Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3766_(-)_4212471_4213160
DateFri Aug 9 18:20:47 BST 2019
Unique Job IDaead0f5bfba05a93
SequenceMRSAFDSGRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.121 Y:43.581 Z:36.960
Model (left) based on template c2nw0B_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:plyb;
PDBTitle: crystal structure of a lysin
Confidence and coverage
Confidence: 99.3% Coverage: 58%
132 residues ( 58% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2nw0B_
99.3 20
PDB header:hydrolase
Chain: B: PDB Molecule:plyb;
PDBTitle: crystal structure of a lysin
2c2wagA_
99.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme, putative;
PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis.
3c4jz5A_
99.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:gp26;
PDBTitle: high-resolution structure of catalytic domain of endolysin ply40 from2 bacteriophage p40 of listeria monocytogenes
4c4krtA_
99.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:autolytic lysozyme;
PDBTitle: x-ray structure of endolysin from clostridium perfringens phage2 phism101
5d1jfxa_
98.9 24
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
6c4ff5A_
98.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase 25;
PDBTitle: structure basis of a novel virulence factor ghip a glycosyl hydrolase2 25 of streptococcus pneumoniae participating in host cell invasion
7c5a6sA_
98.7 18
PDB header:structural protein
Chain: A: PDB Molecule:endolysin;
PDBTitle: crystal structure of the ctp1l endolysin reveals how its2 activity is regulated by a secondary translation product
8c5jipB_
98.5 25
PDB header:hydrolase
Chain: B: PDB Molecule:cortical-lytic enzyme;
PDBTitle: crystal structure of the clostridium perfringens spore cortex lytic2 enzyme slem
9c2x8rE_
98.4 25
PDB header:hydrolase
Chain: E: PDB Molecule:glycosyl hydrolase;
PDBTitle: the structure of a family gh25 lysozyme from aspergillus2 fumigatus
10c2wwcA_
96.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:1,4-beta-n-acetylmuramidase;
PDBTitle: 3d-structure of the modular autolysin lytc from2 streptococcus pneumoniae in complex with synthetic3 peptidoglycan ligand
11d2j8ga2
95.3 17
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:1,4-beta-N-acetylmuraminidase
12c2j8fA_
94.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: crystal structure of the modular cpl-1 endolysin complexed with a2 peptidoglycan analogue (e94q mutant in complex with a disaccharide-3 pentapeptide)
13c4b1pJ_
60.8 69
PDB header:transferase/dna
Chain: J: PDB Molecule:rna polymerase subunit 13;
PDBTitle: archaeal rnap-dna binary complex at 4.32ang
14c4aybQ_
60.5 69
PDB header:transferase
Chain: Q: PDB Molecule:dna-directed rna polymerase;
PDBTitle: rnap at 3.2ang
15d1vaza_
59.2 23
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
16d1ss6a_
53.5 23
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
17c4b1oQ_
49.8 69
PDB header:transferase/dna
Chain: Q: PDB Molecule:rna polymerase subunit 13;
PDBTitle: archaeal rnap-dna binary complex at 4.32ang
18c2y0sJ_
49.6 69
PDB header:transferase
Chain: J: PDB Molecule:rna polymerase subunit 13;
PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in p21 space2 group
19c2y0sQ_
49.6 69
PDB header:transferase
Chain: Q: PDB Molecule:rna polymerase subunit 13;
PDBTitle: crystal structure of sulfolobus shibatae rna polymerase in p21 space2 group
20c4e0uB_
46.8 39
PDB header:transferase
Chain: B: PDB Molecule:cyclic dipeptide n-prenyltransferase;
PDBTitle: crystal structure of cdpnpt in complex with thiolodiphosphate and (s)-2 benzodiazependione
21c3hkzZ_
not modelled 43.7 62
PDB header:transferase
Chain: Z: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
22c2waqQ_
not modelled 42.6 69
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-directed rna2 polymerase
23c3hkzY_
not modelled 40.6 62
PDB header:transferase
Chain: Y: PDB Molecule:dna-directed rna polymerase subunit 13;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
24c1q88B_
not modelled 37.9 35
PDB header:dna binding protein
Chain: B: PDB Molecule:39 kda initiator binding protein;
PDBTitle: crystal structure of the c-domain of the t.vaginalis inr2 binding protein, ibp39 (monoclinic form)
25c3vwbA_
not modelled 37.9 13
PDB header:transcription/dna
Chain: A: PDB Molecule:virulence regulon transcriptional activator virb;
PDBTitle: crystal structure of virb core domain (se-met derivative) complexed2 with the cis-acting site (5-bru modifications) upstream icsb promoter
26c5yaaD_
not modelled 37.5 11
PDB header:hydrolase
Chain: D: PDB Molecule:meiosis regulator and mrna stability factor 1;
PDBTitle: crystal structure of marf1 nyn domain from mus musculus
27c3i4zA_
not modelled 37.4 34
PDB header:transferase
Chain: A: PDB Molecule:tryptophan dimethylallyltransferase;
PDBTitle: crystal structure of the dimethylallyl tryptophan synthase fgapt2 from2 aspergillus fumigatus
28d1q88a_
not modelled 37.3 35
Fold:39 kda initiator binding protein, IBP39, C-terminal domains
Superfamily:39 kda initiator binding protein, IBP39, C-terminal domains
Family:39 kda initiator binding protein, IBP39, C-terminal domains
29c3o2kA_
not modelled 35.6 21
PDB header:transferase
Chain: A: PDB Molecule:brevianamide f prenyltransferase;
PDBTitle: crystal structure of brevianamide f prenyltransferase complexed with2 brevianamide f and dimethylallyl s-thiolodiphosphate
30c4aczB_
not modelled 32.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:endo-alpha-mannosidase;
PDBTitle: structure of the gh99 endo-alpha-mannosidase from2 bacteroides thetaiotaomicron
31c5kdaA_
not modelled 32.4 33
PDB header:transferase
Chain: A: PDB Molecule:aromatic prenyltransferase;
PDBTitle: crystal structure of the aromatic prenyltransferase atapt from2 aspergillus terreus a8-4 in complex with dimethylallyl s-3 thiolodiphosphate and genistein
32c3fdgA_
not modelled 32.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19;
PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19
33d1vcla3
not modelled 24.8 50
Fold:Hemolytic lectin CEL-III, C-terminal domain
Superfamily:Hemolytic lectin CEL-III, C-terminal domain
Family:Hemolytic lectin CEL-III, C-terminal domain
34c3d0jA_
not modelled 24.3 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ca_c3497;
PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824
35c4m1pA_
not modelled 24.0 27
PDB header:transcription repressor
Chain: A: PDB Molecule:copper-sensitive operon repressor (csor);
PDBTitle: crystal structure of the copper-sensing repressor csor with cu(i) from2 geobacillus thermodenitrificans ng80-2
36c2mkfA_
not modelled 23.4 31
PDB header:signaling protein
Chain: A: PDB Molecule:brca1-a complex subunit rap80;
PDBTitle: solution structure of the e81 deletion mutant of the tandem uims of2 rap80
37c4z80D_
not modelled 21.7 63
PDB header:membrane protein
Chain: D: PDB Molecule:cytoadherence-linked asexual protein;
PDBTitle: crystal structure of toxoplasma gondii ama4 di-dii-egf1 in complex2 with a 33 aa tgron2l1 peptide
38c3kgbA_
not modelled 21.5 17
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase 1/2;
PDBTitle: crystal structure of thymidylate synthase 1/2 from encephalitozoon2 cuniculi at 2.2 a resolution
39c4z80C_
not modelled 21.5 63
PDB header:membrane protein
Chain: C: PDB Molecule:cytoadherence-linked asexual protein;
PDBTitle: crystal structure of toxoplasma gondii ama4 di-dii-egf1 in complex2 with a 33 aa tgron2l1 peptide
40c4ad2C_
not modelled 20.7 14
PDB header:hydrolase
Chain: C: PDB Molecule:glycosyl hydrolase family 71;
PDBTitle: structure of the gh99 endo-alpha-mannosidase from bacteroides2 xylanisolvens in complex with glucose-1,3-isofagomine
41c1cixA_
not modelled 20.4 32
PDB header:antimicrobial peptide
Chain: A: PDB Molecule:protein (tachystatin a);
PDBTitle: three-dimensional structure of antimicrobial peptide2 tachystatin a isolated from horseshoe crab
42d1cixa_
not modelled 20.4 32
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
43c2ppxA_
not modelled 19.9 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
44d2ppxa1
not modelled 19.9 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
45c3ix6B_
not modelled 19.7 23
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of thymidylate synthase thya from brucella2 melitensis
46c5j9iH_
not modelled 19.6 13
PDB header:antitoxin
Chain: H: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higa2 antitoxin c-terminal domain
47c4c8qH_
not modelled 19.6 19
PDB header:transcription
Chain: H: PDB Molecule:dna topoisomerase 2-associated protein pat1;
PDBTitle: crystal structure of the yeast lsm1-7-pat1 complex
48d1w3ia_
not modelled 19.4 42
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
49c5jaaB_
not modelled 19.2 13
PDB header:toxin
Chain: B: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higba2 toxin-antitoxin complex
50d1f28a_
not modelled 18.6 13
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
51d1r69a_
not modelled 18.4 36
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
52d1bkpa_
not modelled 18.1 20
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
53c3fmyA_
not modelled 18.1 19
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
54c4dq1A_
not modelled 17.9 13
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase;
PDBTitle: thymidylate synthase from staphylococcus aureus.
55d1qzfa2
not modelled 17.9 17
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
56c3v8hB_
not modelled 17.6 7
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of thymidylate synthase from burkholderia2 thailandensis
57c6e11F_
not modelled 17.3 86
PDB header:protein transport
Chain: F: PDB Molecule:exported protein 2;
PDBTitle: ptex core complex in the resetting (compact) state
58d1hvya_
not modelled 17.2 17
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
59d1uf2c2
not modelled 16.9 44
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Top domain of virus capsid protein
60d2auwa1
not modelled 16.8 33
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
61d2croa_
not modelled 16.8 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
62c4iswB_
not modelled 16.7 17
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of phosphorylated c.elegans thymidylate synthase in2 complex with dump
63d1seja2
not modelled 16.7 17
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
64d2g8oa1
not modelled 16.6 20
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
65c5mmjw_
not modelled 16.5 19
PDB header:ribosome
Chain: W: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
66d1sq8a_
not modelled 16.3 36
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
67d2tsra_
not modelled 16.3 13
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
68c4g9uD_
not modelled 16.3 13
PDB header:transferase
Chain: D: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of trichinella spiralis thymidylate synthase2 complexed with dump
69d1ug2a_
not modelled 16.2 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
70c2j0fC_
not modelled 16.0 27
PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
71c6h4eB_
not modelled 15.6 35
PDB header:lyase
Chain: B: PDB Molecule:putative n-acetylneuraminate lyase;
PDBTitle: proteus mirabilis n-acetylneuraminate lyase
72c2aazG_
not modelled 15.6 17
PDB header:transferase
Chain: G: PDB Molecule:thymidylate synthase;
PDBTitle: cryptococcus neoformans thymidylate synthase complexed with substrate2 and an antifolate
73d2a6ca1
not modelled 15.4 50
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
74d1utxa_
not modelled 15.4 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
75c6aujC_
not modelled 15.3 20
PDB header:transferase
Chain: C: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of thymidylate synthase from elizabethkingia2 anophelis nuhp1
76c4pu4C_
not modelled 15.1 39
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
77d1tisa_
not modelled 14.9 13
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
78c1zx4B_
not modelled 14.9 27
PDB header:cell cycle
Chain: B: PDB Molecule:plasmid partition par b protein;
PDBTitle: structure of parb bound to dna
79c2ebkA_
not modelled 14.5 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:rwd domain-containing protein 3;
PDBTitle: solution structure of the rwd domain of human rwd domain2 containing protein 3
80c3pqeD_
not modelled 14.5 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: crystal structure of l-lactate dehydrogenase from bacillus subtilis2 with h171c mutation
81c2kt9A_
not modelled 14.3 11
PDB header:ribosomal protein
Chain: A: PDB Molecule:probable 30s ribosomal protein psrp-3;
PDBTitle: solution nmr structure of probable 30s ribosomal protein2 psrp-3 (ycf65-like protein) from synechocystis sp. (strain3 pcc 6803), northeast structural genomics consortium target4 target sgr46
82d1tswa_
not modelled 14.3 19
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
83d1j3kc_
not modelled 13.9 13
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
84c2hpgB_
not modelled 13.3 13
PDB header:ligand binding protein
Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding
PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein
85d1xrsb2
not modelled 13.2 67
Fold:Dodecin subunit-like
Superfamily:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
Family:D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain
86d1ldma2
not modelled 13.0 25
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
87c3qj7D_
not modelled 13.0 21
PDB header:transferase
Chain: D: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis thymidylate2 synthase (thya) bound to dump
88c5c54D_
not modelled 12.9 31
PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase/n-acetylneuraminate lyase;
PDBTitle: crystal structure of a novel n-acetylneuraminic acid lyase from2 corynebacterium glutamicum
89d1pkxa2
not modelled 12.9 39
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
90c4bpsA_
not modelled 12.8 30
PDB header:hydrolase
Chain: A: PDB Molecule:fkbo;
PDBTitle: crystal structure of chorismatase at 1.08 angstrom resolution.
91c3egyX_
not modelled 12.7 24
PDB header:transferase
Chain: X: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of human thymidyalte synthase a191k with loop 181-2 197 stabilized in the inactive conformation
92c2jvlA_
not modelled 12.7 21
PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
93c3vx8C_
not modelled 12.6 30
PDB header:ligase
Chain: C: PDB Molecule:autophagy-related protein 3;
PDBTitle: crystal structure of arabidopsis thaliana atg7ntd-atg3 complex
94c2wb1Q_
not modelled 12.2 67
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
95d1b5ea_
not modelled 12.0 20
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
96c5z7iC_
not modelled 12.0 41
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra dna-binding domain(dbd)in complex with2 unmethylated dsdna
97c2vc6A_
not modelled 11.8 19
PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of mosa from s. meliloti with pyruvate bound
98c3omtA_
not modelled 11.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
99d1z84a1
not modelled 11.8 13
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase

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