Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3760_(-)_4205716_4206018
DateFri Aug 9 18:20:46 BST 2019
Unique Job ID5e155a7092253815
SequenceVPGSVPGKAP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.338 Y:73.672 Z:23.039
Model (left) based on template c2kncB_
Top template information
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
Confidence and coverage
Confidence: 54.8% Coverage: 43%
43 residues ( 43% of your sequence) have been modelled with 54.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2kncB_
54.8 21
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
2c2n2aA_
39.4 26
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
3d1kf6d_
25.6 37
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
4c5fv8B_
24.7 17
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
5c5fv8A_
24.6 17
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
6c5ldxZ_
18.7 9
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class3.
7c5lc5Z_
18.7 9
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class2
8c5ldwZ_
18.7 9
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class1
9c2ks1A_
17.3 24
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
10c2n9bB_
17.1 24
PDB header:motor protein/transcription
Chain: B: PDB Molecule:unconventional myosin-x, general control protein gcn4
PDBTitle: solution nmr structure of antiparallel myosin-10:gcn4 tandem coiled-2 coil
11c3arcl_
15.6 33
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
12c2yvxD_
15.5 11
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
13c2jwaA_
15.4 24
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
14c2lw9A_
14.7 19
PDB header:motor protein
Chain: A: PDB Molecule:unconventionnal myosin-x;
PDBTitle: nmr solution structure of myo10 anti-cc
15d1qled_
14.4 21
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
16c1cagA_
12.7 44
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
17c1cagC_
12.7 44
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
18c6gcsW_
12.4 13
PDB header:oxidoreductase
Chain: W: PDB Molecule:nb6m subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
19c6nd1E_
11.9 22
PDB header:protein transport
Chain: E: PDB Molecule:translocation protein sec66;
PDBTitle: cryoem structure of the sec complex from yeast
20c1cgdA_
11.8 44
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
21c1cgdC_
not modelled 11.8 44
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
22c1cgdB_
not modelled 11.8 44
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
23c1cagB_
not modelled 11.8 44
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
24c5lnkq_
not modelled 11.5 9
PDB header:oxidoreductase
Chain: Q: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
25c6c6lN_
not modelled 10.8 30
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
26c5o31Z_
not modelled 10.0 9
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: mitochondrial complex i in the deactive state
27d1m56d_
not modelled 9.6 21
Fold:Single transmembrane helix
Superfamily:Bacterial aa3 type cytochrome c oxidase subunit IV
Family:Bacterial aa3 type cytochrome c oxidase subunit IV
28c2k1lA_
not modelled 9.5 32
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
29c2k1kB_
not modelled 9.5 32
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
30c2k1lB_
not modelled 9.5 32
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
31c2k1kA_
not modelled 9.5 32
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
32c2pcoA_
not modelled 9.2 38
PDB header:toxin
Chain: A: PDB Molecule:latarcin-1;
PDBTitle: spatial structure and membrane permeabilization for2 latarcin-1, a spider antimicrobial peptide
33c2mmvA_
not modelled 7.6 11
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein zapa;
PDBTitle: zapa mutant dimer from geobacillus stearothermophilus
34c2mfrA_
not modelled 7.6 26
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
35c6hraD_
not modelled 7.2 36
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e1 outward-facing state2 (state 1)
36c5mrwL_
not modelled 7.2 36
PDB header:hydrolase
Chain: L: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
37c5mrwH_
not modelled 7.2 36
PDB header:hydrolase
Chain: H: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
38c5mrwD_
not modelled 7.2 36
PDB header:hydrolase
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
39c2jo1A_
not modelled 7.2 15
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
40c5jb30_
not modelled 6.7 0
PDB header:translation
Chain: 0: PDB Molecule:30s ribosomal protein el41;
PDBTitle: cryo-em structure of a full archaeal ribosomal translation initiation2 complex in the p-remote conformation
41c5jbh0_
not modelled 6.7 0
PDB header:transcription
Chain: 0: PDB Molecule:30s ribosomal protein el41;
PDBTitle: cryo-em structure of a full archaeal ribosomal translation initiation2 complex in the p-in conformation
42c3j21h_
not modelled 6.6 0
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l11p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
43c3j44h_
not modelled 6.6 0
PDB header:ribosome/protein transport
Chain: H: PDB Molecule:50s ribosomal protein l11p;
PDBTitle: structure of the methanococcus jannaschii ribosome-secyebeta channel2 complex (50s ribosomal subunit)
44c4gn0D_
not modelled 6.6 15
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
45c5kk2E_
not modelled 6.0 12
PDB header:membrane protein, transport protein, sig
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-2 subunit;
PDBTitle: architecture of fully occupied glua2 ampa receptor - tarp complex2 elucidated by single particle cryo-electron microscopy
46c2micA_
not modelled 5.8 19
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
47c2micB_
not modelled 5.8 19
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
48c3b2cI_
not modelled 5.7 35
PDB header:structural protein
Chain: I: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
49c3b2cA_
not modelled 5.7 35
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
50c3b2cH_
not modelled 5.7 35
PDB header:structural protein
Chain: H: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
51c3b2cC_
not modelled 5.7 35
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
52c1ei8A_
not modelled 5.7 35
PDB header:contractile protein
Chain: A: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
53c2klwC_
not modelled 5.7 35
PDB header:de novo protein
Chain: C: PDB Molecule:(pog)10;
PDBTitle: solution structure of an abc collagen heterotrimer reveals a2 single-register helix stabilized by electrostatic3 interactions
54c3b2cG_
not modelled 5.7 35
PDB header:structural protein
Chain: G: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
55c1ei8B_
not modelled 5.7 35
PDB header:contractile protein
Chain: B: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
56c3b2cF_
not modelled 5.7 35
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
57c1ei8F_
not modelled 5.7 35
PDB header:contractile protein
Chain: F: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
58c3b2cE_
not modelled 5.7 35
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
59c3b2cD_
not modelled 5.7 35
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
60c3b2cB_
not modelled 5.7 35
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of the collagen triple helix model [{pro-hyp(r)-2 gly}4-{hyp(s)-pro-gly}2-{pro-hyp(r)-gly}4]3
61c1ei8D_
not modelled 5.7 35
PDB header:contractile protein
Chain: D: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide
62c1ei8E_
not modelled 5.7 35
PDB header:contractile protein
Chain: E: PDB Molecule:collagen-like peptide (pro-hyp-gly)4-pg-(pro-hyp-
PDBTitle: structural consequences of a discontinuity in the repeating2 tripeptide sequence of a collagen-like triple-helical3 peptide

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Transmembrane helix prediction 

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