Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3770c_(-)_4215378_4215953
DateFri Aug 9 18:20:47 BST 2019
Unique Job IDf2a8f09b1b9e20a0
SequenceMLSGIQQNTL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.272 Y:29.419 Z:20.091
Model (left) based on template c1wazA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
Confidence and coverage
Confidence: 31.6% Coverage: 18%
34 residues ( 18% of your sequence) have been modelled with 31.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1wazA_
31.6 32
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
2c2h3oA_
26.5 64
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
3c5y6aA_
22.7 35
PDB header:viral protein
Chain: A: PDB Molecule:chain a and b;
PDBTitle: crystal structure of the anti-crispr protein, acriia1
4d1dq3a2
19.4 31
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:PI-Pfui intein middle domain
5c2lj2A_
13.0 60
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: integral membrane core domain of the mercury transporter merf in lipid2 bilayer membranes
6c2m67A_
9.7 60
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
7c2v52M_
6.9 54
PDB header:structural protein/contractile protein
Chain: M: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel2 complexed to g-actin
8c2v51F_
6.7 53
PDB header:structural protein/contractile protein
Chain: F: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
9c2v51E_
6.7 53
PDB header:structural protein/contractile protein
Chain: E: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
10c6q5lA_
6.6 62
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24h;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24h
11c6q5hA_
6.6 62
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24d;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24d
12c6q5lB_
6.6 62
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24h;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24h
13c6q5mB_
6.4 62
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24dab;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24dab
14c6q5iB_
6.4 62
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24e;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24e
15c6q5kA_
6.4 62
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24k;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24k
16c6q5jE_
6.3 62
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hex*-l24e;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24e
17c6q5mA_
6.2 62
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24dab;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24dab
18c6q5jF_
6.0 62
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hex*-l24e;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24e
19c4kvuC_
5.9 62
PDB header:de novo protein
Chain: C: PDB Molecule:6-helix coiled coil cc-hex-l17c-w224bf;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
20c3r47J_
5.9 62
PDB header:de novo protein
Chain: J: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
21c3r47B_
not modelled 5.9 62
PDB header:de novo protein
Chain: B: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
22c3r47I_
not modelled 5.9 62
PDB header:de novo protein
Chain: I: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
23c6hn9A_
not modelled 5.8 100
PDB header:antimicrobial protein
Chain: A: PDB Molecule:nicomicin-1;
PDBTitle: nicomicin-1 -- novel antimicrobial peptides from the arctic polychaeta2 nicomache minor provide new molecular insight into biological role of3 the brichos domain
24c4kvvC_
not modelled 5.8 62
PDB header:de novo protein
Chain: C: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
25c5dayA_
not modelled 5.7 42
PDB header:chaperone
Chain: A: PDB Molecule:nap1-related protein 1;
PDBTitle: the structure of nap1-related protein(nrp1) in arabidopsis
26c6q5kB_
not modelled 5.7 62
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24k;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24k
27c3esiD_
not modelled 5.7 55
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from2 erwinia carotovora subsp. atroseptica. northeast3 structural genomics target ewr179
28c1zglQ_
not modelled 5.7 9
PDB header:immune system
Chain: Q: PDB Molecule:t cell receptor alpha chain;
PDBTitle: crystal structure of 3a6 tcr bound to mbp/hla-dr2a
29c4kvvJ_
not modelled 5.5 62
PDB header:de novo protein
Chain: J: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
30c4kvvG_
not modelled 5.5 62
PDB header:de novo protein
Chain: G: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
31c4kvvE_
not modelled 5.5 62
PDB header:de novo protein
Chain: E: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
32c4kvvB_
not modelled 5.5 62
PDB header:de novo protein
Chain: B: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
33c3r47M_
not modelled 5.4 62
PDB header:de novo protein
Chain: M: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
34c3r47F_
not modelled 5.4 62
PDB header:de novo protein
Chain: F: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
35c3r47C_
not modelled 5.4 62
PDB header:de novo protein
Chain: C: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
36c3r47L_
not modelled 5.4 62
PDB header:de novo protein
Chain: L: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
37c6q5hB_
not modelled 5.4 62
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24d;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24d
38c4kvvK_
not modelled 5.2 62
PDB header:de novo protein
Chain: K: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
39c4kvvD_
not modelled 5.2 62
PDB header:de novo protein
Chain: D: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
40c4kvvI_
not modelled 5.2 62
PDB header:de novo protein
Chain: I: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
41c4kvvA_
not modelled 5.2 62
PDB header:de novo protein
Chain: A: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
42c4kvvF_
not modelled 5.2 62
PDB header:de novo protein
Chain: F: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
43c6q5nD_
not modelled 5.2 62
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
44c6q5nG_
not modelled 5.2 62
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
45c6q5nE_
not modelled 5.2 62
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
46c6q5nC_
not modelled 5.2 62
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
47c4ui9D_
not modelled 5.2 57
PDB header:cell cycle
Chain: D: PDB Molecule:anaphase-promoting complex subunit 15;
PDBTitle: atomic structure of the human anaphase-promoting complex
48c6q5iA_
not modelled 5.2 62
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24e;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24e
49c4kvuA_
not modelled 5.2 62
PDB header:de novo protein
Chain: A: PDB Molecule:6-helix coiled coil cc-hex-l17c-w224bf;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
50c6agbH_
not modelled 5.1 56
PDB header:hydrolase/rna
Chain: H: PDB Molecule:ribonucleases p/mrp protein subunit pop8;
PDBTitle: cryo-em structure of yeast ribonuclease p
51c3r47A_
not modelled 5.1 62
PDB header:de novo protein
Chain: A: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
52c3r47G_
not modelled 5.1 62
PDB header:de novo protein
Chain: G: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
53c3r47E_
not modelled 5.1 62
PDB header:de novo protein
Chain: E: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
54c4kvvL_
not modelled 5.0 62
PDB header:de novo protein
Chain: L: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
55c4kvvH_
not modelled 5.0 62
PDB header:de novo protein
Chain: H: PDB Molecule:6-helix coiled coil cc-hex-l24c peptide with an alkylated
PDBTitle: crystal structure of an alkylated cys mutant of cc-hex
56c6q5nL_
not modelled 5.0 62
PDB header:de novo protein
Chain: L: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
57c6q5nF_
not modelled 5.0 62
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
58c6q5nJ_
not modelled 5.0 62
PDB header:de novo protein
Chain: J: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
59c6q5nK_
not modelled 5.0 62
PDB header:de novo protein
Chain: K: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
60c6q5nA_
not modelled 5.0 62
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
61c6q5nI_
not modelled 5.0 62
PDB header:de novo protein
Chain: I: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle
62c6q5nB_
not modelled 5.0 62
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24nle;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24nle

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below