Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3785_(-)_4231498_4232571
DateFri Aug 9 18:20:49 BST 2019
Unique Job IDdc478003190e5dd5
SequenceMVTVARRPVC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.377 Y:31.310 Z:31.116
Model (left) based on template c2rkhA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:putative apha-like transcription factor;
PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution
Confidence and coverage
Confidence: 51.2% Coverage: 12%
42 residues ( 12% of your sequence) have been modelled with 51.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2rkhA_
51.2 36
PDB header:transcription
Chain: A: PDB Molecule:putative apha-like transcription factor;
PDBTitle: crystal structure of a putative apha-like transcription factor2 (zp_00208345.1) from magnetospirillum magnetotacticum ms-1 at 2.00 a3 resolution
2c4dt1B_
30.3 36
PDB header:dna binding protein
Chain: B: PDB Molecule:platinum sensitivity protein 3;
PDBTitle: crystal structure of the psy3-csm2 complex
3c2v6xB_
28.5 50
PDB header:protein transport
Chain: B: PDB Molecule:doa4-independent degradation protein 4;
PDBTitle: stractural insight into the interaction between escrt-iii and vps4
4d2pbka1
22.2 35
Fold:Herpes virus serine proteinase, assemblin
Superfamily:Herpes virus serine proteinase, assemblin
Family:Herpes virus serine proteinase, assemblin
5c3njqB_
21.7 29
PDB header:viral protein/inhibitor
Chain: B: PDB Molecule:orf 17;
PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor
6d1at3a_
21.3 46
Fold:Herpes virus serine proteinase, assemblin
Superfamily:Herpes virus serine proteinase, assemblin
Family:Herpes virus serine proteinase, assemblin
7d2cyja1
19.8 22
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
8c2jqmA_
19.0 33
PDB header:transferase
Chain: A: PDB Molecule:envelope protein e;
PDBTitle: yellow fever envelope protein domain iii nmr structure2 (s288-k398)
9c3hjeA_
18.3 32
PDB header:transferase
Chain: A: PDB Molecule:704aa long hypothetical glycosyltransferase;
PDBTitle: crystal structure of sulfolobus tokodaii hypothetical maltooligosyl2 trehalose synthase
10c3egpA_
17.7 28
PDB header:viral protein
Chain: A: PDB Molecule:envelope protein;
PDBTitle: crystal structure analysis of dengue-1 envelope protein2 domain iii
11d2al3a1
17.6 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
12d1iega_
16.3 22
Fold:Herpes virus serine proteinase, assemblin
Superfamily:Herpes virus serine proteinase, assemblin
Family:Herpes virus serine proteinase, assemblin
13c1fx0B_
15.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase beta chain;
PDBTitle: crystal structure of the chloroplast f1-atpase from spinach
14c2vdcI_
15.9 24
PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
15c2h0pA_
15.5 22
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: nmr structure of the dengue-4 virus envelope protein domain2 iii
16d1ok8a1
14.4 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
17d2fmla2
12.4 20
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
18c3nrhA_
12.0 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bf1032;
PDBTitle: crystal structure of protein bf1032 from bacteroides fragilis,2 northeast structural genomics consortium target bfr309
19d1s6na_
11.3 42
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
20d2o3aa1
11.1 29
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
21d2fvta1
not modelled 11.0 18
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
22c3uajA_
not modelled 10.9 22
PDB header:viral protein/immune system
Chain: A: PDB Molecule:envelope protein;
PDBTitle: crystal structure of the envelope glycoprotein ectodomain from dengue2 virus serotype 4 in complex with the fab fragment of the chimpanzee3 monoclonal antibody 5h2
23d2fi9a1
not modelled 10.8 33
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
24c2yrcA_
not modelled 10.7 71
PDB header:protein transport
Chain: A: PDB Molecule:protein transport protein sec23a;
PDBTitle: solution structure of the zf-sec23_sec24 from human sec23a
25c6epkA_
not modelled 10.7 33
PDB header:viral protein
Chain: A: PDB Molecule:envelope protein e;
PDBTitle: crystal structure of the precursor membrane protein-envelope protein2 heterodimer from the yellow fever virus
26c3fz5C_
not modelled 10.3 24
PDB header:isomerase
Chain: C: PDB Molecule:possible 2-hydroxychromene-2-carboxylate isomerase;
PDBTitle: crystal structure of possible 2-hydroxychromene-2-carboxylate2 isomerase from rhodobacter sphaeroides
27c4ip8B_
not modelled 10.3 30
PDB header:protein binding
Chain: B: PDB Molecule:serum amyloid a-1 protein;
PDBTitle: structure of human serum amyloid a1
28d1fx0a3
not modelled 10.0 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
29d1o6ea_
not modelled 9.9 25
Fold:Herpes virus serine proteinase, assemblin
Superfamily:Herpes virus serine proteinase, assemblin
Family:Herpes virus serine proteinase, assemblin
30c2k2eA_
not modelled 9.8 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bp2786;
PDBTitle: solution nmr structure of bordetella pertussis protein2 bp2786, a mth938-like domain. northeast structural3 genomics consortium target ber31
31c5x51X_
not modelled 9.7 38
PDB header:transferase
Chain: X: PDB Molecule:rna polymerase subunit, found in rna polymerase complexes
PDBTitle: rna polymerase ii from komagataella pastoris (type-3 crystal)
32c2h6oA_
not modelled 9.6 19
PDB header:viral protein
Chain: A: PDB Molecule:major outer envelope glycoprotein gp350;
PDBTitle: epstein barr virus major envelope glycoprotein
33c1uzgA_
not modelled 9.5 25
PDB header:viral protein
Chain: A: PDB Molecule:major envelope protein e;
PDBTitle: crystal structure of the dengue type 3 virus envelope2 protein
34c2yxyA_
not modelled 9.3 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical conserved protein, gk0453;
PDBTitle: crystarl structure of hypothetical conserved protein, gk0453
35c5zcrB_
not modelled 9.3 38
PDB header:hydrolase
Chain: B: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: dsm5389 glycosyltrehalose synthase
36d1dqna_
not modelled 9.3 50
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
37c2yy8B_
not modelled 9.1 29
PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
38d1ztxe1
not modelled 9.0 42
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
39c6rdtY_
not modelled 9.0 23
PDB header:proton transport
Chain: Y: PDB Molecule:atp synthase subunit beta;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 composite map
40c4xvwK_
not modelled 8.9 16
PDB header:isomerase
Chain: K: PDB Molecule:dsba-like protein;
PDBTitle: crystal structure of proteus mirabilis scsc in a compact conformation
41d2iida1
not modelled 8.5 20
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
42c3c6dB_
not modelled 8.4 22
PDB header:virus
Chain: B: PDB Molecule:polyprotein;
PDBTitle: the pseudo-atomic structure of dengue immature virus
43d1pjwa_
not modelled 8.2 39
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
44d1z6ma1
not modelled 8.2 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
45d2q4qa1
not modelled 7.9 22
Fold:MTH938-like
Superfamily:MTH938-like
Family:MTH938-like
46c5whaF_
not modelled 7.6 68
PDB header:protein binding
Chain: F: PDB Molecule:miniprotein 225-11;
PDBTitle: kras g12v, bound to gdp and miniprotein 225-11
47c1hznA_
not modelled 7.6 45
PDB header:hormone/growth factor
Chain: A: PDB Molecule:cholecystokinin type a receptor;
PDBTitle: nmr solution structure of the third extracellular loop of2 the cholecystokinin a receptor
48d1na6a2
not modelled 7.6 19
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Type II restriction endonuclease catalytic domain
49d2ifxa1
not modelled 7.5 39
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:MmlI-like
50c6eh1D_
not modelled 7.5 70
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee - expansion state ii
51c6egvD_
not modelled 7.5 70
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee
52c6egxD_
not modelled 7.5 70
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee - expansion state i
53c5oypD_
not modelled 7.5 70
PDB header:virus
Chain: D: PDB Molecule:minor capsid protein micp;
PDBTitle: sacbrood virus of honeybee
54c5lsfD_
not modelled 7.5 70
PDB header:virus
Chain: D: PDB Molecule:vp4;
PDBTitle: sacbrood honeybee virus
55c2ja6L_
not modelled 7.1 38
PDB header:transferase
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 kda
PDBTitle: cpd lesion containing rna polymerase ii elongation complex b
56c6f5dE_
not modelled 7.1 21
PDB header:hydrolase
Chain: E: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: trypanosoma brucei f1-atpase
57c4gxzB_
not modelled 7.1 16
PDB header:isomerase
Chain: B: PDB Molecule:suppression of copper sensitivity protein;
PDBTitle: crystal structure of a periplasmic thioredoxin-like protein from2 salmonella enterica serovar typhimurium
58c2gm2A_
not modelled 7.1 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35
59c5flmL_
not modelled 6.9 31
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: structure of transcribing mammalian rna polymerase ii
60c5j8tA_
not modelled 6.9 0
PDB header:hydrolase
Chain: A: PDB Molecule:choline binding protein;
PDBTitle: nmr structure of excalibur domain of cbpl
61c2yewB_
not modelled 6.9 25
PDB header:virus
Chain: B: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: modeling barmah forest virus structural proteins
62c3nuhB_
not modelled 6.7 57
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function
63d2alaa2
not modelled 6.6 63
Fold:Viral glycoprotein, central and dimerisation domains
Superfamily:Viral glycoprotein, central and dimerisation domains
Family:Viral glycoprotein, central and dimerisation domains
64c4exnF_
not modelled 6.4 62
PDB header:cytokine
Chain: F: PDB Molecule:interleukin-34;
PDBTitle: crystal structure of mouse interleukin-34
65c6eezC_
not modelled 6.4 22
PDB header:isomerase
Chain: C: PDB Molecule:dsba-like disulfide oxidoreductase;
PDBTitle: crystal structure of the thiol-disulfide exchange protein alpha-dsba22 from wolbachia pipientis
66c1kmhA_
not modelled 6.2 11
PDB header:hydrolase
Chain: A: PDB Molecule:atpase alpha subunit;
PDBTitle: crystal structure of spinach chloroplast f1-atpase complexed with2 tentoxin
67c5d50E_
not modelled 6.2 42
PDB header:dna binding protein
Chain: E: PDB Molecule:anti-repressor protein;
PDBTitle: crystal structure of rep-ant complex from salmonella-temperate phage
68c1na6B_
not modelled 6.2 15
PDB header:hydrolase
Chain: B: PDB Molecule:restriction endonuclease ecorii;
PDBTitle: crystal structure of restriction endonuclease ecorii mutant2 r88a
69d1u0bb1
not modelled 6.0 32
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
70d1t1ua2
not modelled 5.9 14
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
71c3h0gL_
not modelled 5.9 33
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
72d1iv8a2
not modelled 5.6 50
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
73c6o55B_
not modelled 5.6 17
PDB header:isomerase
Chain: B: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 (pure) from legionella pneumophila
74c2zkr9_
not modelled 5.6 38
PDB header:ribosomal protein/rna
Chain: 9: PDB Molecule:60s ribosomal protein l32;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
75d1vaea_
not modelled 5.4 18
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
76d3etja1
not modelled 5.4 43
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
77c6a5eD_
not modelled 5.4 21
PDB header:transferase
Chain: D: PDB Molecule:gpi-anchored protein llg2;
PDBTitle: crystal structure of plant peptide ralf23 in complex with fer and llg2
78d1alna2
not modelled 5.3 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
79c1l6jA_
not modelled 5.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:matrix metalloproteinase-9;
PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b).
80c2of6C_
not modelled 5.3 42
PDB header:virus
Chain: C: PDB Molecule:envelope glycoprotein e;
PDBTitle: structure of immature west nile virus
81c4lh9A_
not modelled 5.2 20
PDB header:transcription
Chain: A: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the refolded hood domain (asp256-gly295) of hetr
82c1d6gA_
not modelled 5.2 55
PDB header:hormone/growth factor
Chain: A: PDB Molecule:cholecystokinin type a receptor;
PDBTitle: molecular complex of cholecystokinin-8 and n-terminus of2 the cholecystokinin a receptor by nmr spectroscopy
83c4k90A_
not modelled 5.2 46
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular metalloproteinase mep;
PDBTitle: extracellular metalloproteinase from aspergillus
84c2xznQ_
not modelled 5.1 27
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
85c4cbfE_
not modelled 5.1 25
PDB header:virus
Chain: E: PDB Molecule:envelope protein e;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus

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