1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		V	R	A	E	R	A	R	A	I	G	L	F	R	Y	Q	L	I	R	E	A	A	D	A	A	H	S	T	K	E	R	G	K	M	V	R	E	L	A	S	R	E	H	T	D	P	F	G	R	K	V	R	I	S	R	H	T	I	D	R	W
Secondary structure
SS confidence
Disorder		?	?	?																				?	?	?	?	?															?
Disorder confidence
		.	.	.
Sequence		I	R	N
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key High(9)                     Low (0)

? Disordered ( 19%) Alpha helix ( 90%) Beta strand ( 0%)

Rank Aligned region

PDB 4fcy chain A Region: 4 - 62 Aligned: 50 Modelled: 59 Confidence: 85.0% Identity: 10% PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposase; PDBTitle: crystal structure of the bacteriophage mu transpososome Phyre2 PDB 1u78 chain A Region: 25 - 63 Aligned: 39 Modelled: 39 Confidence: 61.4% Identity: 23% PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna Phyre2 PDB 5caj chain B Region: 25 - 45 Aligned: 21 Modelled: 21 Confidence: 43.3% Identity: 29% PDB header:unknown function Chain: B: PDB Molecule:upf0246 protein yaaa; PDBTitle: crystal structure of e. coli yaaa, a member of the duf328/upf02462 family Phyre2 PDB 2rn7 chain A Region: 12 - 62 Aligned: 42 Modelled: 51 Confidence: 29.7% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:is629 orfa; PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125 Phyre2 PDB 3hos chain A Region: 15 - 62 Aligned: 39 Modelled: 48 Confidence: 25.0% Identity: 26% PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg Phyre2 PDB 2fjr chain B Region: 24 - 63 Aligned: 40 Modelled: 40 Confidence: 22.9% Identity: 8% PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 Phyre2 PDB 5j10 chain A Region: 15 - 38 Aligned: 24 Modelled: 24 Confidence: 22.0% Identity: 42% PDB header:de novo protein Chain: A: PDB Molecule:peptide design 2l4hc2_24; PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity Phyre2 PDB 1pdn chain C Region: 25 - 62 Aligned: 38 Modelled: 38 Confidence: 20.3% Identity: 18% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 5wzh chain A Region: 17 - 50 Aligned: 34 Modelled: 34 Confidence: 19.0% Identity: 18% PDB header:rna binding protein/rna Chain: A: PDB Molecule:pumilio homolog 23; PDBTitle: structure of apum23-ggaauugacgg Phyre2 PDB 2elh chain A Region: 25 - 63 Aligned: 39 Modelled: 39 Confidence: 18.9% Identity: 13% PDB header:dna binding protein Chain: A: PDB Molecule:cg11849-pa; PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa Phyre2 PDB 2jn6 chain A domain 1 Region: 12 - 62 Aligned: 35 Modelled: 35 Confidence: 18.4% Identity: 20% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Cgl2762-like Phyre2 PDB 2kvv chain A Region: 54 - 63 Aligned: 10 Modelled: 10 Confidence: 17.0% Identity: 30% PDB header:hydrolase Chain: A: PDB Molecule:putative excisionase; PDBTitle: solution nmr of putative excisionase from klebsiella pneumoniae,2 northeast structural genomics consortium target target kpr49 Phyre2 PDB 5svd chain A Region: 26 - 50 Aligned: 25 Modelled: 25 Confidence: 15.7% Identity: 24% PDB header:rna binding protein Chain: A: PDB Molecule:nucleolar protein 9; PDBTitle: nop9, a new puf-like protein, prevents premature pre-rrna cleavage to2 correctly process mature 18s rrna Phyre2 PDB 6pax chain A Region: 25 - 62 Aligned: 38 Modelled: 38 Confidence: 15.7% Identity: 13% PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Phyre2 PDB 3zhi chain A Region: 28 - 63 Aligned: 36 Modelled: 36 Confidence: 12.9% Identity: 11% PDB header:transcription Chain: A: PDB Molecule:ci; PDBTitle: n-terminal domain of the ci repressor from bacteriophage tp901-1 Phyre2 PDB 5tmx chain A Region: 15 - 34 Aligned: 20 Modelled: 20 Confidence: 12.5% Identity: 35% PDB header:transcription regulator Chain: A: PDB Molecule:protein sini; PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis Phyre2 PDB 6pax chain A domain 1 Region: 25 - 62 Aligned: 38 Modelled: 38 Confidence: 11.7% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 6ama chain O Region: 46 - 63 Aligned: 18 Modelled: 18 Confidence: 10.5% Identity: 22% PDB header:dna binding protein/dna Chain: O: PDB Molecule:putative dna-binding protein; PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom Phyre2 PDB 5lgm chain A Region: 11 - 43 Aligned: 33 Modelled: 33 Confidence: 9.5% Identity: 33% PDB header:transcription Chain: A: PDB Molecule:fusion protein 5.5/5.7; PDBTitle: gp5.7 mutant l42a Phyre2 PDB 2ict chain A domain 1 Region: 31 - 63 Aligned: 33 Modelled: 33 Confidence: 9.5% Identity: 21% Fold: lambda repressor-like DNA-binding domains Superfamily: lambda repressor-like DNA-binding domains Family: SinR domain-like Phyre2 1 c4fcyA_ 2 c1u78A_ 3 c5cajB_ 4 c2rn7A_ 5 c3hosA_ 6 c2fjrB_ 7 c5j10A_ 8 d1pdnc_ 9 c5wzhA_ 10 c2elhA_ 11 d2jn6a1 12 c2kvvA_ 13 c5svdA_ 14 c6paxA_ 15 c3zhiA_ 16 c5tmxA_ 17 d6paxa1 18 c6amaO_ 19 c5lgmA_ 20 d2icta1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35