Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3795_(embB)_4246692_4249988
DateFri Aug 9 18:20:50 BST 2019
Unique Job IDad895cb3fa035f93
SequenceMTQCASRRKS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.405 Y:56.974 Z:52.993
Model (left) based on template c3ptyA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:arabinosyltransferase c;
PDBTitle: crystal structure of the c-terminal extracellular domain of2 mycobacterium tuberculosis embc
Confidence and coverage
Confidence:100.0% Coverage: 25%
279 residues ( 25% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
864 residues ( 79%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ptyA_
100.0 51
PDB header:transferase
Chain: A: PDB Molecule:arabinosyltransferase c;
PDBTitle: crystal structure of the c-terminal extracellular domain of2 mycobacterium tuberculosis embc
2c3bywB_
100.0 30
PDB header:transferase
Chain: B: PDB Molecule:putative arabinofuranosyltransferase;
PDBTitle: crystal structure of an extracellular domain of2 arabinofuranosyltransferase from corynebacterium diphtheriae
3c5f15A_
99.3 13
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
4c3rceA_
98.4 11
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
5c3wajA_
96.6 15
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
6c6p2rB_
92.3 13
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
7c6p25A_
88.2 12
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
8c6eznF_
83.3 11
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
9c6btmD_
82.3 22
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
10c6f0kD_
66.8 15
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
11c2lopA_
44.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14a;
PDBTitle: backbone structure of human membrane protein tmem14a
12c4rrfD_
38.2 45
PDB header:ligase
Chain: D: PDB Molecule:threonine--trna ligase;
PDBTitle: editing domain of threonyl-trna synthetase from methanococcus2 jannaschii with l-ser3aa
13c2hl2A_
36.4 45
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate
14c4rlrA_
32.9 26
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c, 1 heme-binding site;
PDBTitle: structure of monoheme cytochrome pcch from geobacter sulfurreducens
15c5zr1F_
32.7 17
PDB header:dna binding protein/dna
Chain: F: PDB Molecule:origin recognition complex subunit 6;
PDBTitle: saccharomyces cerevisiae origin recognition complex bound to a 72-bp2 origin dna containing acs and b1 element
16c4rrcA_
30.6 45
PDB header:ligase
Chain: A: PDB Molecule:probable threonine--trna ligase 2;
PDBTitle: n-terminal editing domain of threonyl-trna synthetase from aeropyrum2 pernix with l-thr3aa (snapshot 3)
17c5x5iC_
28.8 17
PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional regulator rcda;
PDBTitle: the x-ray crystal structure of a tetr family transcription regulator2 rcda involved in the regulation of biofilm formation in escherichia3 coli
18c3jd8A_
28.0 25
PDB header:membrane protein
Chain: A: PDB Molecule:niemann-pick c1 protein;
PDBTitle: cryo-em structure of the full-length human npc1 at 4.4 angstrom
19d1gmnb1
22.5 50
Fold:Hairpin loop containing domain-like
Superfamily:Hairpin loop containing domain-like
Family:Hairpin loop containing domain
20d1iyjb3
21.3 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
21c5j7dG_
not modelled 21.2 9
PDB header:de novo protein
Chain: G: PDB Molecule:designed thioredoxin df106;
PDBTitle: computationally designed thioredoxin df106
22c1rwuA_
not modelled 20.3 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0250 protein ybed;
PDBTitle: solution structure of conserved protein ybed from e. coli
23d1rwua_
not modelled 20.3 33
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:YbeD-like
24c2losA_
not modelled 18.1 12
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 14c;
PDBTitle: backbone structure of human membrane protein tmem14c
25c5v2dA_
not modelled 18.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:dioxygenase;
PDBTitle: crystal structure of pseudomonas brassicacearum lignostilbene2 dioxygenase
26c1hymB_
not modelled 17.8 32
PDB header:hydrolase (serine proteinase)
Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
27c4gicB_
not modelled 17.7 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of a putative histidinol dehydrogenase (target psi-2 014034) from methylococcus capsulatus
28c6fhtB_
not modelled 17.7 22
PDB header:lyase
Chain: B: PDB Molecule:bacteriophytochrome,adenylate cyclase;
PDBTitle: crystal structure of an artificial phytochrome regulated2 adenylate/guanylate cyclase in its dark adapted pr form
29c6dmoA_
not modelled 16.8 22
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
30c5ovyA_
not modelled 16.7 18
PDB header:dna binding protein
Chain: A: PDB Molecule:putative transcriptional regulator, tetr family;
PDBTitle: crystal structure of mab_4384 tetr
31c1emzA_
not modelled 16.2 33
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein e1;
PDBTitle: solution structure of fragment (350-370) of the2 transmembrane domain of hepatitis c envelope glycoprotein3 e1
32c2mc7A_
not modelled 15.7 25
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
33c5j54A_
not modelled 15.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase;
PDBTitle: the structure and mechanism of nov1, a resveratrol-cleaving2 dioxygenase
34c2m20B_
not modelled 14.6 26
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
35c5u90A_
not modelled 14.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:carotenoid oxygenase 1;
PDBTitle: crystal structure of co-cao1 in complex with resveratrol
36d1rc2a_
not modelled 14.3 13
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
37c6ithA_
not modelled 14.1 35
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
38c2y0nE_
not modelled 13.5 60
PDB header:transcription
Chain: E: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
39c2pptA_
not modelled 13.5 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
40c3zqiB_
not modelled 13.3 14
PDB header:transcription
Chain: B: PDB Molecule:tetracycline repressor protein class b from transposon
PDBTitle: structure of tetracycline repressor in complex with inducer peptide-2 tip2
41c1t0jA_
not modelled 13.1 7
PDB header:signaling protein
Chain: A: PDB Molecule:voltage-gated calcium channel subunit beta2a;
PDBTitle: crystal structure of a complex between voltage-gated calcium channel2 beta2a subunit and a peptide of the alpha1c subunit
42c4z9cA_
not modelled 12.9 19
PDB header:transferase
Chain: A: PDB Molecule:pertussis toxin-like subunit arta;
PDBTitle: ecpltab oxidized
43c2y0nG_
not modelled 12.9 75
PDB header:transcription
Chain: G: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
44c2y0nH_
not modelled 12.9 75
PDB header:transcription
Chain: H: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of the complex between dosage2 compensation factors msl1 and msl3
45c4s21B_
not modelled 12.4 19
PDB header:signaling protein
Chain: B: PDB Molecule:bacteriophytochrome (light-regulated signal transduction
PDBTitle: crystal structure of the photosensory core module of2 bacteriophytochrome rpa3015 from r. palustris
46c1bdsA_
not modelled 12.3 45
PDB header:anti-hypertensive, anti-viral protein
Chain: A: PDB Molecule:bds-i;
PDBTitle: determination of the three-dimensional solution structure of the2 antihypertensive and antiviral protein bds-i from the sea anemone3 anemonia sulcata. a study using nuclear magnetic resonance and hybrid4 distance geometry-dynamical simulated annealing
47d1bdsa_
not modelled 12.3 45
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
48c4huqS_
not modelled 12.0 22
PDB header:hydrolase
Chain: S: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transporter
49c4ruvA_
not modelled 11.3 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin 2 from staphylococcus aureus nctc8325
50d1miua3
not modelled 11.0 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
51c2zopA_
not modelled 11.0 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein tthb164;
PDBTitle: x-ray crystal structure of a crispr-associated cmr5 family2 protein from thermus thermophilus hb8
52c3fsnA_
not modelled 11.0 36
PDB header:isomerase
Chain: A: PDB Molecule:retinal pigment epithelium-specific 65 kda protein;
PDBTitle: crystal structure of rpe65 at 2.14 angstrom resolution
53d1osna_
not modelled 11.0 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
54c2lonA_
not modelled 10.6 13
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
55c1miuA_
not modelled 10.5 23
PDB header:gene regulation/antitumor protein
Chain: A: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: structure of a brca2-dss1 complex
56d2joqa1
not modelled 10.5 22
Fold:Ferredoxin-like
Superfamily:YbeD/HP0495-like
Family:HP0495-like
57c1w8jD_
not modelled 10.2 28
PDB header:motor protein
Chain: D: PDB Molecule:myosin va;
PDBTitle: crystal structure of myosin v motor domain -2 nucleotide-free
58d1fpoa1
not modelled 10.2 42
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
59c5wcoC_
not modelled 10.2 50
PDB header:viral protein
Chain: C: PDB Molecule:ns2;
PDBTitle: matrix protein (m1) of infectious salmon anaemia virus
60c6d6vE_
not modelled 10.2 33
PDB header:replication
Chain: E: PDB Molecule:telomerase holoenzyme teb2 subunit;
PDBTitle: cryoem structure of tetrahymena telomerase with telomeric dna at 4.82 angstrom resolution
61c1iyjB_
not modelled 10.1 19
PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer susceptibility;
PDBTitle: structure of a brca2-dss1 complex
62c4wkkA_
not modelled 10.0 19
PDB header:signaling protein
Chain: A: PDB Molecule:bacteriophytochrome protein;
PDBTitle: the photosensory module (pas-gaf-phy) of the bacterial phytochrome2 agp1 (atbphp1) in the pr form, chromophore modelled with an exocyclic3 double bond at pyrrole ring a.
63c5i0hA_
not modelled 10.0 17
PDB header:motor protein
Chain: A: PDB Molecule:unconventional myosin-x;
PDBTitle: crystal structure of myosin x motor domain in pre-powerstroke state
64c6ir8A_
not modelled 9.9 22
PDB header:transcription/dna
Chain: A: PDB Molecule:oswrky45;
PDBTitle: rice wrky/dna complex
65d1w96a1
not modelled 9.7 12
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
66c4gkfA_
not modelled 9.7 18
PDB header:unknown function
Chain: A: PDB Molecule:crispr system cmr subunit cmr5;
PDBTitle: crystal structure and characterization of cmr5 protein from pyrococcus2 furiosus
67c4zg4E_
not modelled 9.5 29
PDB header:motor protein
Chain: E: PDB Molecule:myosin-vc;
PDBTitle: myosin vc pre-powerstroke
68c4rfuB_
not modelled 9.5 27
PDB header:viral protein
Chain: B: PDB Molecule:coat protein;
PDBTitle: crystal structure of truncated p-domain from grouper nervous necrosis2 virus capsid protein at 1.2a
69c2biwC_
not modelled 9.5 37
PDB header:oxidoreductase
Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase;
PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme
70d1y0ja1
not modelled 9.4 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
71c2q24A_
not modelled 9.4 19
PDB header:transcription
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor
72c2k58B_
not modelled 9.3 18
PDB header:transport protein
Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: nmr structures of the first transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit
73c2n2aA_
not modelled 9.3 15
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
74c3etoB_
not modelled 9.2 20
PDB header:signaling protein
Chain: B: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: 2 angstrom xray structure of the notch1 negative regulatory region2 (nrr)
75c2i9hA_
not modelled 9.1 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin i;
PDBTitle: nmr solution structure of the reduced form of thioredoxin 12 from yeast (trx1)
76c5dynA_
not modelled 9.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidase;
PDBTitle: b. fragilis cysteine protease
77c2lx0A_
not modelled 9.0 31
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
78c6m9tA_
not modelled 9.0 40
PDB header:membrane protein
Chain: A: PDB Molecule:prostaglandin e2 receptor ep3 subtype, endolysin chimera;
PDBTitle: crystal structure of ep3 receptor bound to misoprostol-fa
79c1ldaA_
not modelled 8.9 17
PDB header:transport protein
Chain: A: PDB Molecule:glycerol uptake facilitator protein;
PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
80d1fx8a_
not modelled 8.9 17
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
81c3npeA_
not modelled 8.9 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen
82c6ojrA_
not modelled 8.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:lignostilbene-alpha,beta-dioxygenase isozyme i;
PDBTitle: crystal structure of sphingomonas paucimobilis tmy1009 apo-lsda
83c3emlA_
not modelled 8.9 20
PDB header:membrane protein, receptor
Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera;
PDBTitle: the 2.6 a crystal structure of a human a2a adenosine receptor bound to2 zm241385.
84c3x27C_
not modelled 8.8 13
PDB header:lyase
Chain: C: PDB Molecule:cucumopine synthase;
PDBTitle: structure of mcbb in complex with tryptophan
85c4ip8B_
not modelled 8.7 47
PDB header:protein binding
Chain: B: PDB Molecule:serum amyloid a-1 protein;
PDBTitle: structure of human serum amyloid a1
86d1oedc_
not modelled 8.7 18
Fold:Neurotransmitter-gated ion-channel transmembrane pore
Superfamily:Neurotransmitter-gated ion-channel transmembrane pore
Family:Neurotransmitter-gated ion-channel transmembrane pore
87c1fgeA_
not modelled 8.7 57
PDB header:blood coagulation inhibitor
Chain: A: PDB Molecule:thrombomodulin;
PDBTitle: epidermal growth factor (egf) subdomain of human2 thrombomodulin (nmr, 14 structures)
88d1p6xa_
not modelled 8.4 45
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
89d2oeba1
not modelled 8.4 17
Fold:ATPD N-terminal domain-like
Superfamily:AF1862-like
Family:Cas Cmr5-like
90c3ctwB_
not modelled 8.4 30
PDB header:protein binding
Chain: B: PDB Molecule:rcda;
PDBTitle: crystal structure of rcda from caulobacter crescentus cb15
91c4xesA_
not modelled 8.3 9
PDB header:signaling protein, hydrolase
Chain: A: PDB Molecule:neurotensin receptor type 1, endolysin chimera;
PDBTitle: structure of active-like neurotensin receptor
92c2mn9A_
not modelled 8.3 35
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: peptoid analogue of maculatin g15 - peptoid trans-nleu at position 13
93c2mn8A_
not modelled 8.3 35
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: nmr structure of a peptoid analogue of maculatin g15 containing cis-2 nleu at position 13
94c2b5fD_
not modelled 8.3 12
PDB header:transport protein,membrane protein
Chain: D: PDB Molecule:aquaporin;
PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution
95c6e59A_
not modelled 8.3 30
PDB header:signaling protein
Chain: A: PDB Molecule:substance-p receptor, glga glycogen synthase, substance-p
PDBTitle: crystal structure of the human nk1 tachykinin receptor
96c6cfwE_
not modelled 8.2 8
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
97c6iiuA_
not modelled 8.2 30
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
98d1gpqa_
not modelled 8.2 11
Fold:Inhibitor of vertebrate lysozyme, Ivy
Superfamily:Inhibitor of vertebrate lysozyme, Ivy
Family:Inhibitor of vertebrate lysozyme, Ivy
99c2kcyA_
not modelled 8.1 25
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below