Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3769_(-)_4214793_4215065
DateFri Aug 9 18:20:47 BST 2019
Unique Job IDf626008e8ad40063
SequenceVTTLKELGAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.395 Y:26.982 Z:104.770
Model (left) based on template c5appB_
Top template information
PDB header:membrane protein
Chain: B: PDB Molecule:general control protein gcn4, outer membrane protein 100;
PDBTitle: actinobacillus actinomycetemcomitans omp100 residues 133-198 fused to2 gcn4 adaptors
Confidence and coverage
Confidence: 91.3% Coverage: 76%
68 residues ( 76% of your sequence) have been modelled with 91.3% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5appB_
91.3 31
PDB header:membrane protein
Chain: B: PDB Molecule:general control protein gcn4, outer membrane protein 100;
PDBTitle: actinobacillus actinomycetemcomitans omp100 residues 133-198 fused to2 gcn4 adaptors
2c3pltB_
52.8 15
PDB header:structural protein
Chain: B: PDB Molecule:sphingolipid long chain base-responsive protein lsp1;
PDBTitle: crystal structure of lsp1 from saccharomyces cerevisiae
3c3bj4B_
51.3 48
PDB header:signaling protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt
PDBTitle: the kcnq1 (kv7.1) c-terminus, a multi-tiered scaffold for2 subunit assembly and protein interaction
4c1unuB_
40.1 33
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
5c1unuA_
40.1 33
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
6c1ij1B_
31.5 37
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12) position
7c1ij1C_
31.5 37
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12) position
8c1ij1A_
31.5 37
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: gcn4-pvlt coiled-coil trimer with threonine at the d(12) position
9c3hfeC_
30.2 57
PDB header:transport protein
Chain: C: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1;
PDBTitle: a trimeric form of the kv7.1 a domain tail
10c1uo5A_
27.8 30
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
11c1uo5B_
27.8 30
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
12c1untA_
26.9 30
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
13c1untB_
26.1 30
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
14c1ij0C_
21.5 33
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position
15c1ij0A_
21.5 33
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position
16c1ij0B_
21.5 33
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: coiled coil trimer gcn4-pvls ser at buried d position
17c6fiaB_
21.4 14
PDB header:rna binding protein
Chain: B: PDB Molecule:line-1 retrotransposable element orf1 protein;
PDBTitle: structure of the human line-1 orf1p coiled coil domain
18c1junB_
21.2 31
PDB header:transcription regulation
Chain: B: PDB Molecule:c-jun homodimer;
PDBTitle: nmr study of c-jun homodimer
19c1uo3B_
20.4 30
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
20d2o3la1
18.5 45
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
21c2yonA_
not modelled 17.8 50
PDB header:signaling protein
Chain: A: PDB Molecule:sensory box protein;
PDBTitle: solution nmr structure of the c-terminal extension of two bacterial2 light, oxygen, voltage (lov) photoreceptor proteins from3 pseudomonas putida
22d2hh6a1
not modelled 17.0 32
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
23c1gclC_
not modelled 16.9 30
PDB header:leucine zipper
Chain: C: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
24c1gclD_
not modelled 16.9 30
PDB header:leucine zipper
Chain: D: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
25c1gclB_
not modelled 16.9 30
PDB header:leucine zipper
Chain: B: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
26c1gclA_
not modelled 16.9 30
PDB header:leucine zipper
Chain: A: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
27c1w5iA_
not modelled 15.5 30
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: aba does not affect topology of pli.
28c1uo2A_
not modelled 15.5 30
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
29c1uo2B_
not modelled 15.0 30
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
30c1w5iB_
not modelled 15.0 30
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: aba does not affect topology of pli.
31c4v1au_
not modelled 14.6 17
PDB header:ribosome
Chain: U: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
32d1tc3c_
not modelled 14.5 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
33c1unvB_
not modelled 14.5 29
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
34c1gcmA_
not modelled 14.0 26
PDB header:transcription regulation
Chain: A: PDB Molecule:gcn4p-ii;
PDBTitle: gcn4 leucine zipper core mutant p-li
35c1bb1A_
not modelled 13.0 38
PDB header:de novo protein design
Chain: A: PDB Molecule:designed, thermostable heterotrimeric coiled
PDBTitle: crystal structure of a designed, thermostable2 heterotrimeric coiled coil
36c5u0pU_
not modelled 13.0 10
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
37c1gcmB_
not modelled 12.8 26
PDB header:transcription regulation
Chain: B: PDB Molecule:gcn4p-ii;
PDBTitle: gcn4 leucine zipper core mutant p-li
38c1gcmC_
not modelled 12.3 26
PDB header:transcription regulation
Chain: C: PDB Molecule:gcn4p-ii;
PDBTitle: gcn4 leucine zipper core mutant p-li
39c2ccfA_
not modelled 12.0 26
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: antiparallel configuration of pli e20s
40c5fv8B_
not modelled 11.7 60
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
41c5fv8A_
not modelled 11.5 60
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
42c2cceB_
not modelled 11.4 26
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: parallel configuration of pli e20s
43c2cceA_
not modelled 11.4 26
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: parallel configuration of pli e20s
44c1unxA_
not modelled 11.0 30
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
45c1unwB_
not modelled 10.4 30
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
46c1unxB_
not modelled 9.7 30
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
47c4j4aK_
not modelled 9.6 43
PDB header:de novo protein
Chain: K: PDB Molecule:cortexillin-1;
PDBTitle: crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
48c4j4aG_
not modelled 9.6 43
PDB header:de novo protein
Chain: G: PDB Molecule:cortexillin-1;
PDBTitle: crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
49c3l34H_
not modelled 9.5 62
PDB header:transferase
Chain: H: PDB Molecule:sensor protein;
PDBTitle: the crystal structure of a two-component sensor domain (2nd2 form) from pseudomonas aeruginosa pa01
50c1n54A_
not modelled 9.5 20
PDB header:rna binding protein
Chain: A: PDB Molecule:80 kda nuclear cap binding protein;
PDBTitle: cap binding complex m7gpppg free
51c1abzA_
not modelled 9.4 40
PDB header:de novo design
Chain: A: PDB Molecule:alpha-t-alpha;
PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures
52c2q7cC_
not modelled 9.4 30
PDB header:viral protein
Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and hivgp41;
PDBTitle: crystal structure of iqn17
53c3ci9B_
not modelled 9.0 31
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
54c4j4aD_
not modelled 9.0 43
PDB header:de novo protein
Chain: D: PDB Molecule:cortexillin-1;
PDBTitle: crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
55c4j4aA_
not modelled 9.0 43
PDB header:de novo protein
Chain: A: PDB Molecule:cortexillin-1;
PDBTitle: crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
56d1wgna_
not modelled 8.9 32
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
57c4j4aB_
not modelled 8.9 43
PDB header:de novo protein
Chain: B: PDB Molecule:cortexillin-1;
PDBTitle: crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
58c6gbrA_
not modelled 8.4 18
PDB header:viral protein
Chain: A: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the oligomerization domain of vp35 from reston2 virus, mercury derivative
59c4j4aJ_
not modelled 8.4 43
PDB header:de novo protein
Chain: J: PDB Molecule:cortexillin-1;
PDBTitle: crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
60c4j4aC_
not modelled 8.4 43
PDB header:de novo protein
Chain: C: PDB Molecule:cortexillin-1;
PDBTitle: crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
61c6gboG_
not modelled 7.1 31
PDB header:viral protein
Chain: G: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the oligomerization domain of vp35 from ebola2 virus
62c3onjA_
not modelled 6.9 23
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
63c1piqA_
not modelled 6.8 26
PDB header:dna binding protein
Chain: A: PDB Molecule:protein (general control protein gcn4-piq);
PDBTitle: crystal structure of gcn4-piq, a trimeric coiled coil with buried2 polar residues
64c1unvA_
not modelled 6.7 30
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
65d1ykhb1
not modelled 6.5 12
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
66c4wy4D_
not modelled 6.0 27
PDB header:membrane protein
Chain: D: PDB Molecule:synaptosomal-associated protein 29;
PDBTitle: crystal structure of autophagic snare complex
67c2xzrA_
not modelled 5.9 14
PDB header:cell adhesion
Chain: A: PDB Molecule:immunoglobulin-binding protein eibd;
PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors
68c2gl2B_
not modelled 5.9 15
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
69c3nzzA_
not modelled 5.7 23
PDB header:cell invasion
Chain: A: PDB Molecule:cell invasion protein sipd;
PDBTitle: crystal structure of the salmonella type iii secretion system tip2 protein sipd
70d2csua3
not modelled 5.6 26
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
71c3thfA_
not modelled 5.6 15
PDB header:actin-binding protein/protein binding
Chain: A: PDB Molecule:protein shroom;
PDBTitle: crystal structure of the sd2 domain from drosophila shroom
72c3u0cA_
not modelled 5.6 17
PDB header:cell invasion
Chain: A: PDB Molecule:invasin ipab;
PDBTitle: crystal structure of n-terminal region of type iii secretion first2 translocator ipab (residues 74-224)
73c4bxtH_
not modelled 5.6 47
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
74c5oiyF_
not modelled 5.4 47
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
75c5oixD_
not modelled 5.4 47
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
76c4bxtA_
not modelled 5.4 47
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
77c5oixH_
not modelled 5.4 47
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
78c5oiyD_
not modelled 5.4 47
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
79c6j5id_
not modelled 5.3 21
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
80c4hjdB_
not modelled 5.3 38
PDB header:unknown function
Chain: B: PDB Molecule:gcn4pli(alpha/beta/acyclic gamma);
PDBTitle: gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
81c4hjdA_
not modelled 5.3 38
PDB header:unknown function
Chain: A: PDB Molecule:gcn4pli(alpha/beta/acyclic gamma);
PDBTitle: gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
82d1j26a_
not modelled 5.3 24
Fold:dsRBD-like
Superfamily:Peptidyl-tRNA hydrolase domain-like
Family:Peptidyl-tRNA hydrolase domain
83c3mxzA_
not modelled 5.2 13
PDB header:chaperone
Chain: A: PDB Molecule:tubulin-specific chaperone a;
PDBTitle: crystal structure of tubulin folding cofactor a from arabidopsis2 thaliana
84c4bxtC_
not modelled 5.2 47
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
85d1uhma_
not modelled 5.2 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Linker histone H1/H5
86c4g1aB_
not modelled 5.1 36
PDB header:metal binding protein
Chain: B: PDB Molecule:aq-c16c19 peptide;
PDBTitle: metal-binding properties of a self-assembled coiled coil: formation of2 a polynuclear cd-thiolated cluster
87c5oiyC_
not modelled 5.1 47
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
88c5oiyE_
not modelled 5.0 47
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
89c4bxtD_
not modelled 5.0 47
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
90c5oiyG_
not modelled 5.0 47
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
91c5oixE_
not modelled 5.0 47
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a

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