Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3776_(-)_4221267_4222826
DateFri Aug 9 18:20:48 BST 2019
Unique Job ID3c747906bd043d79
SequenceMFEISLSDPV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.585 Y:28.954 Z:38.008
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 98.8% Coverage: 12%
62 residues ( 12% of your sequence) have been modelled with 98.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



98.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c5mkwA_



98.5 26
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
3c6ghcA_



98.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
4c5x1hS_



98.2 22
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
5c5h0mA_



97.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
6c5vgbA_



97.4 19
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
7c5zmmD_



97.2 34
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
8c4ogeA_



96.3 24
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
9c5axwA_



95.9 11
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10c6ghsA_



91.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
11d1vz0a1



79.9 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
12d2ho2a1



79.7 39
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
13c3mkyP_



79.5 22
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
14d2jb0b1



76.5 23
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
15d2ysca1



72.7 41
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
16c3mkzU_



69.5 24
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
17c4cmqB_



68.8 16
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
18c4by2C_



68.8 33
PDB header:structural protein
Chain: C: PDB Molecule:anastral spindle 2, sas 4;
PDBTitle: sas-4 (dcpap) tcp domain in complex with a proline rich motif of ana22 (dstil) of drosophila melanogaster
19c3plwA_



66.3 24
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
20d2e45a1



62.6 38
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
21d2gykb1



not modelled 62.5 23
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
22c4ld3A_



not modelled 60.0 28
PDB header:structural protein, protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structural analysis of the microcephaly protein cpap g-box domain2 suggests a role in centriole elongation.
23c4bxrB_



not modelled 56.9 30
PDB header:cell cycle
Chain: B: PDB Molecule:cpap;
PDBTitle: structure of the wild-type tcp10 domain of danio rerio cpap in complex2 with a peptide of danio rerio stil
24d2dlka1



not modelled 46.9 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
25c4uhpA_



not modelled 43.6 27
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
26c4qkoH_



not modelled 41.8 27
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
27c1r71B_



not modelled 40.8 19
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
28c7ceiB_



not modelled 39.0 23
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
29c5ew5C_



not modelled 37.5 19
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
30d1r71a_



not modelled 36.4 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
31c1va1A_



not modelled 34.9 38
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
32c3sztB_



not modelled 34.8 13
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
33d1a1ia1



not modelled 33.6 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
34d2glia4



not modelled 33.5 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
35d1ncsa_



not modelled 33.0 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
36d1zfda_



not modelled 32.9 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
37c5g2xC_



not modelled 29.5 22
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
38d1a1ga1



not modelled 28.8 21
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
39d1a1ha1



not modelled 27.6 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
40d1u86a1



not modelled 27.1 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
41d1tf3a2



not modelled 26.0 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42c1pxeA_



not modelled 25.1 55
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
43c1jjzA_



not modelled 24.8 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
44c1k48A_



not modelled 24.8 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
45d1ubdc3



not modelled 24.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
46c4go1A_



not modelled 24.7 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
47d1f2ig1



not modelled 24.6 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
48d1aaya1



not modelled 24.5 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
49d2glia3



not modelled 23.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
50d2glia5



not modelled 23.3 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
51d1ejga_



not modelled 23.2 40
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
52d1jmna_



not modelled 23.0 40
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
53c4lfuA_



not modelled 22.2 18
PDB header:dna binding protein
Chain: A: PDB Molecule:regulatory protein sdia;
PDBTitle: crystal structure of escherichia coli sdia in the space group c2
54d1sp2a_



not modelled 22.0 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
55d2dlka2



not modelled 22.0 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
56c4ttnA_



not modelled 21.8 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
57c4ttoA_



not modelled 21.6 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
58c4ttmA_



not modelled 21.5 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
59d1n1ua_



not modelled 21.5 44
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
60c1n1uA_



not modelled 21.5 44
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
61d1pt4a_



not modelled 21.5 56
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
62c2f2iA_



not modelled 21.4 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
63c2khbA_



not modelled 21.2 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
64c2mn1A_



not modelled 21.1 56
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
65c2w48D_



not modelled 20.3 17
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
66c3t0yA_



not modelled 19.7 13
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
67c1kalA_



not modelled 19.7 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
68d1bhia_



not modelled 19.6 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
69c6dhrA_



not modelled 19.0 44
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
70d1ubdc4



not modelled 19.0 44
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
71c2z2sD_



not modelled 18.9 18
PDB header:transcription
Chain: D: PDB Molecule:anti-sigma factor chrr, transcriptional activator chrr;
PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr
72d1nb1a_



not modelled 18.8 56
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
73c1nb1A_



not modelled 18.8 56
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
74c2lamA_



not modelled 18.5 44
PDB header:antiviral protein
Chain: A: PDB Molecule:cyclotide cter m;
PDBTitle: three-dimensional structure of the cyclotide cter m
75c2wsfN_



not modelled 18.3 50
PDB header:photosynthesis
Chain: N: PDB Molecule:photosystem i-n subunit;
PDBTitle: improved model of plant photosystem i
76c2o01N_



not modelled 18.3 50
PDB header:photosynthesis
Chain: N: PDB Molecule:photosystem i-n subunit;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
77c3e4hA_



not modelled 18.0 44
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
78c2f2jA_



not modelled 17.4 40
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
79c5yixB_



not modelled 16.9 18
PDB header:dna binding protein
Chain: B: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra sigma-interacting domain (sid) in complex2 with domain 2 of sigma 70
80c2lurA_



not modelled 16.9 56
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
81c2b8tA_



not modelled 16.8 20
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from u.urealyticum in complex2 with thymidine
82c5xe7A_



not modelled 16.7 24
PDB header:dna binding protein
Chain: A: PDB Molecule:ecf rna polymerase sigma factor sigj;
PDBTitle: crystal structure of mycobacterium tuberculosis extracytoplasmic2 function sigma factor sigj
83d1wiga2



not modelled 16.4 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
84c2kukA_



not modelled 16.3 31
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
85c2kerA_



not modelled 15.8 19
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685;
PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus
86d1w6ga1



not modelled 15.8 19
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
87c1orxA_



not modelled 15.7 40
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
88d1okha_



not modelled 15.5 50
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
89d1nbla_



not modelled 15.4 70
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
90d2b8ta2



not modelled 15.4 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
91d1orla_



not modelled 14.8 40
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
92c2k7gA_



not modelled 14.6 44
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: solution structure of varv f
93c2gj0A_



not modelled 14.5 44
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
94c2jmbA_



not modelled 14.0 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu4866;
PDBTitle: solution structure of the protein atu4866 from agrobacterium2 tumefaciens
95d1jmpa_



not modelled 13.8 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
96c2m9oA_



not modelled 13.6 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: solution structure of kalata b7
97d1s7oa_



not modelled 12.7 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:YlxM/p13-like
98c4umkA_



not modelled 12.1 14
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:probable chromosome-partitioning protein parb;
PDBTitle: the complex of spo0j and pars dna in chromosomal partition system
99d1igqa_



not modelled 12.0 22
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Transcriptional repressor protein KorB

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