Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3806c_(-)_4269103_4270011
DateFri Aug 9 18:20:51 BST 2019
Unique Job ID42ec28e3ae5f8532
SequenceMSEDVVTQPP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.249 Y:55.373 Z:63.006
Model (left) based on template c4od5C_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
Confidence and coverage
Confidence:100.0% Coverage: 87%
264 residues ( 87% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4od5C_



100.0 15
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
2c3dh4A_



60.9 12
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
3c2l4fA_



32.8 42
PDB header:protein binding
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: nmr structure of the uba domain of s. cerevisiae dcn1 bound to2 ubiquitin
4c2xq2A_



28.1 12
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
5d1diha2



23.9 28
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
6c5us6L_



20.7 31
PDB header:oxidoreductase
Chain: L: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: structure of dihydrodipicolinate reductase from vibrio vulnificus2 bound to nadh and 2,6 pyridine dicarboxylic acid with intact3 polyhistidine tag
7c4o6mA_



16.9 13
PDB header:transferase
Chain: A: PDB Molecule:af2299, a cdp-alcohol phosphotransferase;
PDBTitle: structure of af2299, a cdp-alcohol phosphotransferase (cmp-bound)
8c3npkB_



16.4 18
PDB header:transferase
Chain: B: PDB Molecule:geranyltranstransferase;
PDBTitle: the crystal structure of geranyltranstransferase from campylobacter2 jejuni
9c4ksnC_



14.3 33
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:sdbc;
PDBTitle: c-terminal domain of sdbc protein from legionella pneumophila.
10c5tenH_



13.2 31
PDB header:oxidoreductase
Chain: H: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: structure of 4-hydroxy-tetrahydrodipicolinate reductase from vibrio2 vulnificus with 2,5 furan dicarboxylic and nadh with intact3 polyhistidine tag
11c2ww9O_



7.5 38
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l39;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
12c3m9uD_



7.4 12
PDB header:transferase
Chain: D: PDB Molecule:farnesyl-diphosphate synthase;
PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 lactobacillus brevis atcc 367
13c5wwoB_



7.3 23
PDB header:rna binding protein
Chain: B: PDB Molecule:essential nuclear protein 1;
PDBTitle: crystal structure of enp1
14c1drwA_



7.2 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: escherichia coli dhpr/nhdh complex
15c6g4ww_



7.0 15
PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s15a;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
16c4heoA_



6.7 31
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
17c2ogdB_



6.6 14
PDB header:transferase
Chain: B: PDB Molecule:farnesyl pyrophosphate synthase;
PDBTitle: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate2 bph-527
18c3ijpA_



6.4 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase from bartonella2 henselae at 2.0a resolution
19d1vm6a2



6.2 26
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
20c2v6qB_



6.2 33
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of a bhrf-1 : bim bh3 complex
21c2wh6B_



not modelled 6.1 33
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of anti-apoptotic bhrf1 in complex with the bim bh32 domain
22c5vwzD_



not modelled 6.0 33
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3pc
23c5vwzB_



not modelled 6.0 33
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3pc
24c4nlbA_



not modelled 5.9 32
PDB header:hydrolase
Chain: A: PDB Molecule:ribosomal rna processing protein 6;
PDBTitle: crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
25c3fdlB_



not modelled 5.9 33
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bim bh3 peptide in complex with bcl-xl
26c4ywjB_



not modelled 5.7 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: crystal structure of 4-hydroxy-tetrahydrodipicolinate reductase (htpa2 reductase) from pseudomonas aeruginosa
27c4a1bB_



not modelled 5.6 38
PDB header:ribosome
Chain: B: PDB Molecule:rpl39;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3.
28c2ndjA_



not modelled 5.5 16
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
29c5k4bA_



not modelled 5.4 25
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit d;
PDBTitle: structure of eukaryotic translation initiation factor 3 subunit d2 (eif3d) cap binding domain from nasonia vitripennis, crystal form 1
30c2mpnB_



not modelled 5.2 12
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
31c2hbkA_



not modelled 5.2 19
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
32c6nplA_



not modelled 5.2 12
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
33c3izso_



not modelled 5.2 38
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein rpl28 (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
34c6g2jY_



not modelled 5.2 7
PDB header:oxidoreductase
Chain: Y: PDB Molecule:mcg5603;
PDBTitle: mouse mitochondrial complex i in the active state
35c3ukwC_



not modelled 5.2 40
PDB header:protein transport/inhibitor
Chain: C: PDB Molecule:bimax1 peptide;
PDBTitle: mouse importin alpha: bimax1 peptide complex
36c2zkr3_



not modelled 5.1 50
PDB header:ribosomal protein/rna
Chain: 3: PDB Molecule:60s ribosomal protein l39e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
37c3qy9C_



not modelled 5.0 32
PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: the crystal structure of dihydrodipicolinate reductase from2 staphylococcus aureus

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Transmembrane helix prediction 

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