1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		V	P	A	P	A	E	K	A	L	S	Q	V	G	F	R	R	I	A	A	D	L	A	R	P	A	E	T	V	R	G	W	L	R	R	F	A	E	R	A	E	A	V	R	S	V	F	T	V	M	L	R	A	V	D	P	D	P	V	M	P
Secondary structure
SS confidence
Disorder		?	?	?	?																	?	?	?	?																													?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Sequence		D	A	A	V	G	V	F	A	Y	A	V	T	V	I	A	A	V	V	T	V	I	E	C	Q	F	A	L	S	T	V	S	L	A	E	T	A	V	A	V	S	G	G	R	L	V	A	P	G
Secondary structure
SS confidence
Disorder																												?			?	?									?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key High(9)                     Low (0)

? Disordered ( 20%) Alpha helix ( 78%) Beta strand ( 0%)

Rank Aligned region

PDB 1k78 chain A domain 1 Region: 15 - 37 Aligned: 23 Modelled: 23 Confidence: 49.0% Identity: 26% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 2oeb chain A domain 1 Region: 30 - 37 Aligned: 8 Modelled: 8 Confidence: 46.4% Identity: 38% Fold: ATPD N-terminal domain-like Superfamily: AF1862-like Family: Cas Cmr5-like Phyre2 PDB 2zop chain A Region: 30 - 37 Aligned: 8 Modelled: 8 Confidence: 45.1% Identity: 50% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein tthb164; PDBTitle: x-ray crystal structure of a crispr-associated cmr5 family2 protein from thermus thermophilus hb8 Phyre2 PDB 4gkf chain A Region: 30 - 37 Aligned: 8 Modelled: 8 Confidence: 42.1% Identity: 63% PDB header:unknown function Chain: A: PDB Molecule:crispr system cmr subunit cmr5; PDBTitle: crystal structure and characterization of cmr5 protein from pyrococcus2 furiosus Phyre2 PDB 1pdn chain C Region: 15 - 38 Aligned: 24 Modelled: 24 Confidence: 37.0% Identity: 25% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 6pax chain A domain 1 Region: 15 - 38 Aligned: 24 Modelled: 24 Confidence: 34.7% Identity: 21% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Paired domain Phyre2 PDB 6pax chain A Region: 6 - 38 Aligned: 33 Modelled: 33 Confidence: 26.5% Identity: 24% PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Phyre2 PDB 2rn7 chain A Region: 14 - 35 Aligned: 22 Modelled: 22 Confidence: 24.3% Identity: 32% PDB header:unknown function Chain: A: PDB Molecule:is629 orfa; PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125 Phyre2 PDB 1iuf chain A domain 2 Region: 30 - 38 Aligned: 9 Modelled: 9 Confidence: 23.7% Identity: 56% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Centromere-binding Phyre2 PDB 1sy9 chain B Region: 13 - 35 Aligned: 19 Modelled: 22 Confidence: 23.5% Identity: 63% PDB header:calcium-binding protein Chain: B: PDB Molecule:cyclic-nucleotide-gated olfactory channel; PDBTitle: structure of calmodulin complexed with a fragment of the2 olfactory cng channel Phyre2 PDB 1u78 chain A Region: 13 - 35 Aligned: 23 Modelled: 23 Confidence: 22.2% Identity: 13% PDB header:dna binding protein/dna Chain: A: PDB Molecule:transposable element tc3 transposase; PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna Phyre2 PDB 3hef chain B Region: 14 - 43 Aligned: 30 Modelled: 30 Confidence: 21.2% Identity: 17% PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit Phyre2 PDB 1iuf chain A Region: 30 - 38 Aligned: 9 Modelled: 9 Confidence: 18.4% Identity: 56% PDB header:dna binding protein Chain: A: PDB Molecule:centromere abp1 protein; PDBTitle: low resolution solution structure of the two dna-binding2 domains in schizosaccharomyces pombe abp1 protein Phyre2 PDB 2kwt chain A Region: 31 - 41 Aligned: 11 Modelled: 11 Confidence: 18.4% Identity: 64% PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [27-59] Phyre2 PDB 1hlv chain A domain 2 Region: 29 - 38 Aligned: 10 Modelled: 10 Confidence: 18.2% Identity: 60% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Centromere-binding Phyre2 PDB 2ikb chain A domain 1 Region: 29 - 37 Aligned: 9 Modelled: 9 Confidence: 15.1% Identity: 56% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: NMB1012-like Phyre2 PDB 1hlv chain A Region: 29 - 38 Aligned: 10 Modelled: 10 Confidence: 12.0% Identity: 60% PDB header:dna binding protein/dna Chain: A: PDB Molecule:major centromere autoantigen b; PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna Phyre2 PDB 5kn4 chain B Region: 25 - 46 Aligned: 22 Modelled: 22 Confidence: 11.7% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:pavine n-methyltransferase; PDBTitle: pavine n-methyltransferase apoenzyme ph 6.0 Phyre2 PDB 6m8n chain A Region: 44 - 56 Aligned: 13 Modelled: 13 Confidence: 10.4% Identity: 62% PDB header:hydrolase Chain: A: PDB Molecule:p5afcna; PDBTitle: endo-fucoidan hydrolase p5afcna from glycoside hydrolase family 107 Phyre2 PDB 6gkv chain B Region: 25 - 46 Aligned: 22 Modelled: 22 Confidence: 7.9% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:coclaurine n-methyltransferase; PDBTitle: crystal structure of coclaurine n-methyltransferase (cnmt) bound to n-2 methylheliamine and sah Phyre2 1 d1k78a1 2 d2oeba1 3 c2zopA_ 4 c4gkfA_ 5 d1pdnc_ 6 d6paxa1 7 c6paxA_ 8 c2rn7A_ 9 d1iufa2 10 c1sy9B_ 11 c1u78A_ 12 c3hefB_ 13 c1iufA_ 14 c2kwtA_ 15 d1hlva2 16 d2ikba1 17 c1hlvA_ 18 c5kn4B_ 19 c6m8nA_ 20 c6gkvB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37