Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3763_(lpqH)_4209225_4209704
DateFri Aug 9 18:20:46 BST 2019
Unique Job ID290e532961e7abec
SequenceVKRGLTVAVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.295 Y:33.364 Z:41.742
Model (left) based on template c4xinB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:lpqh orthologue;
PDBTitle: x-ray crystal structure of an lpqh orthologue from mycobacterium avium
Confidence and coverage
Confidence:100.0% Coverage: 71%
113 residues ( 71% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xinB_
100.0 34
PDB header:unknown function
Chain: B: PDB Molecule:lpqh orthologue;
PDBTitle: x-ray crystal structure of an lpqh orthologue from mycobacterium avium
2c4zjmA_
100.0 90
PDB header:unknown function
Chain: A: PDB Molecule:lipoprotein lpqh;
PDBTitle: crystal structure of mycobacterium tuberculosis lpqh (rv3763)
3c6qt9Y_
61.1 13
PDB header:virus
Chain: Y: PDB Molecule:orf 31;
PDBTitle: cryo-em structure of sh1 full particle.
4c2g16A_
28.6 15
PDB header:luminescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of s65a y66s gfp variant after backbone2 fragmentation
5d1wv3a1
25.5 44
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:EssC N-terminal domain-like
6c2gw4C_
21.2 18
PDB header:luminescent protein
Chain: C: PDB Molecule:kaede;
PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form
7d2icha1
20.1 19
Fold:AttH-like
Superfamily:AttH-like
Family:AttH-like
8c6fx6A_
19.5 11
PDB header:unknown function
Chain: A: PDB Molecule:satie-ted;
PDBTitle: thioester domain of the staphylococcus aureus tie protein
9c6h9cb_
17.7 18
PDB header:virus
Chain: B: PDB Molecule:vp4;
PDBTitle: cryo-em structure of archaeal extremophilic internal membrane-2 containing haloarcula californiae icosahedral virus 1 (hciv-1) at3 3.74 angstroms resolution.
10c3najA_
17.3 19
PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin-8;
PDBTitle: crystal structure of a protease-resistant mutant form of human2 galectin-8
11c3ff7B_
16.5 18
PDB header:cell adhesion/immune system
Chain: B: PDB Molecule:epithelial cadherin;
PDBTitle: structure of nk cell receptor klrg1 bound to e-cadherin
12c1vraA_
15.6 19
PDB header:transferase
Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
13c2mraA_
15.2 20
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or459;
PDBTitle: solution nmr structure of de novo designed protein, northeast2 structural genomics consortium (nesg) target or459
14c3wp6A_
14.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:cdbfv;
PDBTitle: the complex structure of cdbfv e109a with xylotriose
15c3lf4A_
13.7 18
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent timer precursor blue102;
PDBTitle: crystal structure of fluorescent timer precursor blue102
16c3mxnB_
13.4 14
PDB header:replication
Chain: B: PDB Molecule:recq-mediated genome instability protein 2;
PDBTitle: crystal structure of the rmi core complex
17c3c12A_
12.8 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
18c2ovsB_
12.7 4
PDB header:gene regulation, ligand binding protein
Chain: B: PDB Molecule:l0044;
PDBTitle: crystal strcuture of a type three secretion system protein
19c4m02A_
12.6 22
PDB header:calcium binding protein
Chain: A: PDB Molecule:serine-rich adhesin for platelets;
PDBTitle: middle fragment(residues 494-663) of the binding region of srap
20d1mywa_
11.4 11
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
21c3rwaE_
not modelled 9.9 21
PDB header:fluorescent protein
Chain: E: PDB Molecule:fluorescent protein fp480;
PDBTitle: crystal structure of circular-permutated mkate
22d2go8a1
not modelled 9.7 32
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:PG130-like
23d1sgoa_
not modelled 9.5 29
Fold:N domain of copper amine oxidase-like
Superfamily:Hypothetical protein c14orf129, hspc210
Family:Hypothetical protein c14orf129, hspc210
24d1kp5a_
not modelled 9.4 15
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
25c2l7yA_
not modelled 9.1 20
PDB header:structural protein
Chain: A: PDB Molecule:putative endo-beta-n-acetylglucosaminidase;
PDBTitle: solution structure of a putative surface protein
26c2a56A_
not modelled 9.0 38
PDB header:luminescent protein
Chain: A: PDB Molecule:gfp-like non-fluorescent chromoprotein fp595 chain 1;
PDBTitle: fluorescent protein asfp595, a143s, on-state, 5min irradiation
27c2jtyA_
not modelled 8.5 24
PDB header:structural protein
Chain: A: PDB Molecule:type-1 fimbrial protein, a chain;
PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus
28c5az3A_
not modelled 8.1 21
PDB header:transport protein
Chain: A: PDB Molecule:abc-type transporter, periplasmic component;
PDBTitle: crystal structure of heme binding protein hmut
29c2q9kA_
not modelled 8.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
30c3akoG_
not modelled 8.0 11
PDB header:fluorescent protein
Chain: G: PDB Molecule:venus;
PDBTitle: crystal structure of the reassembled venus
31c4p7hB_
not modelled 8.0 21
PDB header:motor/fluorescent protein
Chain: B: PDB Molecule:myosin-7,green fluorescent protein;
PDBTitle: structure of human beta-cardiac myosin motor domain::gfp chimera
32c4gpvB_
not modelled 7.9 14
PDB header:cell adhesion
Chain: B: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bacegg_00536)2 from bacteroides eggerthii dsm 20697 at 1.67 a resolution
33c2mblA_
not modelled 7.9 39
PDB header:de novo protein
Chain: A: PDB Molecule:top7 fold protein top7m13;
PDBTitle: solution nmr structure of de novo designed top7 fold protein top7m13,2 northeast structural genomics consortium (nesg) target or33
34c4uznA_
not modelled 7.7 35
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-glucanase (celulase b);
PDBTitle: the native structure of the family 46 carbohydrate-binding2 module (cbm46) of endo-beta-1,4-glucanase b (cel5b) from3 bacillus halodurans
35c3u0kA_
not modelled 7.5 25
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
36d1rx0a2
not modelled 7.1 50
Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
37c5u75A_
not modelled 7.1 29
PDB header:toxin
Chain: A: PDB Molecule:enterotoxin-like toxin x;
PDBTitle: the structure of staphylococcal enterotoxin-like x (selx), a unique2 superantigen
38c3t9gB_
not modelled 7.0 24
PDB header:lyase
Chain: B: PDB Molecule:pectate lyase;
PDBTitle: the crystal structure of family 3 pectate lyase from2 caldicellulosiruptor bescii
39c4i2yB_
not modelled 6.9 18
PDB header:fluorescent protein
Chain: B: PDB Molecule:rgeco1;
PDBTitle: crystal structure of the genetically encoded calcium indicator rgeco1
40c2m5sA_
not modelled 6.6 19
PDB header:viral protein
Chain: A: PDB Molecule:coat protein;
PDBTitle: high-resolution nmr structure and cryo-em imaging support multiple2 functional roles for the accessory i-domain of phage p22 coat protein
41c2bgpA_
not modelled 6.5 12
PDB header:carbohydrate binding protein
Chain: A: PDB Molecule:endo-b1,4-mannanase 5c;
PDBTitle: mannan binding module from man5c in bound conformation
42d2d29a2
not modelled 6.5 26
Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
43c4anjA_
not modelled 6.4 15
PDB header:motor protein/metal-bindng protein
Chain: A: PDB Molecule:unconventional myosin-vi, green fluorescent protein;
PDBTitle: myosin vi (mdinsert2-gfp fusion) pre-powerstroke state (mg.adp.alf4)
44c3evpA_
not modelled 6.3 14
PDB header:signaling protein
Chain: A: PDB Molecule:green fluorescent protein,green fluorescent protein;
PDBTitle: crystal structure of circular-permutated egfp
45c3k25B_
not modelled 6.0 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:slr1438 protein;
PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112
46c4l3aA_
not modelled 5.9 18
PDB header:cell invasion
Chain: A: PDB Molecule:internalin k;
PDBTitle: crystal structure of internalin k (inlk) from listeria monocytogenes
47c3uv0B_
not modelled 5.7 17
PDB header:protein binding
Chain: B: PDB Molecule:mutator 2, isoform b;
PDBTitle: crystal structure of the drosophila mu2 fha domain
48c3uv1B_
not modelled 5.6 13
PDB header:allergen
Chain: B: PDB Molecule:der f 7 allergen;
PDBTitle: crystal structure a major allergen from dust mite
49c6efrA_
not modelled 5.3 18
PDB header:choline-binding protein
Chain: A: PDB Molecule:inicsnfr 1.0, a genetically encoded nicotine biosensor,
PDBTitle: crystal structure of inicsnfr 1.0
50c3h3iA_
not modelled 5.3 56
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative lipid binding protein;
PDBTitle: crystal structure of a putative lipid binding protein (bt_2261) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
51c4ktoB_
not modelled 5.2 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:isovaleryl-coa dehydrogenase;
PDBTitle: crystal structure of a putative isovaleryl-coa dehydrogenase (psi-2 nysgrc-012251) from sinorhizobium meliloti 1021
52c6dgvA_
not modelled 5.1 18
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent gaba sensor precursor;
PDBTitle: igabasnfr fluorescent gaba sensor precursor
53c4ndkA_
not modelled 5.1 14
PDB header:fluorescent protein, de novo protein
Chain: A: PDB Molecule:e23p-yfp, gfp-like fluorescent chromoprotein fp506,
PDBTitle: crystal structure of a computational designed engrailed homeodomain2 variant fused with yfp

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