Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3770A_(-)_4216059_4216241
DateFri Aug 9 18:20:47 BST 2019
Unique Job IDb141b6fb7afea6a7
SequenceVGSTPWCPNP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:15.420 Y:19.740 Z:20.298
Model (left) based on template d1xkua_
Top template information
Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
Confidence and coverage
Confidence: 72.7% Coverage: 22%
13 residues ( 22% of your sequence) have been modelled with 72.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1xkua_



72.7 62
Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
2c1xkuA_



72.7 62
PDB header:structural protein
Chain: A: PDB Molecule:decorin;
PDBTitle: crystal structure of the dimeric protein core of decorin, the2 archetypal small leucine-rich repeat proteoglycan
3c3j32B_



45.6 67
PDB header:oxygen transport
Chain: B: PDB Molecule:hemocyanin isoform 1;
PDBTitle: an asymmetric unit map from electron cryo-microscopy of haliotis2 diversicolor molluscan hemocyanin isoform 1 (hdh1)
4c4walA_



43.2 50
PDB header:protein binding/rna
Chain: A: PDB Molecule:branchpoint-bridging protein;
PDBTitle: crystal structure of selenomethionine msl5 protein in complex with rna2 at 2.2 a
5d2bl5a1



35.7 43
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
6c4jvhA_



35.2 41
PDB header:rna binding protein
Chain: A: PDB Molecule:protein quaking;
PDBTitle: structure of the star domain of quaking protein in complex with rna
7c4bstB_



31.8 57
PDB header:signaling protein
Chain: B: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: structure of the ectodomain of lgr5 in complex with r-spondin-12 (fu1fu2) in p6122 crystal form
8d1k1ga_



31.5 36
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
9d2phna1



29.4 26
Fold:CofE-like
Superfamily:CofE-like
Family:CofE-like
10c5el3D_



28.2 21
PDB header:rna binding protein
Chain: D: PDB Molecule:kh domain-containing, rna-binding, signal transduction-
PDBTitle: structure of the kh domain of t-star
11d1myka_



26.9 36
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
12c4pbwB_



26.4 36
PDB header:signaling protein
Chain: B: PDB Molecule:nt-3 growth factor receptor;
PDBTitle: crystal structure of chicken receptor protein tyrosine phosphatase2 sigma in complex with trkc
13d1baza_



26.1 36
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
14c4u7lA_



24.7 36
PDB header:signaling protein
Chain: A: PDB Molecule:leucine-rich repeats and immunoglobulin-like domains
PDBTitle: lrig1 extracellular domain: structure and function analysis
15c5eltB_



23.6 21
PDB header:rna binding protein
Chain: B: PDB Molecule:kh domain-containing, rna-binding, signal transduction-
PDBTitle: structure of the qua1-kh domain of t-star in complex with uaau rna
16d1bdta_



23.2 36
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
17c4jvyA_



20.7 50
PDB header:rna binding protein
Chain: A: PDB Molecule:female germline-specific tumor suppressor gld-1;
PDBTitle: structure of the star (signal transduction and activation of rna)2 domain of gld-1 bound to rna
18c4qxeA_



20.5 50
PDB header:membrane protein
Chain: A: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: crystal structure of lgr4 fused with hagfish vlr
19c4qdhA_



20.1 36
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 9
PDBTitle: crystal structure of the c-terminal domain of mouse tlr9
20c4kt1A_



19.9 50
PDB header:hormone receptor/cell adhesion
Chain: A: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: complex of r-spondin 1 with lgr4 extracellular domain
21c4y61B_



not modelled 19.6 22
PDB header:hydrolase/signaling protein
Chain: B: PDB Molecule:slit and ntrk-like protein 2;
PDBTitle: crystal structure of the complex between slitrk2 lrr1 and ptp delta2 ig1-fn1
22d1w8aa_



not modelled 19.0 45
Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
23c5jy5A_



not modelled 18.6 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin 1 from cryptococcus neoformans at 1.82 angstroms resolution
24c2ft3B_



not modelled 18.6 55
PDB header:structural protein, signaling protein
Chain: B: PDB Molecule:biglycan;
PDBTitle: crystal structure of the biglycan dimer core protein
25c2dj0A_



not modelled 18.2 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-related transmembrane protein 2;
PDBTitle: the solution structure of the thioredoxin domain of human2 thioredoxin-related transmembrane protein 2
26c3hypB_



not modelled 17.9 44
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of bacteroides fragilis trxp_s105g mutant
27c5a5cD_



not modelled 16.2 36
PDB header:signaling protein
Chain: D: PDB Molecule:lrrtm;
PDBTitle: structure of an engineered neuronal lrrtm2 adhesion molecule
28c3zzxB_



not modelled 15.9 50
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystallographic structure of thioredoxin from litopenaeus vannamei
29c2v70D_



not modelled 15.8 45
PDB header:structural protein
Chain: D: PDB Molecule:slit homolog 2 protein n-product;
PDBTitle: third lrr domain of human slit2
30c2l6dA_



not modelled 15.7 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution structure of desulfothioredoxin from desulfovibrio vulgaris2 hildenborough in its reduced form
31c5e37A_



not modelled 15.7 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:ef-hand domain-containing thioredoxin;
PDBTitle: redox protein from chlamydomonas reinhardtii
32c2mcsA_



not modelled 15.3 63
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution nmr structure of a putative thioredoxin (ech_0218) in the2 reduced state from ehrlichia chaffeensis, the etiological agent3 responsible for human monocytic ehrlichiosis. seattle structural4 genomics center for infectious disease target ehcha.00546.a
33d1ozna_



not modelled 14.9 57
Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
34d2fc6a1



not modelled 14.6 63
Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger
35c4bsrB_



not modelled 14.3 57
PDB header:signaling protein
Chain: B: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: structure of the ectodomain of lgr5 in complex with r-spondin-12 (fu1fu2) in p22121 crystal form
36c4p8sA_



not modelled 14.1 46
PDB header:membrane protein
Chain: A: PDB Molecule:reticulon-4 receptor-like 2;
PDBTitle: crystal structure of nogo-receptor-2
37c4v2eA_



not modelled 13.7 36
PDB header:signaling protein
Chain: A: PDB Molecule:fibronectin leucine rich transmembrane protein 3;
PDBTitle: flrt3 lrr domain
38c2fc6A_



not modelled 13.7 63
PDB header:transcription
Chain: A: PDB Molecule:target of egr1, member 1;
PDBTitle: solution structure of the zf-ccch domain of target of egr1,2 member 1 (nuclear)
39c2vlvA_



not modelled 13.5 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin h isoform 2.;
PDBTitle: crystal structure of barley thioredoxin h isoform 2 in partially2 radiation-reduced state
40c6bkvB_



not modelled 13.4 63
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from helicobacter pylori (strain g27)
41c4xsqA_



not modelled 13.1 42
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor-like protein bf66946;
PDBTitle: structure of a variable lymphocyte receptor-like protein bf66946 from2 branchiostoma floridae
42c2vm2C_



not modelled 13.0 50
PDB header:oxidoreductase
Chain: C: PDB Molecule:thioredoxin h isoform 1.;
PDBTitle: crystal structure of barley thioredoxin h isoform 1 crystallized using2 peg as precipitant
43c2f51B_



not modelled 13.0 63
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: structure of trichomonas vaginalis thioredoxin
44c2oe0B_



not modelled 12.5 50
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin-3;
PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae
45d1xfla_



not modelled 12.5 50
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
46d1mylb_



not modelled 12.4 33
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
47c5o0oB_



not modelled 12.3 50
PDB header:signaling protein
Chain: B: PDB Molecule:reticulon-4 receptor;
PDBTitle: deglycosylated nogo receptor with native disulfide structure 5
48c5hccD_



not modelled 12.2 47
PDB header:immune system
Chain: D: PDB Molecule:dermacentor andersoni raci3;
PDBTitle: ternary complex of human complement c5 with ornithodoros moubata omci2 and dermacentor andersoni raci3.
49c6gn9A_



not modelled 11.5 63
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of a thioredoxin from clostridium acetobutylicum at2 1.75 a resolution
50d1bazb_



not modelled 11.0 38
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
51c2yqrA_



not modelled 10.9 55
PDB header:rna binding protein
Chain: A: PDB Molecule:kiaa0907 protein;
PDBTitle: solution structure of the kh domain in kiaa0907 protein
52c2o6sA_



not modelled 10.9 45
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b;
PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59
53c2pptA_



not modelled 10.8 63
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
54c5i65A_



not modelled 10.8 26
PDB header:unknown function
Chain: A: PDB Molecule:nonstructural proteins orf1a;
PDBTitle: porcine reproductive and respiratory syndrome virus nonstructural2 protein 7 alpha (nsp7 alpha)
55c4ui9U_



not modelled 10.7 67
PDB header:cell cycle
Chain: U: PDB Molecule:peptide;
PDBTitle: atomic structure of the human anaphase-promoting complex
56d1z5ye1



not modelled 10.5 38
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
57c4cw9A_



not modelled 10.4 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: entamoeba histolytica thiredoxin c34s mutant
58c3wgdD_



not modelled 10.4 63
PDB header:isomerase
Chain: D: PDB Molecule:thioredoxin domain-containing protein 5;
PDBTitle: crystal structure of erp46 trx1
59d1gh2a_



not modelled 10.4 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
60d1i5ga_



not modelled 10.2 50
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
61c2z66A_



not modelled 9.8 36
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4;
PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61
62d1kyza1



not modelled 9.8 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
63c2dizA_



not modelled 9.6 44
PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin domain-containing protein 5;
PDBTitle: the solution structure of the third thioredoxin domain of2 human thioredoxin domain-containing protein 5
64c1e9kA_



not modelled 9.5 83
PDB header:hydrolase
Chain: A: PDB Molecule:camp-specific 3',5'-cyclic phosphodiesterase 4d;
PDBTitle: the structure of the rack1 interaction sites located within the unique2 n-terminal region of the camp-specific phosphodiesterase, pde4d5.
65c2he3A_



not modelled 9.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 2;
PDBTitle: crystal structure of the selenocysteine to cysteine mutant of human2 glutathionine peroxidase 2 (gpx2)
66c2l8kA_



not modelled 9.4 34
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 7;
PDBTitle: nmr structure of the arterivirus nonstructural protein 7 alpha (nsp72 alpha)
67c4qxfB_



not modelled 9.2 50
PDB header:membrane protein
Chain: B: PDB Molecule:leucine-rich repeat-containing g-protein coupled receptor
PDBTitle: crystal structure of human lgr4 and rspo1
68c3p2aB_



not modelled 9.0 63
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
69d1myla_



not modelled 9.0 33
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
70c4cnmA_



not modelled 8.9 57
PDB header:cell adhesion
Chain: A: PDB Molecule:trophoblast glycoprotein;
PDBTitle: crystal structure of human 5t4 (wnt-activated inhibitory2 factor 1, trophoblast glycoprotein)
71d1b28a_



not modelled 8.8 33
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
72c5mx0B_



not modelled 8.3 57
PDB header:structural protein
Chain: B: PDB Molecule:fibromodulin;
PDBTitle: crystal structure of human fibromodulin
73d1nhoa_



not modelled 8.2 43
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
74c3me8B_



not modelled 7.8 19
PDB header:electron transport
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of putative electron transfer protein aq_2194 from2 aquifex aeolicus vf5
75c4v2dA_



not modelled 7.7 36
PDB header:signaling protein
Chain: A: PDB Molecule:fibronectin leucine rich transmembrane protein 2;
PDBTitle: flrt2 lrr domain
76d1knga_



not modelled 7.6 36
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
77c1w89E_



not modelled 7.5 50
PDB header:electron transport
Chain: E: PDB Molecule:thioredoxin;
PDBTitle: structure of the reduced form of human thioredoxin 2
78c4i8bA_



not modelled 7.5 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from schistosoma japonicum
79c3p2aA_



not modelled 7.5 63
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
80c3m18A_



not modelled 7.2 17
PDB header:immune system
Chain: A: PDB Molecule:variable lymphocyte receptor a diversity region;
PDBTitle: crystal structure of variable lymphocyte receptor vlra.r2.1 in complex2 with hen egg lysozyme
81c4mnnA_



not modelled 7.2 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin related protein;
PDBTitle: the crystal structure of sso1120 from sulfolobus solfataricus
82d1xwdc1



not modelled 7.2 36
Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:L domain-like
Family:Ngr ectodomain-like
83c2wfhB_



not modelled 7.1 36
PDB header:splicing
Chain: B: PDB Molecule:slit homolog 2 protein c-product;
PDBTitle: the human slit 2 dimerization domain d4
84c5y30A_



not modelled 7.0 45
PDB header:cell adhesion
Chain: A: PDB Molecule:leucine-rich glioma-inactivated protein 1;
PDBTitle: crystal structure of lgi1 lrr domain
85c2yoiA_



not modelled 6.9 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:leca thioredoxin;
PDBTitle: crystal structure of ancestral thioredoxin relative to last eukaryotes2 common ancestor (leca) from the precambrian period
86c3g3aA_



not modelled 6.9 45
PDB header:hydrolase/immune system
Chain: A: PDB Molecule:variable lymphocyte receptor vlrb.2d;
PDBTitle: structure of a lamprey variable lymphocyte receptor in2 complex with a protein antigen
87c4bedA_



not modelled 6.9 56
PDB header:oxygen transport
Chain: A: PDB Molecule:hemocyanin klh1;
PDBTitle: keyhole limpet hemocyanin (klh): 9a cryoem structure and molecular2 model of the klh1 didecamer reveal the interfaces and intricate3 topology of the 160 functional units
88c5lhzE_



not modelled 6.8 75
PDB header:structural protein
Chain: E: PDB Molecule:scl-interrupting locus protein;
PDBTitle: pb3 domain of human plk4 in complex with coiled-coil domain of stil
89c4yypB_



not modelled 6.8 75
PDB header:transferase
Chain: B: PDB Molecule:scl-interrupting locus protein;
PDBTitle: crystal structure of human plk4-pb3 in complex with stil-cc
90c2vafA_



not modelled 6.8 13
PDB header:metal binding protein
Chain: A: PDB Molecule:calsequestrin-2;
PDBTitle: crystal structure of human cardiac calsequestrin
91c2jmoA_



not modelled 6.7 60
PDB header:ligase
Chain: A: PDB Molecule:parkin;
PDBTitle: ibr domain of human parkin
92c3rfeB_



not modelled 6.6 63
PDB header:cell adhesion
Chain: B: PDB Molecule:platelet glycoprotein ib beta chain;
PDBTitle: crystal structure of glycoprotein gpib ectodomain
93c5lhzF_



not modelled 6.5 75
PDB header:structural protein
Chain: F: PDB Molecule:scl-interrupting locus protein;
PDBTitle: pb3 domain of human plk4 in complex with coiled-coil domain of stil
94c5lhzD_



not modelled 6.5 75
PDB header:structural protein
Chain: D: PDB Molecule:scl-interrupting locus protein;
PDBTitle: pb3 domain of human plk4 in complex with coiled-coil domain of stil
95c1j08A_



not modelled 6.5 22
PDB header:isomerase
Chain: A: PDB Molecule:glutaredoxin-like protein;
PDBTitle: crystal structure of glutaredoxin-like protein from2 pyrococcus horikoshii
96c5lhwA_



not modelled 6.5 75
PDB header:structural protein
Chain: A: PDB Molecule:scl-interrupting locus protein;
PDBTitle: central coiled-coil domain of human stil
97c2yzuA_



not modelled 6.5 50
PDB header:electron transport
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of oxidized thioredoxin from thermus thermophilus2 hb8
98c3ia1A_



not modelled 6.4 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin;
PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus
99c5z8yE_



not modelled 6.2 36
PDB header:cell adhesion
Chain: E: PDB Molecule:leucine-rich repeat transmembrane neuronal protein 2;
PDBTitle: crystal structure of human lrrtm2 in complex with neurexin 1beta

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