Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3811_(-)_4274976_4276595
DateFri Aug 9 18:20:52 BST 2019
Unique Job ID408f05c6235ff838
SequenceMAATVVIVAW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.078 Y:41.779 Z:56.458
Model (left) based on template c4z8iA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan recognition protein 3;
PDBTitle: crystal structure of branchiostoma belcheri tsingtauense peptidoglycan2 recognition protein 3
Confidence and coverage
Confidence:100.0% Coverage: 32%
172 residues ( 32% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4z8iA_



100.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan recognition protein 3;
PDBTitle: crystal structure of branchiostoma belcheri tsingtauense peptidoglycan2 recognition protein 3
2d1sxra_



100.0 31
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
3c1s2jA_



100.0 31
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa;
PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa
4c6ckhA_



100.0 24
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein;
PDBTitle: manduca sexta peptidoglycan recognition protein-1
5c5xz3D_



100.0 25
PDB header:immune system
Chain: D: PDB Molecule:peptidoglycan-recognition protein;
PDBTitle: the x-ray structure of apis mellifera pgrp-sa
6d2cb3a1



100.0 28
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
7c2rkqA_



100.0 28
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein-sd;
PDBTitle: crystal structure of drosophila peptidoglycan recognition2 protein sd (pgrp-sd)
8c3ep1B_



100.0 29
PDB header:immune system
Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein
PDBTitle: structure of the pgrp-hd from alvinella pompejana
9d2f2la1



100.0 26
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
10d1ycka1



100.0 35
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
11d2f2lx1



100.0 28
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
12c2xz4A_



100.0 29
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein lf;
PDBTitle: crystal structure of the lfz ectodomain of the2 peptidoglycan recognition protein lf
13d1ohta_



100.0 24
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
14c1ohtA_



100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:cg14704 protein;
PDBTitle: peptidoglycan recognition protein-lb
15d1sk4a_



100.0 31
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
16c6fhgB_



100.0 22
PDB header:antimicrobial protein
Chain: B: PDB Molecule:lyst endolysin;
PDBTitle: crystal structure of the ts2631 endolysin from thermus scotoductus2 phage with the unique n-terminal moiety responsible for peptidoglycan3 anchoring
17c2xz8A_



100.0 18
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein lf;
PDBTitle: crystal structure of the lfw ectodomain of the2 peptidoglycan recognition protein lf
18d1lbaa_



100.0 28
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
19d2bgxa2



99.9 16
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
20d1yb0a1



99.9 14
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
21c3hmaA_



not modelled 99.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase xlya;
PDBTitle: amidase from bacillus subtilis
22c4bxdB_



not modelled 99.9 26
PDB header:hydrolase/peptide
Chain: B: PDB Molecule:ampdh3;
PDBTitle: crystal structure of ampdh3 from pseudomonas aeruginosa in2 complex with tetrasaccharide pentapeptide
23d1j3ga_



not modelled 99.8 13
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
24c4bolA_



not modelled 99.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:ampdh2;
PDBTitle: crystal structure of ampdh2 from pseudomonas aeruginosa in2 complex with pentapeptide
25c2bh7A_



not modelled 99.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase;
PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms
26c4olsA_



not modelled 99.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:endolysin;
PDBTitle: the amidase-2 domain of lysgh15
27c4ivvA_



not modelled 99.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: catalytic amidase domain of the major autolysin lyta from2 streptococcus pneumaniae
28c3latB_



not modelled 98.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:bifunctional autolysin;
PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie
29c4x36A_



not modelled 97.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: crystal structure of the autolysin lyta from streptococcus pneumoniae2 tigr4
30d3d85d3



not modelled 75.3 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
31c5aj3d_



not modelled 67.1 29
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the small subunit of the mammalian mitoribosome
32c3v6oB_



not modelled 62.3 44
PDB header:immune system
Chain: B: PDB Molecule:leptin receptor;
PDBTitle: leptin receptor-antibody complex
33d1f6fb2



not modelled 62.1 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
34d3d48r2



not modelled 61.5 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
35c1kf9C_



not modelled 59.2 20
PDB header:hormone/growth factor
Chain: C: PDB Molecule:extracellular domain human growth hormone
PDBTitle: phage display derived variant of human growth hormone2 complexed with two copies of the extracellular domain of3 its receptor
36c1f6fB_



not modelled 58.1 31
PDB header:hormone/growth factor/hormone receptor
Chain: B: PDB Molecule:prolactin receptor;
PDBTitle: crystal structure of the ternary complex between ovine2 placental lactogen and the extracellular domain of the rat3 prolactin receptor
37c4nn5C_



not modelled 55.8 20
PDB header:cytokine/cytokine receptor
Chain: C: PDB Molecule:cytokine receptor-like factor 2;
PDBTitle: cytokine receptor complex - crystal form 1a
38d2gysa4



not modelled 55.3 44
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
39d1iarb2



not modelled 53.0 39
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
40c4rs1B_



not modelled 52.7 31
PDB header:cytokine receptor/cytokine
Chain: B: PDB Molecule:granulocyte-macrophage colony-stimulating factor receptor
PDBTitle: crystal structure of receptor-cytokine complex
41c3bpoB_



not modelled 50.6 39
PDB header:cytokine/cytokine receptor
Chain: B: PDB Molecule:interleukin-4 receptor alpha chain;
PDBTitle: crystal structure of the il13-il4r-il13ra ternary complex
42c6cgaC_



not modelled 49.4 21
PDB header:hydrolase
Chain: C: PDB Molecule:ubiquitin carboxyl-terminal hydrolase calypso;
PDBTitle: structure of the pr-dub complex
43d2d9qb2



not modelled 48.6 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
44d1uc6a_



not modelled 48.6 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
45d1cd9b2



not modelled 48.1 38
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
46c3di3B_



not modelled 48.0 31
PDB header:cytokine/cytokine receptor
Chain: B: PDB Molecule:interleukin-7 receptor subunit alpha;
PDBTitle: crystal structure of the complex of human interleukin-7 with2 glycosylated human interleukin-7 receptor alpha ectodomain
47c3cxeC_



not modelled 45.2 28
PDB header:cytokine
Chain: C: PDB Molecule:granulocyte-macrophage colony-stimulating factor receptor
PDBTitle: structure of the gm-csf receptor complex
48c6dg5B_



not modelled 45.1 44
PDB header:biosynthetic protein/protein binding
Chain: B: PDB Molecule:interleukin-2 receptor subunit beta;
PDBTitle: structure of a de novo designed interleukin-2/interleukin-15 mimetic2 complex with il-2rb and il-2rg
49c2yh5A_



not modelled 43.2 6
PDB header:lipid binding protein
Chain: A: PDB Molecule:dapx protein;
PDBTitle: structure of the c-terminal domain of bamc
50c4nn5B_



not modelled 42.5 38
PDB header:cytokine/cytokine receptor
Chain: B: PDB Molecule:interleukin-7 receptor subunit alpha;
PDBTitle: cytokine receptor complex - crystal form 1a
51c3tgxA_



not modelled 40.9 33
PDB header:cytokine/cytokine receptor
Chain: A: PDB Molecule:interleukin-21 receptor;
PDBTitle: il-21:il21r complex
52c4nkqB_



not modelled 40.2 28
PDB header:cytokine/cytokine receptor
Chain: B: PDB Molecule:granulocyte-macrophage colony-stimulating factor receptor
PDBTitle: structure of a cytokine receptor complex
53d1erna2



not modelled 38.9 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
54d1a9xb1



not modelled 37.5 39
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Carbamoyl phosphate synthetase, small subunit N-terminal domain
Family:Carbamoyl phosphate synthetase, small subunit N-terminal domain
55c3hhrC_



not modelled 37.4 33
PDB header:hormone/receptor
Chain: C: PDB Molecule:human growth hormone receptor (hghbp);
PDBTitle: human growth hormone and extracellular domain of its2 receptor: crystal structure of the complex
56c5mzvC_



not modelled 37.4 28
PDB header:cytokine
Chain: C: PDB Molecule:interleukin-23 receptor;
PDBTitle: il-23:il-23r:nb22e11 complex
57d2b5ic1



not modelled 36.5 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
58c1p9mC_



not modelled 35.1 31
PDB header:signaling protein/cytokine
Chain: C: PDB Molecule:interleukin-6 receptor alpha chain;
PDBTitle: crystal structure of the hexameric human il-6/il-6 alpha2 receptor/gp130 complex
59c5j12C_



not modelled 34.9 44
PDB header:signaling protein
Chain: C: PDB Molecule:cytokine receptor-like factor 2;
PDBTitle: structure of human tslp:tslpr in complex with mouse il-7ralpha
60c1pgrD_



not modelled 33.3 38
PDB header:cytokine
Chain: D: PDB Molecule:protein (g-csf receptor);
PDBTitle: 2:2 complex of g-csf with its receptor
61c5d28A_



not modelled 32.1 31
PDB header:viral protein
Chain: A: PDB Molecule:gm-csf/il-2 inhibition factor;
PDBTitle: complex of gm-csf/il-2 inhibition factor with granulocyte-macrophage2 colony-stimulating factor
62c2b5iC_



not modelled 31.7 28
PDB header:cytokine/cytokine receptor
Chain: C: PDB Molecule:cytokine receptor common gamma chain;
PDBTitle: cytokine receptor complex
63d1axib2



not modelled 30.8 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
64d2gysa2



not modelled 29.9 38
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
65c6cl5F_



not modelled 28.9 35
PDB header:viral protein
Chain: F: PDB Molecule:tail fiber protein;
PDBTitle: structure of p. aeruginosa r1 pyocin fiber pales_06171 comprising c-2 terminal residues 323-701
66d1cmxa_



not modelled 28.4 29
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Ubiquitin carboxyl-terminal hydrolase UCH-L
67c2p5qA_



not modelled 27.3 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione peroxidase 5;
PDBTitle: crystal structure of the poplar glutathione peroxidase 5 in the2 reduced form
68c2ywiA_



not modelled 26.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical conserved protein;
PDBTitle: crystal structure of uncharacterized conserved protein from2 geobacillus kaustophilus
69c6cl6E_



not modelled 26.2 29
PDB header:viral protein
Chain: E: PDB Molecule:tail fiber protein;
PDBTitle: structure of p. aeruginosa r2 pyocin fiber pa0620 comprising c-2 terminal residues 323-691
70d1xd3a_



not modelled 25.3 24
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Ubiquitin carboxyl-terminal hydrolase UCH-L
71d1p9ma3



not modelled 25.3 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
72c2e8pA_



not modelled 23.5 12
PDB header:signaling protein
Chain: A: PDB Molecule:elf3 protein;
PDBTitle: solution structure of the n-terminal sam-domain of e74-like2 factor 3
73c5ns5A_



not modelled 23.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase glij;
PDBTitle: cys-gly dipeptidase glij in complex with cu2+ and zn2+
74c2d9qB_



not modelled 23.1 31
PDB header:signaling protein/cytokine
Chain: B: PDB Molecule:granulocyte colony-stimulating factor receptor;
PDBTitle: crystal structure of the human gcsf-receptor signaling complex
75c4jzjD_



not modelled 23.1 22
PDB header:cytokine receptor/immune system
Chain: D: PDB Molecule:interleukin-3 receptor subunit alpha;
PDBTitle: crystal structure of receptor-fab complex
76d1n26a3



not modelled 22.9 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
77c2erjF_



not modelled 22.6 44
PDB header:immune system/cytokine
Chain: F: PDB Molecule:interleukin-2 receptor beta chain;
PDBTitle: crystal structure of the heterotrimeric interleukin-2 receptor in2 complex with interleukin-2
78c1ernA_



not modelled 22.5 39
PDB header:cytokine
Chain: A: PDB Molecule:protein (erythropoietin receptor);
PDBTitle: native structure of the extracellular domain of2 erythropoietin (epo) receptor [ebp]
79c1keeH_



not modelled 22.4 39
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
80d2etla1



not modelled 22.3 16
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Ubiquitin carboxyl-terminal hydrolase UCH-L
81c1u3eM_



not modelled 22.2 41
PDB header:dna binding protein/dna
Chain: M: PDB Molecule:hnh homing endonuclease;
PDBTitle: dna binding and cleavage by the hnh homing endonuclease i-hmui
82c4zkcA_



not modelled 22.1 21
PDB header:viral protein/cytokine
Chain: A: PDB Molecule:chemokine binding protein;
PDBTitle: the chemokine binding protein of orf virus complexed with ccl7
83c3d87D_



not modelled 21.6 28
PDB header:cytokine
Chain: D: PDB Molecule:interleukin-12 subunit p40;
PDBTitle: crystal structure of interleukin-23
84d1zofa1



not modelled 21.1 19
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
85c2lrtA_



not modelled 20.8 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of the uncharacterized thioredoxin-like protein2 bvu_1432 from bacteroides vulgatus
86c5ltvA_



not modelled 20.8 27
PDB header:signaling protein
Chain: A: PDB Molecule:chemotactic transducer pctc;
PDBTitle: ligand binding regions of pseudomonas aeruginosa pao1 amino acid2 chemoreceptors pctc in complex with gaba
87c2erjC_



not modelled 20.4 33
PDB header:immune system/cytokine
Chain: C: PDB Molecule:cytokine receptor common gamma chain;
PDBTitle: crystal structure of the heterotrimeric interleukin-2 receptor in2 complex with interleukin-2
88d1t23a_



not modelled 19.9 19
Fold:Chromosomal protein MC1
Superfamily:Chromosomal protein MC1
Family:Chromosomal protein MC1
89c1n26A_



not modelled 19.8 31
PDB header:cytokine
Chain: A: PDB Molecule:il-6 receptor alpha chain;
PDBTitle: crystal structure of the extra-cellular domains of human interleukin-62 receptor alpha chain
90c5d0qC_



not modelled 18.1 6
PDB header:protein transport
Chain: C: PDB Molecule:outer membrane protein assembly factor bamc;
PDBTitle: bamacde complex, outer membrane beta-barrel assembly machinery (bam)2 complex
91c4ig7A_



not modelled 17.6 9
PDB header:hydrolase/signaling protein
Chain: A: PDB Molecule:ubiquitin c-terminal hydrolase 37;
PDBTitle: crystal structure of trichinella spiralis uch37 bound to ubiquitin2 vinyl methyl ester
92c3wp6A_



not modelled 17.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:cdbfv;
PDBTitle: the complex structure of cdbfv e109a with xylotriose
93d1m4wa_



not modelled 17.4 24
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Xylanase/endoglucanase 11/12
94c1i1rA_



not modelled 17.0 26
PDB header:cytokine
Chain: A: PDB Molecule:interleukin-6 receptor beta chain;
PDBTitle: crystal structure of a cytokine/receptor complex
95c4tr3A_



not modelled 16.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:type iii iodothyronine deiodinase;
PDBTitle: mouse iodothyronine deiodinase 3 catalytic core, semet-labeled active2 site mutant secys->cys
96c3dwvB_



not modelled 16.6 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutathione peroxidase-like protein;
PDBTitle: glutathione peroxidase-type tryparedoxin peroxidase, oxidized form
97d1cmra_



not modelled 16.6 42
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
98d2b5ib2



not modelled 16.1 38
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
99c2ov2O_



not modelled 15.9 24
PDB header:protein binding/transferase
Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4)

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