Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3792_(-)_4238110_4240041
DateFri Aug 9 18:20:50 BST 2019
Unique Job ID0ba6fe626153ad6e
SequenceMPSRRKSPQF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.760 Y:46.784 Z:81.966
Model (left) based on template c5f15A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
Confidence and coverage
Confidence: 94.0% Coverage: 69%
443 residues ( 69% of your sequence) have been modelled with 94.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5f15A_



94.0 13
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
2c6p25A_



73.7 13
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
3c3wajA_



72.9 13
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
4c4ymkA_



69.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
5c6eznF_



57.7 12
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
6c4fypA_



57.0 17
PDB header:plant protein
Chain: A: PDB Molecule:vegetative storage protein 1;
PDBTitle: crystal structure of plant vegetative storage protein
7c1okgA_



53.9 13
PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
8c4dh4A_



50.6 23
PDB header:isomerase
Chain: A: PDB Molecule:mif;
PDBTitle: macrophage migration inhibitory factor toxoplasma gondii
9c5ir6B_



50.4 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
10c4nsmA_



48.1 43
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like protein sclb;
PDBTitle: crystal structure of the streptococcal collagen-like protein 22 globular domain from invasive m3-type group a streptococcus
11c3utnX_



45.9 22
PDB header:transferase
Chain: X: PDB Molecule:thiosulfate sulfurtransferase tum1;
PDBTitle: crystal structure of tum1 protein from saccharomyces cerevisiae
12c6cuqB_



45.9 11
PDB header:cytokine
Chain: B: PDB Molecule:macrophage migration inhibitory factor-like protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor-like2 protein (ehmif) from entamoeba histolytica
13d1y5ic1



42.1 24
Fold:Heme-binding four-helical bundle
Superfamily:Respiratory nitrate reductase 1 gamma chain
Family:Respiratory nitrate reductase 1 gamma chain
14c2m7gA_



38.6 24
PDB header:cell adhesion, structural protein, elect
Chain: A: PDB Molecule:geopilin domain 1 protein;
PDBTitle: structure of the type iva major pilin from the electrically conductive2 bacterial nanowires of geobacter sulfurreducens
15d2ji7a3



38.1 15
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
16d1ypze2



38.0 37
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
17c5un4C_



37.8 17
PDB header:hydrolase
Chain: C: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of native fused 4-ot
18c1yo8A_



37.7 26
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-2;
PDBTitle: structure of the c-terminal domain of human thrombospondin-2
19c1ux6A_



36.2 30
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-1;
PDBTitle: structure of a thrombospondin c-terminal fragment reveals a novel2 calcium core in the type 3 repeats
20c3zm8A_



36.0 43
PDB header:hydrolase
Chain: A: PDB Molecule:gh26 endo-beta-1,4-mannanase;
PDBTitle: crystal structure of podospora anserina gh26-cbm352 beta-(1,4)-mannanase
21c3sy6A_



not modelled 34.4 37
PDB header:cell adhesion
Chain: A: PDB Molecule:fimbrial protein bf1861;
PDBTitle: crystal structure of a fimbrial protein bf1861 [bacteroides fragilis2 nctc 9343] (bf1861) from bacteroides fragilis nctc 9343 at 1.90 a3 resolution
22d2gdga1



not modelled 33.8 20
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
23c3fbyC_



not modelled 33.7 34
PDB header:cell adhesion
Chain: C: PDB Molecule:cartilage oligomeric matrix protein;
PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein.
24d2d9ra1



not modelled 32.9 30
Fold:Double-split beta-barrel
Superfamily:AF2212/PG0164-like
Family:PG0164-like
25d1gd0a_



not modelled 32.1 18
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
26c4b8yA_



not modelled 32.0 11
PDB header:transport protein/siderophore
Chain: A: PDB Molecule:fhud2;
PDBTitle: ferrichrome-bound fhud2
27c4p55A_



not modelled 31.6 29
PDB header:dna binding protein
Chain: A: PDB Molecule:viral irf2-like protein;
PDBTitle: crystal structure of dna binding domain of k11 from kshv
28d1hxma2



not modelled 30.8 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
29c6ntwA_



not modelled 30.7 17
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:probable l,d-transpeptidase ycbb;
PDBTitle: crystal structure of e. coli ycbb
30c3rceA_



not modelled 30.6 12
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
31c3ufiA_



not modelled 30.5 33
PDB header:cell adhesion
Chain: A: PDB Molecule:hypothetical protein bacova_04980;
PDBTitle: crystal structure of a putative cell adhesion protein (bacova_04980)2 from bacteroides ovatus atcc 8483 at 2.18 a resolution
32c4v3aC_



not modelled 29.8 75
PDB header:transport protein
Chain: C: PDB Molecule:pleurotolysin b;
PDBTitle: membrane bound pleurotolysin prepore (tmh1 lock) trapped with2 engineered disulphide cross-link
33c6hpfA_



not modelled 29.6 60
PDB header:hydrolase
Chain: A: PDB Molecule:endo-b-mannanase;
PDBTitle: structure of inactive e165q mutant of fungal non-cbm carrying gh262 endo-b-mannanase from yunnania penicillata in complex with alpha-62-3 61-di-galactosyl-mannotriose
34c6basA_



not modelled 28.3 26
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase roda;
PDBTitle: crystal structure of thermus thermophilus rod shape determining2 protein roda d255a mutant (q5six3_thet8)
35c4m1eC_



not modelled 27.7 12
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from2 planctomyces limnophilus dsm 3776, nysgrc target 029364.
36c3kopB_



not modelled 27.7 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution
37c3tijA_



not modelled 27.3 16
PDB header:membrane protein
Chain: A: PDB Molecule:nupc family protein;
PDBTitle: crystal structure of a concentrative nucleoside transporter from2 vibrio cholerae
38c3fwtA_



not modelled 27.2 26
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: crystal structure of leishmania major mif2
39c2oq2B_



not modelled 27.2 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase;
PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
40c5flyB_



not modelled 27.0 13
PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-binding periplasmic protein;
PDBTitle: the fhud protein from s.pseudintermedius
41c4k4kA_



not modelled 26.6 42
PDB header:cell adhesion
Chain: A: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bacuni_00621)2 from bacteroides uniformis atcc 8492 at 1.67 a resolution
42c3caiA_



not modelled 26.0 18
PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
43c5l2bC_



not modelled 25.7 19
PDB header:transport protein
Chain: C: PDB Molecule:nucleoside permease;
PDBTitle: structure of cntnw n149s, e332a in an outward-facing state
44d1ulza2



not modelled 25.7 17
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
45d1ku0a_



not modelled 25.6 17
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
46c5zbhA_



not modelled 25.5 15
PDB header:signaling protein
Chain: A: PDB Molecule:neuropeptide y receptor type 1,t4 lysozyme,neuropeptide y
PDBTitle: the crystal structure of human neuropeptide y y1 receptor with bms-2 193885
47c6c14A_



not modelled 25.5 19
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
48c4tvrA_



not modelled 25.4 17
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf2;
PDBTitle: tandem tudor and phd domains of uhrf2
49c5wt2A_



not modelled 24.8 11
PDB header:transferase
Chain: A: PDB Molecule:cysteine desulfurase iscs;
PDBTitle: nifs from helicobacter pylori
50d1n2za_



not modelled 24.1 9
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
51c4or2A_



not modelled 24.1 17
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562, metabotropic glutamate receptor 1;
PDBTitle: human class c g protein-coupled metabotropic glutamate receptor 1 in2 complex with a negative allosteric modulator
52d1wi0a_



not modelled 24.0 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
53c6nqiB_



not modelled 23.4 17
PDB header:splicing
Chain: B: PDB Molecule:pre-mrna splicing factor prp8;
PDBTitle: prp8 rh domain from c. merolae
54c5ip0C_



not modelled 23.4 15
PDB header:structural protein
Chain: C: PDB Molecule:pha granule-associated protein;
PDBTitle: pha binding protein phap (phasin)
55c2i34B_



not modelled 23.2 28
PDB header:hydrolase
Chain: B: PDB Molecule:acid phosphatase;
PDBTitle: the crystal structure of class c acid phosphatase from bacillus2 anthracis with tungstate bound
56c4ic7B_



not modelled 23.2 27
PDB header:transferase
Chain: B: PDB Molecule:dual specificity mitogen-activated protein kinase kinase 5;
PDBTitle: crystal structure of the erk5 kinase domain in complex with an mkk52 binding fragment
57c2hihB_



not modelled 23.1 25
PDB header:hydrolase
Chain: B: PDB Molecule:lipase 46 kda form;
PDBTitle: crystal structure of staphylococcus hyicus lipase
58c5ah1A_



not modelled 22.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:triacylglycerol lipase;
PDBTitle: structure of esta from clostridium botulinum
59c2bvtB_



not modelled 22.3 44
PDB header:hydrolase
Chain: B: PDB Molecule:beta-1,4-mannanase;
PDBTitle: the structure of a modular endo-beta-1,4-mannanase from cellulomonas2 fimi explains the product specificity of glycoside hydrolase family3 26 mannanases.
60c6eazA_



not modelled 22.3 23
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium uptake protein 2, mitochondrial;
PDBTitle: apo structure of the mitochondrial calcium uniporter protein micu2
61c3siiA_



not modelled 22.0 23
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase;
PDBTitle: the x-ray crystal structure of poly(adp-ribose) glycohydrolase bound2 to the inhibitor adp-hpd from thermomonospora curvata
62c4epzA_



not modelled 22.0 25
PDB header:transcription
Chain: A: PDB Molecule:transcription anti-terminator antagonist upxz;
PDBTitle: crystal structure of a transcription anti-terminator antagonist upxz2 (bacuni_04315) from bacteroides uniformis atcc 8492 at 1.68 a3 resolution
63d2abwa1



not modelled 21.8 12
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
64c3b64A_



not modelled 21.7 30
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
65c3pntA_



not modelled 21.7 46
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:nad+-glycohydrolase;
PDBTitle: crystal structure of the streptococcus pyogenes nad+ glycohydrolase2 spn in complex with ifs, the immunity factor for spn
66c5ah0B_



not modelled 21.4 8
PDB header:hydrolase
Chain: B: PDB Molecule:lipase;
PDBTitle: structure of lipase 1 from pelosinus fermentans
67d1ur4a_



not modelled 21.4 22
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
68c3e77A_



not modelled 21.3 15
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase;
PDBTitle: human phosphoserine aminotransferase in complex with plp
69d1ji3a_



not modelled 21.2 17
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
70c3wdrA_



not modelled 21.2 50
PDB header:hydrolase
Chain: A: PDB Molecule:beta-mannanase;
PDBTitle: crystal structure of beta-mannanase from a symbiotic protist of the2 termite reticulitermes speratus complexed with gluco-manno-3 oligosaccharide
71c4qb7A_



not modelled 21.1 33
PDB header:cell adhesion
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a fimbrial protein (bvu_2522) from bacteroides2 vulgatus atcc 8482 at 2.55 a resolution
72c5j1sB_



not modelled 21.1 17
PDB header:hydrolase
Chain: B: PDB Molecule:torsin-1a-interacting protein 2;
PDBTitle: torsina-lull1 complex, h. sapiens, bound to vhh-bs2
73c4kmhB_



not modelled 21.0 43
PDB header:protein binding
Chain: B: PDB Molecule:suppressor of fused homolog;
PDBTitle: crystal structure of suppressor of fused d20
74d1jmxg_



not modelled 20.6 27
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Quinohemoprotein amine dehydrogenase C chain
Family:Quinohemoprotein amine dehydrogenase C chain
75c3t2lA_



not modelled 20.2 42
PDB header:cell adhesion
Chain: A: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution
76c4c82A_



not modelled 20.1 13
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: ispf (plasmodium falciparum) unliganded structure
77d2cyga1



not modelled 20.1 17
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
78c5iwyD_



not modelled 19.9 19
PDB header:lyase
Chain: D: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from bacillus subtitis complexed with cmp and mg2+
79c5f5nA_



not modelled 19.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:monooxygenase;
PDBTitle: the structure of monooxygenase ksta11 in complex with nad and its2 substrate
80d1w23a_



not modelled 19.7 11
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
81d1ux6a2



not modelled 19.6 18
Fold:TSP type-3 repeat
Superfamily:TSP type-3 repeat
Family:TSP type-3 repeat
82c5msmD_



not modelled 19.6 29
PDB header:cell cycle
Chain: D: PDB Molecule:sister chromatid cohesion protein dcc1;
PDBTitle: structure of the dcc1-ctf8-ctf18c trimer
83d2fug21



not modelled 19.6 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:NQO2-like
84c4f6oA_



not modelled 19.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase-1;
PDBTitle: crystal structure of the yeast metacaspase yca1
85c6fkib_



not modelled 19.5 20
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit beta, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
86c3cbwA_



not modelled 19.4 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ydht protein;
PDBTitle: crystal structure of the ydht protein from bacillus subtilis
87c5lgdA_



not modelled 19.4 16
PDB header:cell adhesion
Chain: A: PDB Molecule:platelet glycoprotein 4;
PDBTitle: the cidra domain from mcvar1 pfemp1 bound to cd36
88c6hf4A_



not modelled 19.2 50
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 26;
PDBTitle: the structure of boman26b, a gh26 beta-mannanase from bacteroides2 ovatus, complexed with g1m4
89c3ca8B_



not modelled 19.0 42
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydcf;
PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme
90c1kyqC_



not modelled 19.0 24
PDB header:oxidoreductase, lyase
Chain: C: PDB Molecule:siroheme biosynthesis protein met8;
PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis.
91d1okga1



not modelled 18.8 14
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
92d1kyqa2



not modelled 18.7 18
Fold:Siroheme synthase middle domains-like
Superfamily:Siroheme synthase middle domains-like
Family:Siroheme synthase middle domains-like
93c4f7bA_



not modelled 18.4 21
PDB header:cell adhesion
Chain: A: PDB Molecule:lysosome membrane protein 2;
PDBTitle: structure of the lysosomal domain of limp-2
94c4r6yA_



not modelled 18.4 14
PDB header:transport protein
Chain: A: PDB Molecule:putative 2-aminoethylphosphonate-binding periplasmic
PDBTitle: crystal structure of solute-binding protein stm0429 from salmonella2 enterica subsp. enterica serovar typhimurium str. lt2, target efi-3 510776, a closed conformation, in complex with glycerol and acetate
95c2wqqA_



not modelled 18.4 32
PDB header:transferase
Chain: A: PDB Molecule:alpha-2,3-/2,8-sialyltransferase;
PDBTitle: crystallographic analysis of monomeric cstii
96c5v6hC_



not modelled 18.3 33
PDB header:protein binding
Chain: C: PDB Molecule:pdz domain-containing protein gipc2;
PDBTitle: crystal structure of myosin vi in complex with gh2 domain of gipc2
97c4z8wA_



not modelled 18.0 23
PDB header:allergen
Chain: A: PDB Molecule:major pollen allergen pla l 1;
PDBTitle: crystal structure of the major plantain pollen allergen pla l 1
98c3d8kD_



not modelled 18.0 14
PDB header:hydrolase
Chain: D: PDB Molecule:protein phosphatase 2c;
PDBTitle: crystal structure of a phosphatase from a toxoplasma gondii
99d1g9ka2



not modelled 18.0 26
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain

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Transmembrane helix prediction 

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