Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3793_(embC)_4240041_4243325
DateFri Aug 9 18:20:50 BST 2019
Unique Job IDc0665ccb099601df
SequenceMATEAAPPRI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.211 Y:55.210 Z:55.805
Model (left) based on template c3ptyA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:arabinosyltransferase c;
PDBTitle: crystal structure of the c-terminal extracellular domain of2 mycobacterium tuberculosis embc
Confidence and coverage
Confidence:100.0% Coverage: 26%
284 residues ( 26% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
863 residues ( 79%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ptyA_



100.0 100
PDB header:transferase
Chain: A: PDB Molecule:arabinosyltransferase c;
PDBTitle: crystal structure of the c-terminal extracellular domain of2 mycobacterium tuberculosis embc
2c3bywB_



100.0 25
PDB header:transferase
Chain: B: PDB Molecule:putative arabinofuranosyltransferase;
PDBTitle: crystal structure of an extracellular domain of2 arabinofuranosyltransferase from corynebacterium diphtheriae
3c5f15A_



99.2 13
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
4c3rceA_



98.6 14
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
5c3wajA_



97.5 13
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
6c6p2rB_



93.4 14
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
7c6p25A_



89.0 12
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
8c6eznF_



76.1 10
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
9c6btmD_



74.3 19
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
10c6f0kD_



53.6 17
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
11c2lopA_



46.2 5
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14a;
PDBTitle: backbone structure of human membrane protein tmem14a
12c4rrfD_



38.7 55
PDB header:ligase
Chain: D: PDB Molecule:threonine--trna ligase;
PDBTitle: editing domain of threonyl-trna synthetase from methanococcus2 jannaschii with l-ser3aa
13c2hl2A_



37.0 55
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate
14c6iedA_



35.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
15c5zr1F_



34.4 24
PDB header:dna binding protein/dna
Chain: F: PDB Molecule:origin recognition complex subunit 6;
PDBTitle: saccharomyces cerevisiae origin recognition complex bound to a 72-bp2 origin dna containing acs and b1 element
16c3jd8A_



33.5 25
PDB header:membrane protein
Chain: A: PDB Molecule:niemann-pick c1 protein;
PDBTitle: cryo-em structure of the full-length human npc1 at 4.4 angstrom
17c5khnB_



32.7 20
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
18c4rrcA_



31.9 55
PDB header:ligase
Chain: A: PDB Molecule:probable threonine--trna ligase 2;
PDBTitle: n-terminal editing domain of threonyl-trna synthetase from aeropyrum2 pernix with l-thr3aa (snapshot 3)
19c4rlrA_



31.8 29
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c, 1 heme-binding site;
PDBTitle: structure of monoheme cytochrome pcch from geobacter sulfurreducens
20c5x5iC_



29.6 17
PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional regulator rcda;
PDBTitle: the x-ray crystal structure of a tetr family transcription regulator2 rcda involved in the regulation of biofilm formation in escherichia3 coli
21c2m20B_



not modelled 29.5 26
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
22c2mc7A_



not modelled 27.6 44
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
23d1gmnb1



not modelled 23.1 40
Fold:Hairpin loop containing domain-like
Superfamily:Hairpin loop containing domain-like
Family:Hairpin loop containing domain
24c6dmoA_



not modelled 23.0 13
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
25c6ajjA_



not modelled 22.8 14
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
26c2losA_



not modelled 21.3 10
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14c;
PDBTitle: backbone structure of human membrane protein tmem14c
27d3cx5c1



not modelled 19.7 25
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
28d1rwua_



not modelled 19.7 33
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:YbeD-like
29c1rwuA_



not modelled 19.7 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0250 protein ybed;
PDBTitle: solution structure of conserved protein ybed from e. coli
30d1rc2a_



not modelled 19.1 18
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
31c5v2dA_



not modelled 18.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:dioxygenase;
PDBTitle: crystal structure of pseudomonas brassicacearum lignostilbene2 dioxygenase
32c1emzA_



not modelled 18.0 67
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein e1;
PDBTitle: solution structure of fragment (350-370) of the2 transmembrane domain of hepatitis c envelope glycoprotein3 e1
33c5ovyA_



not modelled 17.7 24
PDB header:dna binding protein
Chain: A: PDB Molecule:putative transcriptional regulator, tetr family;
PDBTitle: crystal structure of mab_4384 tetr
34c4nhyC_



not modelled 17.0 22
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: C: PDB Molecule:2-oxoglutarate and iron-dependent oxygenase domain-
PDBTitle: crystal structure of human ogfod1, 2-oxoglutarate and iron-dependent2 oxygenase domain containing 1, in complex with pyridine-2,4-3 dicarboxylic acid (2,4-pdca)
35c6cfwE_



not modelled 16.8 12
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
36d1ppjc1



not modelled 16.6 13
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
37c5j54A_



not modelled 16.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase;
PDBTitle: the structure and mechanism of nov1, a resveratrol-cleaving2 dioxygenase
38c2n2aA_



not modelled 16.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
39c3zqiB_



not modelled 15.8 14
PDB header:transcription
Chain: B: PDB Molecule:tetracycline repressor protein class b from transposon
PDBTitle: structure of tetracycline repressor in complex with inducer peptide-2 tip2
40c5u90A_



not modelled 15.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase 1;
PDBTitle: crystal structure of co-cao1 in complex with resveratrol
41c1hymB_



not modelled 14.9 32
PDB header:hydrolase (serine proteinase)
Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
42c6ithA_



not modelled 14.9 35
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
43c2h31A_



not modelled 14.1 15
PDB header:ligase, lyase
Chain: A: PDB Molecule:multifunctional protein ade2;
PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis
44c2y0nE_



not modelled 13.9 50
PDB header:transcription
Chain: E: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
45c1t0jA_



not modelled 13.4 4
PDB header:signaling protein
Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a;
PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit
46c2y0nG_



not modelled 13.4 63
PDB header:transcription
Chain: G: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
47c2y0nH_



not modelled 13.4 63
PDB header:transcription
Chain: H: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
48c3fsnA_



not modelled 12.4 36
PDB header:isomerase
Chain: A: PDB Molecule:retinal pigment epithelium-specific 65 kda protein;
PDBTitle: crystal structure of rpe65 at 2.14 angstrom resolution
49d1fpoa1



not modelled 12.3 33
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
50d1bdsa_



not modelled 12.2 45
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
51c1bdsA_



not modelled 12.2 45
PDB header:anti-hypertensive, anti-viral protein
Chain: A: PDB Molecule:bds-i;
PDBTitle: determination of the three-dimensional solution structure of the2 antihypertensive and antiviral protein bds-i from the sea anemone3 anemonia sulcata. a study using nuclear magnetic resonance and hybrid4 distance geometry-dynamical simulated annealing
52c1w8jD_



not modelled 12.2 21
PDB header:motor protein
Chain: D: PDB Molecule:myosin va;
PDBTitle: crystal structure of myosin v motor domain -2 nucleotide-free
53d1iyjb3



not modelled 11.8 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
54c1ldaA_



not modelled 11.5 18
PDB header:transport protein
Chain: A: PDB Molecule:glycerol uptake facilitator protein;
PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
55d1fx8a_



not modelled 11.5 18
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
56c4rfuB_



not modelled 11.5 22
PDB header:viral protein
Chain: B: PDB Molecule:coat protein;
PDBTitle: crystal structure of truncated p-domain from grouper nervous necrosis2 virus capsid protein at 1.2a
57c2pptA_



not modelled 11.4 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
58c5wcoC_



not modelled 11.3 57
PDB header:viral protein
Chain: C: PDB Molecule:ns2;
PDBTitle: matrix protein (m1) of infectious salmon anaemia virus
59d1y0ja1



not modelled 11.3 38
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
60d2do3a1



not modelled 11.2 17
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:SPT5 KOW domain-like
61d2iela1



not modelled 11.0 27
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
62c4s21B_



not modelled 11.0 36
PDB header:signaling protein
Chain: B: PDB Molecule:bacteriophytochrome (light-regulated signal transduction
PDBTitle: crystal structure of the photosensory core module of2 bacteriophytochrome rpa3015 from r. palustris
63c5i0hA_



not modelled 10.8 17
PDB header:motor protein
Chain: A: PDB Molecule:unconventional myosin-x;
PDBTitle: crystal structure of myosin x motor domain in pre-powerstroke state
64c2kcyA_



not modelled 10.8 19
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d
65c4z9cA_



not modelled 10.7 26
PDB header:transferase
Chain: A: PDB Molecule:pertussis toxin-like subunit arta;
PDBTitle: ecpltab oxidized
66c6ir8A_



not modelled 10.7 19
PDB header:transcription/dna
Chain: A: PDB Molecule:oswrky45;
PDBTitle: rice wrky/dna complex
67c5v7pA_



not modelled 10.7 7
PDB header:transferase
Chain: A: PDB Molecule:protein-s-isoprenylcysteine o-methyltransferase;
PDBTitle: atomic structure of the eukaryotic intramembrane ras methyltransferase2 icmt (isoprenylcysteine carboxyl methyltransferase), in complex with3 a monobody
68c4ruvA_



not modelled 10.5 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin 2 from staphylococcus aureus nctc8325
69c5dynA_



not modelled 10.5 33
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidase;
PDBTitle: b. fragilis cysteine protease
70c4zg4E_



not modelled 10.3 10
PDB header:motor protein
Chain: E: PDB Molecule:myosin-vc;
PDBTitle: myosin vc pre-powerstroke
71c6f0kA_



not modelled 10.3 22
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
72d2joqa1



not modelled 10.2 22
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:HP0495-like
73c1iyjB_



not modelled 10.2 21
PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer susceptibility;
PDBTitle: structure of a brca2-dss1 complex
74d1oedc_



not modelled 10.2 29
Fold:Neurotransmitter-gated ion-channel transmembrane pore
Superfamily:Neurotransmitter-gated ion-channel transmembrane pore
Family:Neurotransmitter-gated ion-channel transmembrane pore
75c2biwC_



not modelled 10.2 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase;
PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme
76c6d6vE_



not modelled 10.2 42
PDB header:replication
Chain: E: PDB Molecule:telomerase holoenzyme teb2 subunit;
PDBTitle: cryoem structure of tetrahymena telomerase with telomeric dna at 4.82 angstrom resolution
77c3d7rB_



not modelled 10.2 8
PDB header:hydrolase
Chain: B: PDB Molecule:esterase;
PDBTitle: crystal structure of a putative esterase from staphylococcus aureus
78c2lx0A_



not modelled 10.1 31
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
79d1osna_



not modelled 10.0 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
80c4xesA_



not modelled 10.0 9
PDB header:signaling protein, hydrolase
Chain: A: PDB Molecule:neurotensin receptor type 1, endolysin chimera;
PDBTitle: structure of active-like neurotensin receptor
81c2k58B_



not modelled 9.7 29
PDB header:transport protein
Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: nmr structures of the first transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit
82c5j7dG_



not modelled 9.7 16
PDB header:de novo protein
Chain: G: PDB Molecule:designed thioredoxin df106;
PDBTitle: computationally designed thioredoxin df106
83c2mn8A_



not modelled 9.6 47
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: nmr structure of a peptoid analogue of maculatin g15 containing cis-2 nleu at position 13
84c2mn9A_



not modelled 9.6 47
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: peptoid analogue of maculatin g15 - peptoid trans-nleu at position 13
85c2b2hA_



not modelled 9.6 14
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
86c3llqB_



not modelled 9.5 19
PDB header:membrane protein
Chain: B: PDB Molecule:aquaporin z 2;
PDBTitle: aquaporin structure from plant pathogen agrobacterium tumerfaciens
87c3npeA_



not modelled 9.5 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen
88c6ojrA_



not modelled 9.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:lignostilbene-alpha,beta-dioxygenase isozyme i;
PDBTitle: crystal structure of sphingomonas paucimobilis tmy1009 apo-lsda
89c5n8nR_



not modelled 9.5 48
PDB header:structural protein
Chain: R: PDB Molecule:evpb family type vi secretion protein;
PDBTitle: contracted sheath of a pseudomonas aeruginosa type six secretion2 system consisting of tssb1 and tssc1
90c2pxgA_



not modelled 9.4 30
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein;
PDBTitle: nmr solution structure of omla
91d1bccc2



not modelled 9.4 15
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
92c6ohuC_



not modelled 9.3 15
PDB header:membrane protein, isomerase/inhibitor
Chain: C: PDB Molecule:3-beta-hydroxysteroid-delta(8),delta(7)-isomerase;
PDBTitle: structure of ebp and tamoxifen
93c2a2jA_



not modelled 9.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
94c2mmjA_



not modelled 9.2 47
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: structure of a peptoid analogue of maculatin g15 in dpc micelles
95c4wkkA_



not modelled 9.2 36
PDB header:signaling protein
Chain: A: PDB Molecule:bacteriophytochrome protein;
PDBTitle: the photosensory module (pas-gaf-phy) of the bacterial phytochrome2 agp1 (atbphp1) in the pr form, chromophore modelled with an exocyclic3 double bond at pyrrole ring a.
96d1gpqa_



not modelled 9.2 22
Fold:Inhibitor of vertebrate lysozyme, Ivy
Superfamily:Inhibitor of vertebrate lysozyme, Ivy
Family:Inhibitor of vertebrate lysozyme, Ivy
97c2lonA_



not modelled 9.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
98c4huqS_



not modelled 9.1 13
PDB header:hydrolase
Chain: S: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transporter
99c5udtD_



not modelled 9.0 17
PDB header:transferase
Chain: D: PDB Molecule:lactate racemization operon protein lare;
PDBTitle: lare, a sulfur transferase involved in synthesis of the cofactor for2 lactate racemase, in complex with amp

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below