_
not modelled 99.2 15
PDB header:protein transport
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of a putative lipoprotein (cd630_1653) from2 clostridium difficile 630 at 2.20 a resolution
41c6esvA_
not modelled 99.2 10
PDB header:signaling protein
Chain: A: PDB Molecule:putative periplasmic phosphite-binding-like protein (pbl)
PDBTitle: structure of the phosphate-bound form of aiox from rhizobium sp. str.2 nt-26
42c4qhqA_
not modelled 99.2 15
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: the structure of a nutrient binding protein from burkholderia2 cenocepacia bound to methionine
43c4esxA_
not modelled 99.2 9
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine biosynthesis enzyme thi13;
PDBTitle: crystal structure of c. albicans thi5 complexed with plp
44c4dddA_
not modelled 99.1 14
PDB header:immune system
Chain: A: PDB Molecule:immunogenic protein;
PDBTitle: crystal structure of an immunogenic protein from ehrlichia chaffeensis
45d1xs5a_
not modelled 99.1 12
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
46c3p7iA_
not modelled 99.1 13
PDB header:transport protein
Chain: A: PDB Molecule:phnd, subunit of alkylphosphonate abc transporter;
PDBTitle: crystal structure of escherichia coli phnd in complex with 2-2 aminoethyl phosphonate
47d1p99a_
not modelled 99.1 12
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
48c1p99A_
not modelled 99.1 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg110;
PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus aureus
49c5me4A_
not modelled 99.0 9
PDB header:transport protein
Chain: A: PDB Molecule:probable phosphite transport system-binding protein htxb;
PDBTitle: the structure of htxb from pseudomonas stutzeri in complex with2 hypophosphite to 1.52 a resolution
50d1us5a_
not modelled 99.0 15
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
51c4nmyA_
not modelled 99.0 10
PDB header:transport protein
Chain: A: PDB Molecule:abc-type transport system, extracellular solute-binding
PDBTitle: crystal structure of the thiamin-bound form of substrate-binding2 protein of abc transporter from clostridium difficile
52c5lv1C_
not modelled 98.9 11
PDB header:periplasmic binding protein
Chain: C: PDB Molecule:ptxb;
PDBTitle: 2.12 a resolution structure of ptxb from prochlorococcus marinus (mit2 9301) in complex with phosphite
53c5o2kE_
not modelled 98.8 13
PDB header:transport protein
Chain: E: PDB Molecule:probable phosphite transport system-binding protein ptxb;
PDBTitle: native apo-structure of pseudomonas stutzeri ptxb to 2.1 a resolution
54c5lq8A_
not modelled 98.7 13
PDB header:periplasmic binding protein
Chain: A: PDB Molecule:putative phosphonate binding protein for abc transporter;
PDBTitle: 1.52 a resolution structure of phnd1 from prochlorococcus marinus (mit2 9301) in complex with methylphosphonate
55c5jvbB_
not modelled 98.6 12
PDB header:transport protein
Chain: B: PDB Molecule:phosphonate abc transporter, periplasmic phosphonate-
PDBTitle: 1.95a resolution structure of ptxb from trichodesmium erythraeum2 ims101 in complex with phosphite
56c5ub6B_
not modelled 98.6 12
PDB header:metal binding protein
Chain: B: PDB Molecule:phosphate-binding protein;
PDBTitle: xac2383 from xanthomonas citri bound to pyrophosphate
57c3n5lA_
not modelled 98.5 14
PDB header:transport protein
Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter;
PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution
58d2nxoa1
not modelled 98.5 13
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
59c2h5yC_
not modelled 98.3 11
PDB header:metal transport
Chain: C: PDB Molecule:molybdate-binding periplasmic protein;
PDBTitle: crystallographic structure of the molybdate-binding protein of2 xanthomonas citri at 1.7 ang resolution bound to molybdate
60c6ddnB_
not modelled 98.2 15
PDB header:transport protein
Chain: B: PDB Molecule:probable sulfate-binding lipoprotein subi;
PDBTitle: the sulfate-binding protein subi from mycobacterium tuberculosis h37rv
61d1amfa_
not modelled 98.2 11
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
62c4n13A_
not modelled 98.1 10
PDB header:transport protein
Chain: A: PDB Molecule:phosphate abc transporter, periplasmic phosphate-binding
PDBTitle: crystal structure of psts (bb_0215) from borrelia burgdorferi
63d1atga_
not modelled 98.1 9
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
64d1zbma1
not modelled 98.1 14
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
65c3muqB_
not modelled 98.0 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633
66c4kd5A_
not modelled 97.8 9
PDB header:transport protein
Chain: A: PDB Molecule:abc-type transport system, molybdenum-specific
PDBTitle: substrate binding domain of putative molybdenum abc transporter from2 clostridium difficile
67c4nhbB_
not modelled 97.8 11
PDB header:transport protein
Chain: B: PDB Molecule:trap dicarboxylate transporter-dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio desulfuricans (ddes_1525), target efi-510107, with3 bound sn-glycerol-3-phosphate
68c4q0cA_
not modelled 97.8 19
PDB header:transferase
Chain: A: PDB Molecule:virulence sensor protein bvgs;
PDBTitle: 3.1 a resolution crystal structure of the b. pertussis bvgs2 periplasmic domain
69c4pfbA_
not modelled 97.7 12
PDB header:transport protein
Chain: A: PDB Molecule:c4-dicarboxylate-binding protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 fusobacterium nucleatun (fn1258, target efi-510120) with bound sn-3 glycerol-3-phosphate
70c4jb7A_
not modelled 97.7 10
PDB header:cell invasion
Chain: A: PDB Molecule:accessory colonization factor acfc;
PDBTitle: 1.42 angstrom resolution crystal structure of accessory colonization2 factor acfc (acfc) in complex with d-aspartic acid
71c3lr1A_
not modelled 97.7 11
PDB header:transport protein
Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate-
PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens
72c4o8mA_
not modelled 97.7 13
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein2 actinobacillus succinogenes 130z, target efi-510004, with bound l-3 galactonate
73c4nq8B_
not modelled 97.7 16
PDB header:protein transport
Chain: B: PDB Molecule:putative periplasmic substrate-binding transport protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bordetella bronchispeptica (bb3421), target efi-510039, with density3 modeled as pantoate
74c4ng7A_
not modelled 97.6 11
PDB header:transport protein
Chain: A: PDB Molecule:trap periplasmic solute binding protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 citrobacter koseri (cko_04899), target efi-510094, apo, open3 structure
75c3fj7A_
not modelled 97.6 8
PDB header:protein binding
Chain: A: PDB Molecule:major antigenic peptide peb3;
PDBTitle: crystal structure of l-phospholactate bound peb3
76c4p1eA_
not modelled 97.6 12
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 escherichia fergusonii (efer_1530), target efi-510119, apo open3 structure, phased with iodide
77d2czla1
not modelled 97.5 13
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
78c4ovsB_
not modelled 97.5 13
PDB header:solute-binding protein
Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 sulfurospirillum deleyianum dsm 6946 (sdel_0447), target efi-510309,3 with bound succinate
79c3cvgD_
not modelled 97.5 14
PDB header:metal binding protein
Chain: D: PDB Molecule:putative metal binding protein;
PDBTitle: crystal structure of a periplasmic putative metal binding protein
80c3gyyC_
not modelled 97.5 9
PDB header:transport protein
Chain: C: PDB Molecule:periplasmic substrate binding protein;
PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state
81c4rxlA_
not modelled 97.5 10
PDB header:transport protein
Chain: A: PDB Molecule:molybdenum abc transporter, periplasmic molybdenum-binding
PDBTitle: crystal structure of molybdenum abc transporter solute binding protein2 vc_a0726 from vibrio cholerae, target efi-510913, in complex with3 tungstate
82c4n8yA_
not modelled 97.5 18
PDB header:transport protein
Chain: A: PDB Molecule:putative trap-type c4-dicarboxylate transport system,
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bradyrhizobium sp. btai1 b (bbta_0128), target efi-5100563 (bbta_0128), complex with alpha/beta-d-galacturonate
83c4p47A_
not modelled 97.5 13
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ochrobactrum anthropi (oant_4429), target efi-510151, c-termius bound3 in ligand binding pocket
84c4pddA_
not modelled 97.5 15
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp js666 (bpro_0088, target efi-510167) bound to d-3 erythronate
85c2hpgB_
not modelled 97.5 11
PDB header:ligand binding protein
Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding
PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein
86c3woaA_
not modelled 97.5 9
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
87c4pakA_
not modelled 97.5 11
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a3 nephridial symbiont of the earthworm eisenia foetida, bound to (r)-4 pantoic acid
88c4ovtA_
not modelled 97.4 11
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ochrobacterium anthropi (oant_3902), target efi-510153, with bound l-3 fuconate
89c5my5A_
not modelled 97.4 10
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter periplasmic substrate-binding protein;
PDBTitle: tungstate binding protein - tupa - from desulfovibrio alaskensis g20
90d1xvxa_
not modelled 97.4 14
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
91c4o94B_
not modelled 97.4 11
PDB header:transport protein
Chain: B: PDB Molecule:trap dicarboxylate transporter dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_3329), target efi-510223, with3 bound succinate
92c4pfrA_
not modelled 97.3 12
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3541, target efi-510203), apo open3 partially disordered
93c4p56C_
not modelled 97.3 16
PDB header:solute-binding protein
Chain: C: PDB Molecule:putative extracellular solute-binding protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bordetella bronchiseptica, target efi-510038 (bb2442), with bound3 (r)-mandelate and (s)-mandelate
94c4p1lA_
not modelled 97.3 14
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085,3 with bound d-glucuronate, spg i213
95c2f5xC_
not modelled 97.3 14
PDB header:transport protein
Chain: C: PDB Molecule:bugd;
PDBTitle: structure of periplasmic binding protein bugd
96c4oz9A_
not modelled 97.3 12
PDB header:lyase
Chain: A: PDB Molecule:membrane-bound lytic murein transglycosylase f;
PDBTitle: crystal structure of mltf from pseudomonas aeruginosa complexed with2 isoleucine
97c4nn3A_
not modelled 97.3 13
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio salexigens (desal_2161), target efi-510109, with bound3 orotic acid
98c4n91A_
not modelled 97.3 14
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 anaerococcus prevotii dsm 20548 (apre_1383), target efi-510023, with3 bound alpha/beta d-glucuronate
99c4x8rB_
not modelled 97.2 10
PDB header:solute-binding protein
Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with3 bound glucuronate
100c4oanB_
not modelled 97.2 9
PDB header:membrane protein/protein transport
Chain: B: PDB Molecule:trap dicarboxylate transporter dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_2686), target efi-510221, with3 density modeled as (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-4 acetolactate)
101c6hkeB_
not modelled 97.2 16
PDB header:transport protein
Chain: B: PDB Molecule:possible tctc subunit of the tripartite tricarboxylate
PDBTitle: matc (rpa3494) from rhodopseudomonas palustris with bound malate
102d1sbpa_
not modelled 97.2 13
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
103c4nf0E_
not modelled 97.2 13
PDB header:transport protein
Chain: E: PDB Molecule:probable c4-dicarboxylate-binding protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 pseudomonas aeruginosa pao1 (pa4616), target efi-510182, with bound3 l-malate
104c4zdmA_
not modelled 97.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:glutamate receptor kainate-like protein;
PDBTitle: pleurobrachia bachei iglur3 lbd glycine complex
105c4pbhA_
not modelled 97.1 15
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit, putative;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ruegeria pomeroyi dss-3 (spo1773, target efi-510260) with bound3 benzoic acid
106c2vpnB_
not modelled 97.0 11
PDB header:transport
Chain: B: PDB Molecule:periplasmic substrate binding protein;
PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata
107c4magA_
not modelled 97.0 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:sialic acid binding protein;
PDBTitle: crystal structure of the periplasmic sialic acid binding protein from2 vibrio cholerea
108c4ovqA_
not modelled 97.0 13
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate abc transporter, substrate-binding
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 roseobacter denitrificans, target efi-510230, with bound beta-d-3 glucuronate
109c4pe3A_
not modelled 96.9 14
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter-dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3620, target efi-510199), apo open3 structure
110d2fyia1
not modelled 96.9 10
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
111c4ovpB_
not modelled 96.9 15
PDB header:solute-binding protein
Chain: B: PDB Molecule:c4-dicarboxylate transport system substrate-binding
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 sulfitobacter sp. nas-14.1, target efi-510292, with bound alpha-d-3 manuronate
112c6onpA_
not modelled 96.9 12
PDB header:unknown function
Chain: A: PDB Molecule:periplasmic binding protein xoxj;
PDBTitle: crystal structure of periplasmic binding protein xoxj from2 methylobacterium extorquens am1
113c4mnpA_
not modelled 96.8 10
PDB header:sugar binding protein
Chain: A: PDB Molecule:n-acetylneuraminate-binding protein;
PDBTitle: structure of the sialic acid binding protein from fusobacterium2 nucleatum subsp. nucleatum atcc 25586
114c3fxbB_
not modelled 96.8 11
PDB header:transport protein
Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of the ectoine-binding protein ueha
115c4nguA_
not modelled 96.8 10
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio alaskensis g20 (dde_1548), target efi-510103, with3 bound d-ala-d-ala
116c4x9tA_
not modelled 96.8 15
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein upf0065;
PDBTitle: crystal structure of a tctc solute binding protein from polaromonas2 (bpro_3516, target efi-510338), no ligand
117c4n6kA_
not modelled 96.8 10
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter-dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio salexigens dsm2638, target efi-510113 (desal_0342),3 complex with diglycerolphosphate
118c4xeqC_
not modelled 96.8 13
PDB header:transport protein
Chain: C: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 desulfovibrio vulgaris (deval_0042, target efi-510114) bound to3 copurified (r)-pantoic acid
119c2pfyA_
not modelled 96.7 11
PDB header:transport protein
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
120c4gd5B_
not modelled 96.6 9
PDB header:transport protein
Chain: B: PDB Molecule:phosphate abc transporter, phosphate-binding protein;
PDBTitle: x-ray crystal structure of a putative phosphate abc transporter2 substrate-binding protein with bound phosphate from clostridium3 perfringens

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below