Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3779_(-)_4225163_4227163
DateFri Aug 9 18:20:48 BST 2019
Unique Job IDa64eb13e4f649994
SequenceVGLWFGTLIA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.481 Y:61.335 Z:107.739
Model (left) based on template c6eznF_
Top template information
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
Confidence and coverage
Confidence: 99.9% Coverage: 77%
516 residues ( 77% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
567 residues ( 85%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6eznF_



99.9 14
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
2c3wajA_



99.8 13
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
3c3rceA_



99.6 12
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
4c5f15A_



99.4 11
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
5c3vu0B_



98.5 15
PDB header:transferase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-s2, af_0040, o30195_arcfu) from3 archaeoglobus fulgidus
6c3vgpA_



98.3 17
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase, putative;
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (af_0329) from archaeoglobus fulgidus
7c6p2rB_



96.3 13
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
8c6p25A_



95.5 14
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
9c2lgzA_



94.2 11
PDB header:transferase, membrane protein
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: solution structure of stt3p
10c3waiA_



92.6 16
PDB header:transferase, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, transmembrane
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-l, o29867_arcfu) from archaeoglobus3 fulgidus as a mbp fusion
11c3vu1A_



83.0 19
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein ph0242;
PDBTitle: crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (phaglb-l, o74088_pyrho) from pyrococcus3 horikoshii
12c2nacA_



67.5 13
PDB header:oxidoreductase(aldehyde(d),nad+(a))
Chain: A: PDB Molecule:nad-dependent formate dehydrogenase;
PDBTitle: high resolution structures of holo and apo formate dehydrogenase
13c5svbD_



57.2 16
PDB header:ligase
Chain: D: PDB Molecule:acetone carboxylase alpha subunit;
PDBTitle: mechanism of atp-dependent acetone carboxylation, acetone carboxylase2 amp bound structure
14c5l9wA_



55.8 10
PDB header:ligase
Chain: A: PDB Molecule:acetophenone carboxylase delta subunit;
PDBTitle: crystal structure of the apc core complex
15c3fn4A_



52.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:nad-dependent formate dehydrogenase;
PDBTitle: apo-form of nad-dependent formate dehydrogenase from bacterium2 moraxella sp.c-1 in closed conformation
16c2b5dX_



50.6 4
PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima
17d2naca2



46.5 13
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
18d2odgc1



40.6 19
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
19c2hyxA_



35.8 15
PDB header:unknown function
Chain: A: PDB Molecule:protein dipz;
PDBTitle: structure of the c-terminal domain of dipz from mycobacterium2 tuberculosis
20d1c01a_



34.8 21
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Plant antimicrobial protein MIAMP1
21c3fo5A_



not modelled 33.5 22
PDB header:lipid transport
Chain: A: PDB Molecule:thioesterase, adipose associated, isoform bfit2;
PDBTitle: human start domain of acyl-coenzyme a thioesterase 11 (acot11)
22d1t9ba2



not modelled 29.5 10
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
23c3qocD_



not modelled 27.9 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative metallopeptidase;
PDBTitle: crystal structure of n-terminal domain (creatinase/prolidase like2 domain) of putative metallopeptidase from corynebacterium diphtheriae
24d1ufaa2



not modelled 27.4 18
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:AmyC N-terminal domain-like
25c2xznU_



not modelled 25.4 20
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein l7ae containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
26c2opkC_



not modelled 24.5 5
PDB header:isomerase
Chain: C: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution
27c4hzbE_



not modelled 22.6 11
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
28c5t0zB_



not modelled 22.4 22
PDB header:structural protein
Chain: B: PDB Molecule:lipoprotein, putative;
PDBTitle: pelc from geobacter metallireducens
29c2zagB_



not modelled 21.4 14
PDB header:transferase
Chain: B: PDB Molecule:oligosaccharyl transferase stt3 subunit related protein;
PDBTitle: crystal structure of the semet-substituted soluble domain of stt3 from2 p. furiosus
30d1xzwa2



not modelled 21.2 6
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:Purple acid phosphatase-like
31c2miiA_



not modelled 20.8 8
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
32c3zk4A_



not modelled 20.5 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:diphosphonucleotide phosphatase 1;
PDBTitle: structure of purple acid phosphatase ppd1 isolated from2 yellow lupin (lupinus luteus) seeds
33d1pvda2



not modelled 19.8 7
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
34c2ou2A_



not modelled 19.6 29
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase htatip;
PDBTitle: acetyltransferase domain of human hiv-1 tat interacting2 protein, 60kda, isoform 3
35d2ozua1



not modelled 19.2 24
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
36c5ujwD_



not modelled 18.9 14
PDB header:isomerase
Chain: D: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from francisella2 tularensis subsp. tularensis schu s4
37c3zey1_



not modelled 18.7 9
PDB header:ribosome
Chain: 1: PDB Molecule:40s ribosomal protein s4, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
38d1fy7a_



not modelled 18.6 24
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
39c5oxwD_



not modelled 18.5 24
PDB header:splicing
Chain: D: PDB Molecule:neq068;
PDBTitle: structure of neqn from nanoarchaeum equitans
40c5azaA_



not modelled 18.5 19
PDB header:sugar binding protein, transferase
Chain: A: PDB Molecule:maltose-binding periplasmic protein,oligosaccharyl
PDBTitle: crystal structure of mbp-saglb fusion protein with a 20-residue spacer2 in the connector helix
41d2b5dx2



not modelled 18.4 4
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:AmyC N-terminal domain-like
42d1zpda2



not modelled 18.4 14
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
43c2givA_



not modelled 18.3 19
PDB header:transferase
Chain: A: PDB Molecule:probable histone acetyltransferase myst1;
PDBTitle: human myst histone acetyltransferase 1
44d2giva1



not modelled 18.3 19
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
45c1ufaA_



not modelled 18.0 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tt1467 protein;
PDBTitle: crystal structure of tt1467 from thermus thermophilus hb8
46c3izbD_



not modelled 17.8 12
PDB header:ribosome
Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
47d3bfxa1



not modelled 17.8 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
48c5gk9A_



not modelled 17.5 29
PDB header:transferase/metal binding protein
Chain: A: PDB Molecule:histone acetyltransferase kat7;
PDBTitle: crystal structure of human hbo1 in complex with brpf2
49d1ovma2



not modelled 17.4 14
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase Pyr module
50d2pjua1



not modelled 16.9 9
Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
51c4hrvB_



not modelled 16.7 11
PDB header:lipid binding protein
Chain: B: PDB Molecule:putative lipoprotein gna1162;
PDBTitle: crystal structure of lipoprotein gna1162 from neisseria meningitidis
52c2xwgA_



not modelled 16.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:sortase;
PDBTitle: crystal structure of sortase c-1 from actinomyces oris (formerly2 actinomyces naeslundii)
53d2z06a1



not modelled 16.2 12
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:TTHA0625-like
54c4g1kB_



not modelled 15.8 9
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from burkholderia2 thailandensis
55c4x9tA_



not modelled 15.6 10
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein upf0065;
PDBTitle: crystal structure of a tctc solute binding protein from polaromonas2 (bpro_3516, target efi-510338), no ligand
56d1w2za3



not modelled 15.4 11
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
57d2obba1



not modelled 15.1 9
Fold:HAD-like
Superfamily:HAD-like
Family:BT0820-like
58c2q5cA_



not modelled 15.0 7
PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
59c3j20E_



not modelled 14.8 11
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s4e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
60c3n92A_



not modelled 14.6 4
PDB header:transferase
Chain: A: PDB Molecule:alpha-amylase, gh57 family;
PDBTitle: crystal structure of tk1436, a gh57 branching enzyme from2 hyperthermophilic archaeon thermococcus kodakaraensis, in complex3 with glucose
61d1r5aa2



not modelled 14.4 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
62c5ohxB_



not modelled 14.4 8
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-synthase;
PDBTitle: structure of active cystathionine b-synthase from apis mellifera
63c5essB_



not modelled 14.2 15
PDB header:transferase
Chain: B: PDB Molecule:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
PDBTitle: crystal structure of m. tuberculosis mend bound to mg2+ and covalent2 intermediate i (a thdp and decarboxylated 2-oxoglutarate adduct)
64c4y90B_



not modelled 14.0 0
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from deinococcus2 radiodurans
65d1suxa_



not modelled 13.9 11
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
66c2x58B_



not modelled 13.9 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: the crystal structure of mfe1 liganded with coa
67d1sw3a_



not modelled 13.7 5
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
68c4y8fA_



not modelled 13.6 11
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from clostridium2 perfringens
69c4mknA_



not modelled 13.6 5
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of chloroplastic triosephosphate isomerase from2 chlamydomonas reinhardtii at 1.1 a of resolution
70c6bveA_



not modelled 13.5 11
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: triosephosphate isomerase of synechocystis in complex with 2-2 phosphoglycolic acid
71c3th6B_



not modelled 13.5 5
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from rhipicephalus2 (boophilus) microplus.
72c2jgqB_



not modelled 13.5 17
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: kinetics and structural properties of triosephosphate2 isomerase from helicobacter pylori
73c5zg5B_



not modelled 13.4 0
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase sadsubaaa mutant from2 opisthorchis viverrini
74d1kv5a_



not modelled 13.3 11
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
75c5xyiE_



not modelled 13.2 12
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s4;
PDBTitle: small subunit of trichomonas vaginalis ribosome
76c1kbpB_



not modelled 13.0 7
PDB header:hydrolase (phosphoric monoester)
Chain: B: PDB Molecule:purple acid phosphatase;
PDBTitle: kidney bean purple acid phosphatase
77c2pjuD_



not modelled 13.0 9
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
78d1o5xa_



not modelled 12.9 22
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
79d1n55a_



not modelled 12.9 0
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
80c4nvtD_



not modelled 12.9 5
PDB header:isomerase
Chain: D: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from brucella2 melitensis
81c5eywB_



not modelled 12.9 0
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of litopenaeus vannamei triosephosphate isomerase2 complexed with 2-phosphoglycolic acid
82d1r2ra_



not modelled 12.6 5
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
83c5ibxB_



not modelled 12.4 5
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: 1.65 angstrom crystal structure of triosephosphate isomerase (tim)2 from streptococcus pneumoniae
84d1neya_



not modelled 12.4 11
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
85d1kfia4



not modelled 12.3 18
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
86d2btma_



not modelled 12.2 11
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
87c1yyaA_



not modelled 12.2 16
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of tt0473, putative triosephosphate isomerase from2 thermus thermophilus hb8
88c6faqA_



not modelled 12.2 13
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding protein;
PDBTitle: structure of h. salinarum rosr (vng0258) grown from kbr
89c5dynA_



not modelled 12.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidase;
PDBTitle: b. fragilis cysteine protease
90c3m9yB_



not modelled 12.2 16
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from methicillin2 resistant staphylococcus aureus at 1.9 angstrom resolution
91d3pmga4



not modelled 12.2 25
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
92c3u5cE_



not modelled 12.2 12
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s4-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
93c4y9aB_



not modelled 12.2 11
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from streptomyces2 coelicolor
94d1mo0a_



not modelled 12.1 11
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
95d1vpqa_



not modelled 12.1 13
Fold:TIM beta/alpha-barrel
Superfamily:TM1631-like
Family:TM1631-like
96c5uprA_



not modelled 12.1 11
PDB header:isomerase
Chain: A: PDB Molecule:triosephosphate isomerase;
PDBTitle: x-ray structure of a putative triosephosphate isomerase from2 toxoplasma gondii me49
97d1b9ba_



not modelled 12.1 11
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
98d1m6ja_



not modelled 12.0 5
Fold:TIM beta/alpha-barrel
Superfamily:Triosephosphate isomerase (TIM)
Family:Triosephosphate isomerase (TIM)
99c3s6dA_



not modelled 12.0 0
PDB header:isomerase
Chain: A: PDB Molecule:putative triosephosphate isomerase;
PDBTitle: crystal structure of a putative triosephosphate isomerase from2 coccidioides immitis

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