Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3794_(embA)_4243411_4246695
DateFri Aug 9 18:20:50 BST 2019
Unique Job IDe8cb4f68b0d6eafb
SequenceVPHDGNERSH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.688 Y:55.096 Z:58.019
Model (left) based on template c3ptyA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:arabinosyltransferase c;
PDBTitle: crystal structure of the c-terminal extracellular domain of2 mycobacterium tuberculosis embc
Confidence and coverage
Confidence:100.0% Coverage: 26%
281 residues ( 26% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
866 residues ( 79%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ptyA_
100.0 45
PDB header:transferase
Chain: A: PDB Molecule:arabinosyltransferase c;
PDBTitle: crystal structure of the c-terminal extracellular domain of2 mycobacterium tuberculosis embc
2c3bywB_
100.0 31
PDB header:transferase
Chain: B: PDB Molecule:putative arabinofuranosyltransferase;
PDBTitle: crystal structure of an extracellular domain of2 arabinofuranosyltransferase from corynebacterium diphtheriae
3c5f15A_
99.1 14
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
4c3rceA_
98.5 13
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
5c3wajA_
96.0 14
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
6c6p2rB_
94.4 10
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
7c6p25A_
91.7 13
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
8c6btmD_
75.3 20
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
9c6eznF_
52.9 12
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
10c6f0kD_
51.1 21
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
11c4rrfD_
37.6 45
PDB header:ligase
Chain: D: PDB Molecule:threonine--trna ligase;
PDBTitle: editing domain of threonyl-trna synthetase from methanococcus2 jannaschii with l-ser3aa
12c2hl2A_
35.8 45
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate
13c2lopA_
35.4 13
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14a;
PDBTitle: backbone structure of human membrane protein tmem14a
14d1iyjb3
34.2 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
15c3jd8A_
31.8 19
PDB header:membrane protein
Chain: A: PDB Molecule:niemann-pick c1 protein;
PDBTitle: cryo-em structure of the full-length human npc1 at 4.4 angstrom
16c4rlrA_
31.4 34
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c, 1 heme-binding site;
PDBTitle: structure of monoheme cytochrome pcch from geobacter sulfurreducens
17c4rrcA_
30.2 45
PDB header:ligase
Chain: A: PDB Molecule:probable threonine--trna ligase 2;
PDBTitle: n-terminal editing domain of threonyl-trna synthetase from aeropyrum2 pernix with l-thr3aa (snapshot 3)
18c6ajjA_
28.9 14
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
19c5x5iC_
28.4 26
PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional regulator rcda;
PDBTitle: the x-ray crystal structure of a tetr family transcription regulator2 rcda involved in the regulation of biofilm formation in escherichia3 coli
20c2mc7A_
25.6 44
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
21c6iedA_
not modelled 23.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
22c5zr1F_
not modelled 22.8 13
PDB header:dna binding protein/dna
Chain: F: PDB Molecule:origin recognition complex subunit 6;
PDBTitle: saccharomyces cerevisiae origin recognition complex bound to a 72-bp2 origin dna containing acs and b1 element
23d1gmnb1
not modelled 22.5 50
Fold:Hairpin loop containing domain-like
Superfamily:Hairpin loop containing domain-like
Family:Hairpin loop containing domain
24c1iyjB_
not modelled 19.9 23
PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer susceptibility;
PDBTitle: structure of a brca2-dss1 complex
25c3x27C_
not modelled 18.2 29
PDB header:lyase
Chain: C: PDB Molecule:cucumopine synthase;
PDBTitle: structure of mcbb in complex with tryptophan
26c6dmoA_
not modelled 17.9 16
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
27d1miua3
not modelled 17.6 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
28c2losA_
not modelled 17.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14c;
PDBTitle: backbone structure of human membrane protein tmem14c
29c5v2dA_
not modelled 17.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:dioxygenase;
PDBTitle: crystal structure of pseudomonas brassicacearum lignostilbene2 dioxygenase
30c2m20B_
not modelled 17.1 22
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
31c2a2jA_
not modelled 16.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
32d1rwua_
not modelled 16.4 22
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:YbeD-like
33c1rwuA_
not modelled 16.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0250 protein ybed;
PDBTitle: solution structure of conserved protein ybed from e. coli
34c4xesA_
not modelled 15.5 9
PDB header:signaling protein, hydrolase
Chain: A: PDB Molecule:neurotensin receptor type 1, endolysin chimera;
PDBTitle: structure of active-like neurotensin receptor
35c1mjeA_
not modelled 15.3 26
PDB header:gene regulation/antitumor protein/dna
Chain: A: PDB Molecule:breast cancer 2;
PDBTitle: structure of a brca2-dss1-ssdna complex
36c3b9yA_
not modelled 15.0 19
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
37d1rc2a_
not modelled 14.9 15
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
38d1osna_
not modelled 14.8 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
39c5j54A_
not modelled 14.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase;
PDBTitle: the structure and mechanism of nov1, a resveratrol-cleaving2 dioxygenase
40c1emzA_
not modelled 14.1 44
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein e1;
PDBTitle: solution structure of fragment (350-370) of the2 transmembrane domain of hepatitis c envelope glycoprotein3 e1
41c1hymB_
not modelled 13.8 26
PDB header:hydrolase (serine proteinase)
Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
42c2zopA_
not modelled 13.7 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein tthb164;
PDBTitle: x-ray crystal structure of a crispr-associated cmr5 family2 protein from thermus thermophilus hb8
43c5u90A_
not modelled 13.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase 1;
PDBTitle: crystal structure of co-cao1 in complex with resveratrol
44c2y0nE_
not modelled 13.7 50
PDB header:transcription
Chain: E: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
45c6ithA_
not modelled 13.4 29
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
46c2y0nG_
not modelled 13.3 56
PDB header:transcription
Chain: G: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
47c2y0nH_
not modelled 13.3 56
PDB header:transcription
Chain: H: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
48c2h9aA_
not modelled 13.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron-sulfur
PDBTitle: corrinoid iron-sulfur protein
49c2pptA_
not modelled 12.9 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
50c4djeE_
not modelled 12.8 10
PDB header:transferase/vitamin-binding protein
Chain: E: PDB Molecule:corrinoid/iron-sulfur protein large subunit;
PDBTitle: crystal structure of folate-bound corrinoid iron-sulfur protein2 (cfesp) in complex with its methyltransferase (metr), co-crystallized3 with folate
51c3zqiB_
not modelled 12.6 17
PDB header:transcription
Chain: B: PDB Molecule:tetracycline repressor protein class b from transposon
PDBTitle: structure of tetracycline repressor in complex with inducer peptide-2 tip2
52c4huqS_
not modelled 12.6 17
PDB header:hydrolase
Chain: S: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transporter
53c2yclA_
not modelled 11.7 17
PDB header:transferase
Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron-sulfur
PDBTitle: complete structure of the corrinoid,iron-sulfur protein including2 the n-terminal domain with a 4fe-4s cluster
54c4z9cA_
not modelled 11.7 23
PDB header:transferase
Chain: A: PDB Molecule:pertussis toxin-like subunit arta;
PDBTitle: ecpltab oxidized
55c2hxoB_
not modelled 11.4 8
PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of the transcriptional regulator sco7222, a tetr from2 streptomyces coelicolor
56c1t0jA_
not modelled 11.4 4
PDB header:signaling protein
Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a;
PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit
57c1miuA_
not modelled 11.1 21
PDB header:gene regulation/antitumor protein
Chain: A: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: structure of a brca2-dss1 complex
58d1bdsa_
not modelled 11.1 36
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
59c1bdsA_
not modelled 11.1 36
PDB header:anti-hypertensive, anti-viral protein
Chain: A: PDB Molecule:bds-i;
PDBTitle: determination of the three-dimensional solution structure of the2 antihypertensive and antiviral protein bds-i from the sea anemone3 anemonia sulcata. a study using nuclear magnetic resonance and hybrid4 distance geometry-dynamical simulated annealing
60c4ruvA_
not modelled 11.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin 2 from staphylococcus aureus nctc8325
61d2a2ja1
not modelled 11.0 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
62c5wcoC_
not modelled 11.0 57
PDB header:viral protein
Chain: C: PDB Molecule:ns2;
PDBTitle: matrix protein (m1) of infectious salmon anaemia virus
63c2q24A_
not modelled 11.0 24
PDB header:transcription
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor
64c3fsnA_
not modelled 10.8 43
PDB header:isomerase
Chain: A: PDB Molecule:retinal pigment epithelium-specific 65 kda protein;
PDBTitle: crystal structure of rpe65 at 2.14 angstrom resolution
65c5j7dG_
not modelled 10.7 9
PDB header:de novo protein
Chain: G: PDB Molecule:designed thioredoxin df106;
PDBTitle: computationally designed thioredoxin df106
66c4gkfA_
not modelled 10.7 25
PDB header:unknown function
Chain: A: PDB Molecule:crispr system cmr subunit cmr5;
PDBTitle: crystal structure and characterization of cmr5 protein from pyrococcus2 furiosus
67c4s21B_
not modelled 10.5 20
PDB header:signaling protein
Chain: B: PDB Molecule:bacteriophytochrome (light-regulated signal transduction
PDBTitle: crystal structure of the photosensory core module of2 bacteriophytochrome rpa3015 from r. palustris
68d1fx8a_
not modelled 9.9 16
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
69c1ldaA_
not modelled 9.9 16
PDB header:transport protein
Chain: A: PDB Molecule:glycerol uptake facilitator protein;
PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
70c5d7tC_
not modelled 9.9 20
PDB header:transport protein
Chain: C: PDB Molecule:s-component for folate;
PDBTitle: folate ecf transporter: apo state
71c6fhtB_
not modelled 9.8 21
PDB header:lyase
Chain: B: PDB Molecule:bacteriophytochrome,adenylate cyclase;
PDBTitle: crystal structure of an artificial phytochrome regulated2 adenylate/guanylate cyclase in its dark adapted pr form
72c5v7pA_
not modelled 9.5 24
PDB header:transferase
Chain: A: PDB Molecule:protein-s-isoprenylcysteine o-methyltransferase;
PDBTitle: atomic structure of the eukaryotic intramembrane ras methyltransferase2 icmt (isoprenylcysteine carboxyl methyltransferase), in complex with3 a monobody
73d1fpoa1
not modelled 9.5 25
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
74c2n2aA_
not modelled 9.5 22
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
75c2i9hA_
not modelled 9.3 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin i;
PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1)
76c6ir8A_
not modelled 9.3 19
PDB header:transcription/dna
Chain: A: PDB Molecule:oswrky45;
PDBTitle: rice wrky/dna complex
77c4wkkA_
not modelled 9.2 24
PDB header:signaling protein
Chain: A: PDB Molecule:bacteriophytochrome protein;
PDBTitle: the photosensory module (pas-gaf-phy) of the bacterial phytochrome2 agp1 (atbphp1) in the pr form, chromophore modelled with an exocyclic3 double bond at pyrrole ring a.
78c4gicB_
not modelled 9.2 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of a putative histidinol dehydrogenase (target psi-2 014034) from methylococcus capsulatus
79c6g9oA_
not modelled 9.2 21
PDB header:membrane protein
Chain: A: PDB Molecule:volume-regulated anion channel subunit lrrc8a;
PDBTitle: structure of full-length homomeric mlrrc8a volume-regulated anion2 channel at 4.25 a resolution
80c2rekA_
not modelled 9.2 17
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator
81c4anjA_
not modelled 9.1 10
PDB header:motor protein/metal-bindng protein
Chain: A: PDB Molecule:unconventional myosin-vi, green fluorescent protein;
PDBTitle: myosin vi (mdinsert2-gfp fusion) pre-powerstroke state (mg.adp.alf4)
82d2oeba1
not modelled 9.1 19
Fold:ATPD N-terminal domain-like
Superfamily:AF1862-like
Family:Cas Cmr5-like
83d1y0ja1
not modelled 9.1 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
84c2biwC_
not modelled 9.1 37
PDB header:oxidoreductase
Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase;
PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme
85c5dynA_
not modelled 9.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidase;
PDBTitle: b. fragilis cysteine protease
86c2an1D_
not modelled 9.0 13
PDB header:transferase
Chain: D: PDB Molecule:putative kinase;
PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
87c2cdpC_
not modelled 8.9 16
PDB header:hydrolase
Chain: C: PDB Molecule:beta-agarase 1;
PDBTitle: structure of a cbm6 in complex with neoagarohexaose
88c6d6vE_
not modelled 8.9 33
PDB header:replication
Chain: E: PDB Molecule:telomerase holoenzyme teb2 subunit;
PDBTitle: cryoem structure of tetrahymena telomerase with telomeric dna at 4.82 angstrom resolution
89c2bgpA_
not modelled 8.8 9
PDB header:carbohydrate binding protein
Chain: A: PDB Molecule:endo-b1,4-mannanase 5c;
PDBTitle: mannan binding module from man5c in bound conformation
90c2k58B_
not modelled 8.8 24
PDB header:transport protein
Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: nmr structures of the first transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit
91c4rfuB_
not modelled 8.6 23
PDB header:viral protein
Chain: B: PDB Molecule:coat protein;
PDBTitle: crystal structure of truncated p-domain from grouper nervous necrosis2 virus capsid protein at 1.2a
92c2wvrC_
not modelled 8.5 14
PDB header:replication
Chain: C: PDB Molecule:dna replication factor cdt1;
PDBTitle: human cdt1:geminin complex
93c2mn8A_
not modelled 8.4 35
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: nmr structure of a peptoid analogue of maculatin g15 containing cis-2 nleu at position 13
94c2mn9A_
not modelled 8.4 35
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: peptoid analogue of maculatin g15 - peptoid trans-nleu at position 13
95c6ojrA_
not modelled 8.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:lignostilbene-alpha,beta-dioxygenase isozyme i;
PDBTitle: crystal structure of sphingomonas paucimobilis tmy1009 apo-lsda
96d1p6xa_
not modelled 8.3 27
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
97c2lx0A_
not modelled 8.3 25
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
98d1oedc_
not modelled 8.3 23
Fold:Neurotransmitter-gated ion-channel transmembrane pore
Superfamily:Neurotransmitter-gated ion-channel transmembrane pore
Family:Neurotransmitter-gated ion-channel transmembrane pore
99c3npeA_
not modelled 8.3 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below